Clone Name | rbasd2d11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK062410.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E12, full insert sequence Length = 620 Score = 200 bits (101), Expect = 3e-48 Identities = 142/156 (91%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 ||||| ||||| |||||||||||||| |||| ||||| ||||||||||| |||| |||| Sbjct: 218 agcacatagactgcgtagatgatgccagggacatagccaaggatggtgagaagcaagcag 159 Query: 289 atgcagaactccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatg 348 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 158 atgcagaactccatgctgcagcatccgaagcggaggaagacgccgaggggcgggaggatg 99 Query: 349 atggcgaacaggatctcgaggaaggtgcagctccgg 384 ||||||| ||||||||||||||| ||||||| |||| Sbjct: 98 atggcgagcaggatctcgaggaacgtgcagcaccgg 63
>dbj|AB030211.1| Oryza sativa osr8 mRNA for hydrophobic polypeptide, complete cds Length = 740 Score = 200 bits (101), Expect = 3e-48 Identities = 142/156 (91%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 ||||| ||||| |||||||||||||| |||| ||||| ||||||||||| |||| |||| Sbjct: 344 agcacatagactgcgtagatgatgccagggacatagccaaggatggtgagaagcaagcag 285 Query: 289 atgcagaactccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatg 348 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 284 atgcagaactccatgctgcagcatccgaagcggaggaagacgccgaggggcgggaggatg 225 Query: 349 atggcgaacaggatctcgaggaaggtgcagctccgg 384 ||||||| ||||||||||||||| ||||||| |||| Sbjct: 224 atggcgagcaggatctcgaggaacgtgcagcaccgg 189
>gb|BT019258.1| Zea mays clone Contig931.F mRNA sequence Length = 610 Score = 188 bits (95), Expect = 1e-44 Identities = 175/202 (86%) Strand = Plus / Plus Query: 178 taagcaagggtgtcgtagtccctatcgcggtcctccgagccgagcgcgacgagcacgtag 237 ||||||||||||| ||| ||||| ||| | | || ||| |||| || || || || ||| Sbjct: 225 taagcaagggtgtagtattccctctcgtgctggtcagagtcgagagcaacaaggacatag 284 Query: 238 accgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaac 297 | |||||||||||| ||||||| |||||| ||||| |||||||||| ||||||||||||| Sbjct: 285 atcgcgtagatgattccggggacgtagccaaggattgtgagcagcaggcagatgcagaac 344 Query: 298 tccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaac 357 || || |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct: 345 tctattctgcagcagccgaatcggaggaagacgccgaggggcgggaggatgatggcgaag 404 Query: 358 aggatctcgaggaaggtgcagc 379 |||||||| ||||||||||||| Sbjct: 405 aggatctccaggaaggtgcagc 426
>gb|AY108684.1| Zea mays PCO116945 mRNA sequence Length = 626 Score = 188 bits (95), Expect = 1e-44 Identities = 175/202 (86%) Strand = Plus / Minus Query: 178 taagcaagggtgtcgtagtccctatcgcggtcctccgagccgagcgcgacgagcacgtag 237 ||||||||||||| ||| ||||| ||| | | || ||| |||| || || || || ||| Sbjct: 345 taagcaagggtgtagtattccctctcgtgctggtcagagtcgagagcaacaaggacatag 286 Query: 238 accgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaac 297 | |||||||||||| ||||||| |||||| ||||| |||||||||| ||||||||||||| Sbjct: 285 atcgcgtagatgattccggggacgtagccaaggattgtgagcagcaggcagatgcagaac 226 Query: 298 tccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaac 357 || || |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct: 225 tctattctgcagcagccgaatcggaggaagacgccgaggggcgggaggatgatggcgaag 166 Query: 358 aggatctcgaggaaggtgcagc 379 |||||||| ||||||||||||| Sbjct: 165 aggatctccaggaaggtgcagc 144
>gb|AY823550.1| Pennisetum glaucum low temperature and salt responsive protein mRNA, complete cds Length = 520 Score = 180 bits (91), Expect = 3e-42 Identities = 138/154 (89%) Strand = Plus / Minus Query: 218 cgagcgcgacgagcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtga 277 |||| ||||| || ||||||| ||||||||| || || ||||| ||||||||||| |||| Sbjct: 225 cgagagcgacaaggacgtagatcgcgtagatcattccagggatatagccgaggattgtga 166 Query: 278 gcagcangcagatgcagaactccatgctgcagcagccgaagcggaggaagacgccgagcg 337 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 165 gcagcaagcagatgcagaactccatgctgcagcagccgaatcggaggaagacgccgagcg 106 Query: 338 gcggcaggatgatggcgaacaggatctcgaggaa 371 |||| |||| |||||||| |||||||| ||||| Sbjct: 105 gcgggaggacgatggcgaggaggatctccaggaa 72
