Clone Information

BLAST Search Result

Clone Name	rbasd2d13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	60	3e-09
2	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	59	5e-09
3	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	59	6e-09
4	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	59	6e-09
5	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	57	2e-08
6	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	50	2e-06
7	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	50	2e-06
8	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	49	6e-06
9	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	48	1e-05
10	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	47	2e-05
11	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	39	0.006
12	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	39	0.006
13	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	38	0.008
14	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	37	0.019
15	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	37	0.019
16	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	37	0.019
17	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	36	0.032
18	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	36	0.042
19	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	36	0.042
20	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	35	0.055
21	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	35	0.055
22	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	35	0.072
23	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	35	0.072
24	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	35	0.094
25	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	35	0.094
26	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	34	0.12
27	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	34	0.12
28	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	34	0.12
29	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	34	0.12
30	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	34	0.12
31	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	34	0.12
32	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	34	0.12
33	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	34	0.16
34	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	34	0.16
35	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	34	0.16
36	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	33	0.21
37	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	33	0.21
38	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	33	0.27
39	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	33	0.36
40	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	33	0.36
41	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	33	0.36
42	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	33	0.36
43	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	33	0.36
44	NOT4_YEAST (P34909) General negative regulator of transcription ...	32	0.61
45	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	32	0.61
46	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	31	1.0
47	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	31	1.0
48	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	31	1.4
49	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	31	1.4
50	NAM8_YEAST (Q00539) Protein NAM8	31	1.4
51	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	31	1.4
52	SXL_MEGSC (O01671) Sex-lethal homolog	31	1.4
53	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	31	1.4
54	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	31	1.4
55	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	31	1.4
56	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	31	1.4
57	SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-...	31	1.4
58	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	31	1.4
59	RSD1_SCHPO (O13845) RNA-binding protein rsd1	30	1.8
60	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	30	1.8
61	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	30	2.3
62	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	30	3.0
63	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	30	3.0
64	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	30	3.0
65	ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1	30	3.0
66	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	29	3.9
67	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	29	3.9
68	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	29	3.9
69	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	29	3.9
70	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	29	5.1
71	Y190_CHLPN (Q9Z8Z4) Hypothetical protein CPn_0190/CP0577/CPj0190...	29	5.1
72	LARK_DROME (Q94901) RNA-binding protein lark	29	5.1
73	SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr...	28	6.7
74	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	28	6.7
75	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	28	6.7
76	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	28	6.7
77	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	28	6.7
78	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	28	6.7
79	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	28	6.7
80	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	28	6.7
81	YG1T_YEAST (P53227) Hypothetical 31.0 kDa protein in BUD9-RME1 i...	28	8.8
82	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	28	8.8
83	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	28	8.8
84	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	28	8.8
85	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	28	8.8
86	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	28	8.8
87	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	28	8.8

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFVTY SA EVN+AI +L+G+DLDGR IRV+ AE +PR Q
Sbjct: 252 GFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQ 291



 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFVT  + +EV  A    +G ++DGR IRV    +  + +
Sbjct: 132 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 171

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFVTY S+ EVN+AI +L+GVDLDGR IRV+ AE +PR Q
Sbjct: 251 GFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQ 290



 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFVT  + +EV  A    +G ++DGR IRV    +  + +
Sbjct: 131 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 170

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVTY SA+EVNNAI +LDGVDL+GR IRV+ AE++P
Sbjct: 232 GFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 268



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  S +EV  A    +G +LDGR +RV      P E+R
Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKR 169

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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVTY SA+EVNNAI +LDGVDL+GR IRV+ AE++P
Sbjct: 238 GFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 274



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  S +EV  A    +G +LDGR +RV      P E+R
Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKR 169

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 26/37 (70%), Positives = 31/37 (83%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVTY S+ EV NAI +LDG DLDGRQIRV+ AE++P
Sbjct: 248 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284



