Clone Name | rbasd2d11 |
---|---|
Clone Library Name | barley_pub |
>OSR8_ORYSA (Q9LRI7) Hydrophobic protein OSR8| Length = 72 Score = 120 bits (301), Expect = 2e-27 Identities = 57/70 (81%), Positives = 61/70 (87%) Frame = -3 Query: 389 ASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGSE 210 + R CTFLEIL AIILPPLGVFLRFGCCSMEFCIC LLTILGY+PGIIYAVYVLVAL S+ Sbjct: 3 SGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSD 62 Query: 209 DRDRDYDTLA 180 R+Y TLA Sbjct: 63 QYQREYHTLA 72
>RC23_ARATH (Q9M095) Hypothetical UPF0057 protein At4g30650| Length = 73 Score = 82.4 bits (202), Expect = 5e-16 Identities = 39/56 (69%), Positives = 46/56 (82%) Frame = -3 Query: 392 MASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 MAS F EIL AI+LPPLGV L+ GCC++EF IC +LTILGYIPGIIYA+YV+V Sbjct: 1 MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56
>LT02_HORVU (Q9ARD5) Low temperature-induced protein lt101.2| Length = 54 Score = 80.5 bits (197), Expect = 2e-15 Identities = 39/53 (73%), Positives = 47/53 (88%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVA 222 S TF+E++ AIILPP+GVFLR+G ++EF IC LLT+LGYIPGIIYAVYVLVA Sbjct: 3 SATFIEVILAIILPPVGVFLRYGL-AVEFWICLLLTLLGYIPGIIYAVYVLVA 54
>RCI2A_ARATH (Q9ZNQ7) Hydrophobic protein RCI2A (Low temperature and| salt-responsive protein LTI6A) Length = 54 Score = 78.6 bits (192), Expect = 8e-15 Identities = 36/51 (70%), Positives = 45/51 (88%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 + TF++I+ AI+LPPLGVFLRFGC +EF IC +LT+LGYIPGIIYA+YVL Sbjct: 3 TATFVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52
>RC24_ARATH (Q9SUI0) Hypothetical UPF0057 protein At4g30660| Length = 74 Score = 77.8 bits (190), Expect = 1e-14 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%) Frame = -3 Query: 380 SCTFL-EILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGSEDR 204 +C L EI+ AI+LPPLGV R GCC++EF IC +LTILGY+PGIIYA+YV+V E+ Sbjct: 4 NCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEY 63 Query: 203 DRDY 192 +Y Sbjct: 64 FDEY 67
>RCI2B_ARATH (Q9ZNS6) Hydrophobic protein RCI2B (Low temperature and| salt-responsive protein LTI6B) Length = 54 Score = 74.7 bits (182), Expect = 1e-13 Identities = 32/51 (62%), Positives = 44/51 (86%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 + TF+EI+ AIILPPLGVFL+FGC +EF IC +LT+ GY+PGI+YA+Y++ Sbjct: 3 TATFVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52
>RC22_ARATH (O82232) Hypothetical UPF0057 protein At2g24040| Length = 75 Score = 74.3 bits (181), Expect = 1e-13 Identities = 35/67 (52%), Positives = 46/67 (68%) Frame = -3 Query: 392 MASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGS 213 MAS EI AI+LPP+GV LR GCC++EF IC +LT LGY+PGIIYA+Y + L Sbjct: 1 MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60 Query: 212 EDRDRDY 192 ++ +Y Sbjct: 61 DEYFDEY 67
>LT01_HORVU (P68179) Low temperature-induced protein lt101.1 (Blt101)| (Blt101.1) Length = 54 Score = 74.3 bits (181), Expect = 1e-13 Identities = 38/52 (73%), Positives = 43/52 (82%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 S T LE++ AIILPP+GVFLR+ +EF IC LLTILGYIPGIIYAVYVLV Sbjct: 3 SATVLEVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53