>gb|AY131234.1| Triticum aestivum putative low temperature and salt responsive protein mRNA, partial cds Length = 207 Score = 133 bits (67), Expect = 6e-28 Identities = 117/134 (87%) Strand = Plus / Minus Query: 232 acgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||| | ||||||| || |||||||| ||||||||||||||||||||||| || ||| Sbjct: 146 acgtaggcggcgtagaggacgccggggaggtagccgaggatggtgagcagcacgctgatc 87 Query: 292 cagaactccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatg 351 |||||||||||| |||||||||| ||||||| |||||||||| ||||| |||| |||| Sbjct: 86 cagaactccatggagcagcagccgtggcggaggcagacgccgaggggcgggaggaggatg 27 Query: 352 gcgaacaggatctc 365 ||| |||||||||| Sbjct: 26 gcgcacaggatctc 13
>dbj|AK121018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049B21, full insert sequence Length = 577 Score = 117 bits (59), Expect = 3e-23 Identities = 115/134 (85%) Strand = Plus / Minus Query: 232 acgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||||| ||||||| || |||||||| ||| ||||||||||||||||||| || || Sbjct: 218 acgtagacggcgtagaggacgccggggaggtacccgaggatggtgagcagcacgctaatc 159 Query: 292 cagaactccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatg 351 |||||||||||| |||||||||| ||||||| ||||||||||||| || |||| |||| Sbjct: 158 cagaactccatggtgcagcagccatggcggaggcagacgccgagcggtgggaggaggatg 99 Query: 352 gcgaacaggatctc 365 ||| | |||||||| Sbjct: 98 gcgcagaggatctc 85
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 303 gctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaacaggat 362 ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct: 85897 gctgcagcatccgaagcggaggaagacgccgaggggcgggaggatgatggcgagcaggat 85838 Query: 363 ctcgaggaaggtgcagctccgg 384 ||||||||| ||||||| |||| Sbjct: 85837 ctcgaggaacgtgcagcaccgg 85816 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 ||||| ||||| |||||||||||||| |||| ||||| ||||||||||| |||| |||| Sbjct: 86847 agcacatagactgcgtagatgatgccagggacatagccaaggatggtgagaagcaagcag 86788 Query: 289 atgcagaactccat 302 |||||||||||||| Sbjct: 86787 atgcagaactccat 86774
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 303 gctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaacaggat 362 ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct: 21880463 gctgcagcatccgaagcggaggaagacgccgaggggcgggaggatgatggcgagcaggat 21880404 Query: 363 ctcgaggaaggtgcagctccgg 384 ||||||||| ||||||| |||| Sbjct: 21880403 ctcgaggaacgtgcagcaccgg 21880382 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 ||||| ||||| |||||||||||||| |||| ||||| ||||||||||| |||| |||| Sbjct: 21881413 agcacatagactgcgtagatgatgccagggacatagccaaggatggtgagaagcaagcag 21881354 Query: 289 atgcagaactccat 302 |||||||||||||| Sbjct: 21881353 atgcagaactccat 21881340
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 303 gctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaacaggat 362 ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| Sbjct: 11180 gctgcagcatccgaagcggaggaagacgccgaggggcgggaggatgatggcgagcaggat 11121 Query: 363 ctcgaggaaggtgcagctccgg 384 ||||||||| ||||||| |||| Sbjct: 11120 ctcgaggaacgtgcagcaccgg 11099 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 ||||| ||||| |||||||||||||| |||| ||||| ||||||||||| |||| |||| Sbjct: 12130 agcacatagactgcgtagatgatgccagggacatagccaaggatggtgagaagcaagcag 12071 Query: 289 atgcagaactccat 302 |||||||||||||| Sbjct: 12070 atgcagaactccat 12057
>ref|XM_479247.1| Oryza sativa (japonica cultivar-group), mRNA Length = 171 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 154 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 95 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | | ||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 94 actcaa---tcccgcagccgaacttgaagaagacgccgagcggcggcaggatgatggcga 38