 Score = 36.6 bits (83), Expect = 0.025
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 294
           GFVT  S  EV  A    +G +LDGR +RV      P+ +  F
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177

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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 309
           GFVT  S  EVN+AI+ LDG  LDGR +RV VAE +PR
Sbjct: 193 GFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPR 230



 Score = 36.2 bits (82), Expect = 0.032
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  + +E   A+  L+G D+DGRQ+ V  A  +   +R
Sbjct: 99  GFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVT  S+ EV  AI++L+G DLDGRQIRV+ AE++P
Sbjct: 301 GFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 294
           GFVT  +A EV  A    +G + +GR +RV      P+ +  F
Sbjct: 143 GFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESF 185

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVT    DE+N AIS LDG +L+GR IRV VAE +P
Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324



 Score = 32.3 bits (72), Expect = 0.46
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  S DE   A+   +  DL+GR +  TV ++ PR  R
Sbjct: 194 GFVTMSSVDEAETAVEKFNRYDLNGRLL--TVNKAAPRGSR 232

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 309
           GFVT  S  E++ AI+NLDG  LDGR IRV  AE +PR
Sbjct: 235 GFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPR 272



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  + +E + A+      DL+GR +  TV ++ PR  R
Sbjct: 141 GFVTMSTVEEADKAVELYSQYDLNGRLL--TVNKAAPRGSR 179

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 309
           GFVT  S  E+++AI+NLDG  LDGR IRV VAE + R
Sbjct: 274 GFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSR 311

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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+ S + + +AI N++G +LDGR I V  A+S+
Sbjct: 52  GFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87

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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 15/36 (41%), Positives = 27/36 (75%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GF+T+ SA+ +N+A+  ++ V+L+GR +R+ VA  K
Sbjct: 261 GFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296



 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 321
           FVT GS +E   AI   DG  + GR ++V   E
Sbjct: 159 FVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191

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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+ S   + +AI N++G +LDGR I V  A+S+
Sbjct: 52  GFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87

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>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  ++DE    IS+L   +L GR I V  A+++P E++
Sbjct: 495 GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPSEKK 535

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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 294
           GFV +        AIS +DG +L+GR IRV  A  +P   R +
Sbjct: 79  GFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAY 121

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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A     E+R
Sbjct: 49  GFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERR 89

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>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 36.2 bits (82), Expect = 0.032
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+ + + + +AI  ++G +LDGR I V  A+S+
Sbjct: 31  GFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66

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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G DLDGR I V  A+S+
Sbjct: 52  GFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87

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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G DLDGR I V  A+S+
Sbjct: 52  GFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87

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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFV++ S D+  NA+ ++ G DL+GR +R+  A  +
Sbjct: 205 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 240

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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G DLDGR I V  A+S+
Sbjct: 52  GFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87

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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV YG+ +E   A+S ++G +++GR I V  A+ +   Q
Sbjct: 234 GFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273

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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV YG+ +E   A+S ++G +++GR I V  A+ +   Q
Sbjct: 234 GFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273

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>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFV + S D  N+AIS ++G +L+G  I V VA+  P
Sbjct: 75  GFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111

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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GF+T+ + +  ++A+  ++G  LDGRQIRV  A    R  R
Sbjct: 50  GFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSR 90

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>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFVT  ++DE    IS+L   +L GR I V  A+++P
Sbjct: 451 GFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEP 487

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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A
Sbjct: 50  GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A
Sbjct: 50  GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A
Sbjct: 50  GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A
Sbjct: 50  GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFVT+ + D+  +A+  ++G  +DGRQIRV  A
Sbjct: 50  GFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

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>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G +LDGR I V  A+S+
Sbjct: 50  GFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85

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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G +LDGR I V  A+S+
Sbjct: 50  GFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85

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>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVT  +A+E    I++L   +L G+ I V  A+S+P  +R
Sbjct: 472 GFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKR 512