>ESI3_LOPEL (P68178) Salt stress-induced hydrophobic peptide ESI3| Length = 54 Score = 74.3 bits (181), Expect = 1e-13 Identities = 38/52 (73%), Positives = 43/52 (82%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 S T LE++ AIILPP+GVFLR+ +EF IC LLTILGYIPGIIYAVYVLV Sbjct: 3 SATVLEVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53
>LTI6A_ORYSA (Q8H5T6) Hydrophobic protein LTI6A (Low temperature-induced protein| 6A) Length = 56 Score = 72.8 bits (177), Expect = 4e-13 Identities = 34/55 (61%), Positives = 43/55 (78%) Frame = -3 Query: 392 MASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 MA + T ++I+ AIILPPLGVF +FGC +EF IC LLT GY+PGIIYAV+V+ Sbjct: 1 MADSTATCIDIILAIILPPLGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54
>LTI6B_ORYSA (Q6AT93) Hydrophobic protein LTI6B (Low temperature-induced protein| 6B) Length = 55 Score = 71.6 bits (174), Expect = 1e-12 Identities = 34/47 (72%), Positives = 39/47 (82%) Frame = -3 Query: 368 LEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 ++IL AIILPPLGVFL+FGC EF IC LLT LGYIPGIIYA+Y + Sbjct: 8 IDILIAIILPPLGVFLKFGC-GHEFWICLLLTFLGYIPGIIYAIYAI 53
>RC21_ARATH (Q9FE70) Hypothetical UPF0057 protein At1g57550| Length = 52 Score = 65.9 bits (159), Expect = 5e-11 Identities = 29/49 (59%), Positives = 40/49 (81%) Frame = -3 Query: 374 TFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 +FLE+L AI +PP+GVFLR+G +EF +C LLT+ +IPG+IYA+YVL Sbjct: 3 SFLEVLCAIFIPPVGVFLRYGL-GLEFWVCLLLTLFAFIPGLIYAIYVL 50
>YCU4_CAEEL (Q22701) Hypothetical UPF0057 protein T23F2.4 in chromosome X| Length = 57 Score = 64.3 bits (155), Expect = 2e-10 Identities = 30/48 (62%), Positives = 38/48 (79%) Frame = -3 Query: 365 EILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVA 222 + LFA++LPP+GVFL GC + IC LLTILGYIPGIIYA Y+++A Sbjct: 10 KFLFALLLPPVGVFLEKGC-THHLAICILLTILGYIPGIIYACYIILA 56
>YCU3_CAEEL (Q22700) Hypothetical UPF0057 protein T23F2.3 in chromosome X| Length = 57 Score = 62.4 bits (150), Expect = 6e-10 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Frame = -3 Query: 380 SCTFL-EILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVA 222 +CT + + + A++LPP+GVFL GC IC LLTILGYIPGIIYA YV++A Sbjct: 4 TCTDIPKFICAVLLPPIGVFLEKGC-DYHLAICILLTILGYIPGIIYACYVILA 56
>RIC1_PHYIN (Q9Y068) Protein Ric1| Length = 57 Score = 55.1 bits (131), Expect = 9e-08 Identities = 23/46 (50%), Positives = 37/46 (80%) Frame = -3 Query: 362 ILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 ++ ++I+PP+GVF + GC + + I LLT+LGYIPG+I+AVY+L+ Sbjct: 11 LICSVIIPPVGVFFQVGC-TKDLAINCLLTVLGYIPGVIHAVYILI 55
>YCU5_CAEEL (Q22702) Hypothetical UPF0057 protein T23F2.5 in chromosome X| Length = 57 Score = 54.7 bits (130), Expect = 1e-07 Identities = 29/54 (53%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Frame = -3 Query: 380 SCTFL-EILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVA 222 +CT + + L A++LPP+GV+L GC + I LLTILGYIPGII+A YV++A Sbjct: 4 TCTDIPKFLCALLLPPIGVWLEKGC-TYHLAINILLTILGYIPGIIHACYVILA 56
>Y567_PSEAE (Q9I5W9) Hypothetical UPF0057 protein PA0567| Length = 52 Score = 54.7 bits (130), Expect = 1e-07 Identities = 27/47 (57%), Positives = 36/47 (76%) Frame = -3 Query: 368 LEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVL 228 + IL AI+LPPLGVFL+ G F + LLT+LGYIPGI++AVY++ Sbjct: 4 IRILIAILLPPLGVFLQVGFGGA-FWLNILLTLLGYIPGIVHAVYII 49
