ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 32 0.73
2UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE) 31 1.6
3OLF9_MOUSE (Q60885) Olfactory receptor 9 (Olfactory receptor 269... 30 4.7
4GP144_HUMAN (Q7Z7M1) Probable G-protein coupled receptor 144 (G-... 29 8.1

>SYG_ARCFU (O29346) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 570

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 323 RRGFIQLRQFVYFTDSFFFHAGSRQYDHFPIY 228
           R+G I+LR+F      FF H G +++ HF +Y
Sbjct: 197 RQGVIRLREFNQAELEFFVHPGEKKHPHFSLY 228



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>UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE)|
          Length = 599

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +3

Query: 267 EEERIREVDKLT*LNESSPSSGLTPAVCSGFQTHSGN*TRGLRSLRDLTQHLTARADDSH 446
           EEE + EVD+ +  NESS S    P V    +T      R   S ++L +  T   DD H
Sbjct: 174 EEEYVEEVDEKSLKNESS-SDEFEPVVPEQLETPISKRRRSRSSAKNLEKESTMNLDD-H 231

Query: 447 AP 452
           AP
Sbjct: 232 AP 233



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>OLF9_MOUSE (Q60885) Olfactory receptor 9 (Olfactory receptor 269-3) (Odorant|
           receptor M25)
          Length = 312

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -1

Query: 235 LYTSTIIAMLVVSVLSLCLAIYHLLCQASLHFHEKPLTPPHPSKPLFGYVTACLALLIAF 56
           LYT+TI+  ++  + S C  I    C   L+F             LFG    CL   +A+
Sbjct: 72  LYTTTIVPRMLADLRSSCPTIPLASCFTQLYFF-----------ALFGIAECCLLTAMAY 120

Query: 55  XSCKCSCXP 29
                 C P
Sbjct: 121 DRYAAICCP 129



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>GP144_HUMAN (Q7Z7M1) Probable G-protein coupled receptor 144 (G-protein coupled|
           receptor PGR24)
          Length = 963

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
 Frame = -1

Query: 145 HFHEKPLTPPHPSKPLFG---YVTACLALLIAFXSCKCSC 35
           H  + PL PPHP  P  G     T C    +   S  C C
Sbjct: 594 HRAQSPLFPPHPPSPYTGGAWATTGCSVAALYLDSTACFC 633


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,947,917
Number of Sequences: 219361
Number of extensions: 1513496
Number of successful extensions: 3552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3550
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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