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 297
           FV +   D+   A   L+G +L G Q+RV +++ +PR+ RR
Sbjct: 47  FVEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQGRR 87

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>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE---SKPREQR 300
           G+V + +AD ++ A++ L G DL GR +R+TVAE   S  RE+R
Sbjct: 136 GYVEFETADTLSAALA-LSGEDLMGRPVRITVAEPRRSFAREER 178

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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV YG+ +E   A++ ++G +++GR + V  A+ +   Q
Sbjct: 234 GFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQ 273

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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFVT+     + +AI  ++G +LDGR I V  A+S+
Sbjct: 50  GFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85

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>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 297
           G + + S  ++  A+  LDG +++GR+IR  + E KP  +RR
Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIR--LVEDKPGSRRR 182

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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 297
           G + + S  ++  A+  LDG +++GR IR  + E KPR   R
Sbjct: 149 GVIEFRSYSDMKRALDKLDGTEINGRNIR--LIEDKPRTSHR 188

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE-SKPREQR 300
           GFV +    +  +A+   DG  +DGR++RVT+A+  +P ++R
Sbjct: 63  GFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDER 104

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>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 297
           G + + S  ++  A+  LDG +++GR+IR  + E KP  +RR
Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIR--LVEDKPGSRRR 182

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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GF+T+ + +  + A+  ++G  LDGRQIRV  A    R  R
Sbjct: 50  GFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGTR 90

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>NOT4_YEAST (P34909) General negative regulator of transcription subunit 4|
          Length = 587

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           ++T+GS D+    I+ +DG  +DGR I+     +K
Sbjct: 199 YITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK 233

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 306
           GFVT  + ++ N  I  L+  ++ GR+I+V + E KP E
Sbjct: 128 GFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITE-KPLE 165



 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFV++ S +EV  AI  L+   L+G++IRV  A
Sbjct: 228 GFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260

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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFV++ +  +  NAI  + G  L GRQIR   A  KP
Sbjct: 150 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186

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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFV++ +  +  NAI  + G  L GRQIR   A  KP
Sbjct: 150 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           GFV + + ++ N AIS LDG  LDG ++++ ++  +
Sbjct: 666 GFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQ 701



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           FV +    E   A+S L+GV L GR++ +  AE  P
Sbjct: 761 FVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796

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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFV++ +  +  NAI ++ G  L GRQIR   A  KP
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177

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>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRV 333
           GFV + ++DE   A+S + GV L+GR I+V
Sbjct: 208 GFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237

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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           GFV++ +  +  NAI ++ G  L GRQIR   A  KP
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194

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>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFV +GS  +   AI+NL+G+ +  ++I+V+ A
Sbjct: 122 GFVDFGSEADALRAINNLNGITVRNKRIKVSFA 154

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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV++   ++   A+  ++G +L+G+QI V  A+ K   Q
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV++   ++   A+  ++G +L+G+QI V  A+ K   Q
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV++   ++   A+  ++G +L+G+QI V  A+ K   Q
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV++   ++   A+  ++G +L+G+QI V  A+ K   Q
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

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>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 297
           G V + S  ++ NAI  L G +++GR+I++     + R + R
Sbjct: 147 GVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRSR 188

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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 303
           GFV++   ++   A+  ++G +L+G+QI V  A+ K   Q
Sbjct: 234 GFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           G++ Y +     NA+  ++G DL GR +RV +   K
Sbjct: 383 GYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418

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>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           GFV Y +A +   AIS L+G+ L  + I+V+ A
Sbjct: 64  GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA 96

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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFVTY SAD V+    N   +D   R+I +  AE +  +Q+
Sbjct: 287 GFVTYDSADAVDRVCQN-KFIDFKDRKIEIKRAEPRHMQQK 326

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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           FV + + D+   A    +G++LDGR+IRV  + +K
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197