>SNA4_YEAST (Q07549) Protein SNA4| Length = 140 Score = 48.5 bits (114), Expect = 9e-06 Identities = 23/60 (38%), Positives = 37/60 (61%) Frame = -3 Query: 371 FLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGSEDRDRDY 192 F+ + A PP V LR G CS +F + LLT+LG++PG+++A Y + + S R+ +Y Sbjct: 13 FILYIVAFFFPPAAVLLRSGPCSSDFLLNVLLTLLGFLPGMLHAFY-YITITSPLRNAEY 71
>YQAE_ECOLI (P0AE42) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/47 (55%), Positives = 31/47 (65%) Frame = -3 Query: 371 FLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYV 231 F I+ IILPPLGV L G F I LLT+LGYIPG+I+A +V Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFWV 48
>YQAE_ECOL6 (P0AE43) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/47 (55%), Positives = 31/47 (65%) Frame = -3 Query: 371 FLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYV 231 F I+ IILPPLGV L G F I LLT+LGYIPG+I+A +V Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFWV 48
>YQAE_ECO57 (P0AE44) Hypothetical UPF0057 protein yqaE| Length = 52 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/47 (55%), Positives = 31/47 (65%) Frame = -3 Query: 371 FLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYV 231 F I+ IILPPLGV L G F I LLT+LGYIPG+I+A +V Sbjct: 3 FWRIVITIILPPLGVLLGKGF-GWAFIINILLTLLGYIPGLIHAFWV 48
>YOT0_CAEEL (P34655) Hypothetical UPF0057 protein ZK632.10 in chromosome III| Length = 80 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = -3 Query: 377 CTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 C L + AI LPP+ V L GC + + I LLT LG IPGII+A Y+++ Sbjct: 2 CQILLAILAIFLPPIAVLLDVGC-NCDLLINILLTCLGIIPGIIHAWYIIL 51
>SNA2_YEAST (P56508) Protein SNA2| Length = 79 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/61 (36%), Positives = 37/61 (60%) Frame = -3 Query: 362 ILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGSEDRDRDYDTL 183 + AI +PPL V+L+ G + + I LL +LG+ PG+I+A+YV+ E+ + Y L Sbjct: 9 VFIAIFIPPLAVWLKRGFFTKDLLINFLLFLLGFFPGLIHALYVISCHPYEENEARYSHL 68 Query: 182 A 180 + Sbjct: 69 S 69
>Y1169_SYNY3 (P74805) Hypothetical UPF0057 protein ssr1169| Length = 54 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/48 (50%), Positives = 36/48 (75%), Gaps = 1/48 (2%) Frame = -3 Query: 368 LEILFAIILPPLGVFLRFGCCSMEFCICXLLTILG-YIPGIIYAVYVL 228 ++I+ AI+LPPLGVFL+ G +F I LLTI G YI G+++A++V+ Sbjct: 4 VKIICAILLPPLGVFLQVG-IGKDFWINLLLTIFGLYILGLVHAIWVI 50
>YAM5_CAEEL (Q17638) Hypothetical UPF0057 protein C04G6.5 in chromosome II| Length = 59 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = -3 Query: 392 MASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYV 231 MA+ + +E++ I LPPL ++ C + I + +L ++PGI+YAVY+ Sbjct: 1 MATDADVIIEVILCIFLPPLAIWWHTKECDINVLIDIIFCLLFWLPGILYAVYI 54
>PMP3_YEAST (P87284) Plasma membrane proteolipid 3| Length = 55 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/52 (34%), Positives = 33/52 (63%) Frame = -3 Query: 380 SCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 S + I+ ++ LPP+ VFL G + + +LTIL + PG++YA+Y+++ Sbjct: 3 SAKIINIILSLFLPPVAVFLARGW-GTDCIVDIILTILAWFPGMLYALYIVL 53