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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           FV + + D+   A    +G++LDGR+IRV  + +K
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197

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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           FV + + D+   A    +G++LDGR+IRV  + +K
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197

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>ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1|
          Length = 239

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -1

Query: 413 TYGSADEVNNAISNLDGVDLDGRQIRV 333
           TY S DEV + ++ L  VD+DGR+IRV
Sbjct: 31  TYTSGDEVYSKVTGL--VDIDGRRIRV 55

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 312
           G+V + +      AI  + G ++DGR I   ++ SKP
Sbjct: 212 GYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248

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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           FV +   D+   A+   +G++LDGR+IRV  + +K
Sbjct: 164 FVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 198

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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 315
           FV +   D+   A+   +G++LDGR+IRV  + +K
Sbjct: 162 FVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 196

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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFV   +  E   AI  LDG +  GR ++V   ++KPRE R
Sbjct: 45  GFVELEADAEETAAIEALDGAEWMGRDLKVN--KAKPRENR 83

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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 321
           GFV Y   ++   A+  L G  +DG ++ V ++E
Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 802

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>Y190_CHLPN (Q9Z8Z4) Hypothetical protein CPn_0190/CP0577/CPj0190/CpB0193|
          Length = 452

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 355 LTAGRSGLPWQSRSRGSKGGFKIS*LWLEINHVLRKC*FVVSTTI 221
           LT+G SG  W+S S+ + G F  S L  +       C  + STT+
Sbjct: 284 LTSGISGFTWKSASKSNDGSFPFSALRHKETESDTDCFQITSTTL 328

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 309
           GFV      +V +AI  L+G  +DG+ ++V V+ S+ R
Sbjct: 122 GFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVR 159

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>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           G V + S  ++ NAI  L G +++GR+I++     +    R
Sbjct: 147 GVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSR 187

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>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           FV +    +  +A+  +DG  LDGR++RV +A
Sbjct: 59  FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90

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>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           FV +    +  +A+  +DG  LDGR++RV +A
Sbjct: 58  FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89

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>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           FV +    +  +A+  +DG  LDGR++RV +A
Sbjct: 58  FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89

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>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           FV +    +  +A+  +DG  LDGR++RV +A
Sbjct: 58  FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89

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>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 324
           FV +    +  +A+  +DG  LDGR++RV +A
Sbjct: 58  FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89

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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 300
           GFV + + +    A+  L+G ++DG+ + V  A+    + R
Sbjct: 584 GFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDR 624

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 309
           GFV   S  E + AI NL    L+G  + V +++ KP+
Sbjct: 38  GFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPK 75

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>YG1T_YEAST (P53227) Hypothetical 31.0 kDa protein in BUD9-RME1 intergenic|
           region
          Length = 271

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 325 QSRSRGSKGGFKIS*LWLEINHVLRKC*FVVSTTIFSRLMR 203
           Q+    +KGGF IS L L++N   +K   ++ST + +   R
Sbjct: 146 QTEDNATKGGFNISKLTLKVNKPFKKPKRILSTNVVNESNR 186

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 422 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 321
           GFV Y   ++   A+  L G  +DG ++ V ++E
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE 810

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVT 330
           +V + + DE   A+ ++DG  +DG++I  T
Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEITAT 236

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVT 330
           +V + + DE   A+ ++DG  +DG++I  T
Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEITAT 236

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVT 330
           +V + + DE   A+ ++DG  +DG++I  T
Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEITAT 236

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVT 330
           +V + + DE   A+ ++DG  +DG++I  T
Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEITAT 236

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 419 FVTYGSADEVNNAISNLDGVDLDGRQIRVT 330
           +V + + DE   A+ ++DG  +DG++I  T
Sbjct: 207 YVEFENPDEAEKALKHMDGGQIDGQEITAT 236


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,161,149
Number of Sequences: 219361
Number of extensions: 985574
Number of successful extensions: 2301
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result