>YV31_CAEEL (Q20516) Hypothetical UPF0057 protein F47B7.1 in chromosome X| Length = 59 Score = 40.0 bits (92), Expect = 0.003 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = -3 Query: 392 MASRSCTFLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVY 234 MA +E++ AI LPPL +F+ C+M + +L ++P +I+A++ Sbjct: 1 MAIEMQQIIELILAIFLPPLAIFIHGNDCNMHVAVNIILCFFFFVPAVIHALW 53
>YC19_SCHPO (O74837) Hypothetical UPF0057 protein C1183.09c in chromosome III| Length = 105 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = -3 Query: 371 FLEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 FL I+ + +P + V +R G C+ +F I L LG IPGII+A+Y+++ Sbjct: 9 FLLIVLSFFVPFIVVGIRRGFCTADFLINICLCALG-IPGIIHAIYIVI 56
>SNA3_YEAST (P14359) Protein SNA3| Length = 133 Score = 37.4 bits (85), Expect = 0.020 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -3 Query: 368 LEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLVALGSEDRDRDYD 189 L ++ A+ +PP+ V+ R G + + + LL +L + P II+A YV+ SE R YD Sbjct: 23 LLMVLAVFIPPVAVWKRKGMFNRDTLLNLLLFLLLFFPAIIHACYVVYETSSE---RSYD 79
>PMP3_CANAL (Q9P824) Plasma membrane proteolipid 3 homolog| Length = 55 Score = 35.8 bits (81), Expect = 0.058 Identities = 17/48 (35%), Positives = 31/48 (64%) Frame = -3 Query: 368 LEILFAIILPPLGVFLRFGCCSMEFCICXLLTILGYIPGIIYAVYVLV 225 +E++ AI LPP+ VF++ G + I +L I + P I++A+YV++ Sbjct: 7 IEVIIAIFLPPVAVFMKCG-ATTPLWINLVLCIFIWFPAILHALYVVL 53
>SYA_METAC (Q8TU79) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 925 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +3 Query: 174 CLSKGVVVPIAVLRAER-DEHVDRVDDAGDVA 266 CLS GV+ PI +L+ ER + V+RV+ A +A Sbjct: 719 CLSTGVIGPIKILKTERIQDGVERVEFAAGIA 750
>NCLN_BRARE (Q6NZ07) Nicalin-1 precursor (Nicastrin-like protein 1)| Length = 572 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +3 Query: 57 HLQTHRKKARHRVHMETHSVDSQLPGEGLITHRIRAVAGCLSKGVVV 197 HL++HR ARH + M+ SV L G G T G LS+ V Sbjct: 380 HLESHRSPARHSI-MDMRSVSPSLEGAGEATTGPHVDLGKLSRNTKV 425
>RS8E_METTH (O26309) 30S ribosomal protein S8e| Length = 127 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 316 KRRKTPSGGRMMANRISRKVQLRDAIGRSRIGSGEISPLLWSGG 447 K K PSGGR NR RK +L ++IG + + GG Sbjct: 7 KSMKKPSGGRAKMNRGKRKYELGREPAETKIGDRRVRLIRTRGG 50
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -1 Query: 469 SFPDPRPNPRTRARERSP 416 SFPD RP P R+R RSP Sbjct: 48 SFPDRRPPPTPRSRSRSP 65
>HSF4_MOUSE (Q9R0L1) Heat shock factor protein 4 (HSF 4) (Heat shock| transcription factor 4) (HSTF 4) (mHSF4) Length = 492 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 472 PSFPDPRPNPRTRARERSPPIRSEISRWRP 383 PSF R R R + P +R + SRWRP Sbjct: 104 PSFVRGREQLLERVRRKVPALRGDDSRWRP 133
>DPP6_MOUSE (Q9Z218) Dipeptidyl aminopeptidase-like protein 6| (Dipeptidylpeptidase VI) (Dipeptidylpeptidase 6) (Dipeptidyl peptidase IV-like protein) (Dipeptidyl aminopeptidase-related protein) (DPPX) Length = 804 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +1 Query: 37 GKPDGLSIYRLTERRHATESIWKHTASIRNCQARGSSRTGYELLQDV*ARV 189 G P S+ E T + H A + C RGS G +LLQ+V R+ Sbjct: 569 GTPGSQSVTERFEVTWETVLVSSHGAVVVKCDGRGSGFQGTKLLQEVRRRL 619 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,237,263 Number of Sequences: 219361 Number of extensions: 1183604 Number of successful extensions: 4337 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4298 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)