>gb|AY554050.1| Oryza sativa (japonica cultivar-group) drought-induced hydrophobic protein (DRR1) mRNA, complete cds Length = 571 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 256 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 197 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | | ||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 196 actcaa---tcccgcagccgaacttgaagaagacgccgagcggcggcaggatgatggcga 140
>dbj|AK121089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065L15, full insert sequence Length = 636 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 281 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 222 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | | ||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 221 actcaa---tcccgcagccgaacttgaagaagacgccgagcggcggcaggatgatggcga 165
>gb|AY107179.1| Zea mays PCO146860 mRNA sequence Length = 698 Score = 109 bits (55), Expect = 8e-21 Identities = 122/144 (84%), Gaps = 3/144 (2%) Strand = Plus / Minus Query: 222 cgcgacgagcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcag 281 ||||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct: 316 cgcgacgaggacgtagacggcgtagatgatgcccgggatgtatcccaggatggtgagcag 257 Query: 282 cangcagatgcagaactccatgctgcagcagccgaagcggaggaagacgccgagcggcgg 341 || |||||| |||||||| | | | | ||| |||||||||||||||||| |||||| Sbjct: 256 caggcagatccagaactcaaccccgatg---ccgtagcggaggaagacgccgaccggcgg 200 Query: 342 caggatgatggcgaacaggatctc 365 ||| | |||||| | ||||||||| Sbjct: 199 cagcaggatggccagcaggatctc 176
>gb|AY607689.1| Oryza sativa (japonica cultivar-group) low temperature-induced low molecular weight integral membrane protein LTI6a mRNA, complete cds Length = 616 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 266 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 207 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | | ||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 206 actcaa---tcccgcagccgaacttgaagaagacgccgagcggcggcaggatgatggcga 150
>gb|AY554051.1| Oryza sativa (japonica cultivar-group) drought-induced hydrophobic protein (DRR2) mRNA, complete cds Length = 547 Score = 105 bits (53), Expect = 1e-19 Identities = 101/115 (87%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 266 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 208 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 207 atgc--ccgcatccgaacttgaggaagacgccgaggggcgggaggatgatggcga 155
>gb|AF503583.2| Oryza sativa (indica cultivar-group) early drought induced protein (R1G1B) mRNA, complete cds Length = 649 Score = 105 bits (53), Expect = 1e-19 Identities = 101/115 (87%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 291 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 233 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 232 atgc--ccgcatccgaacttgaggaagacgccgaggggcgggaggatgatggcga 180
>dbj|AK119249.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G07, full insert sequence Length = 622 Score = 105 bits (53), Expect = 1e-19 Identities = 101/115 (87%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 294 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 236 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 235 atgc--ccgcatccgaacttgaggaagacgccgaggggcgggaggatgatggcga 183
>gb|AY607690.1| Oryza sativa (japonica cultivar-group) low temperature-induced low molecular weight integral membrane protein LTI6b mRNA, complete cds Length = 630 Score = 105 bits (53), Expect = 1e-19 Identities = 101/115 (87%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 273 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 215 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 214 atgc--ccgcatccgaacttgaggaagacgccgaggggcgggaggatgatggcga 162
>gb|AY177890.1| Zea mays clone BAC ZMBBb_95H21 ABA-induced gene, partial sequence Length = 2248 Score = 101 bits (51), Expect = 2e-18 Identities = 71/78 (91%) Strand = Plus / Minus Query: 222 cgcgacgagcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcag 281 ||||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct: 1249 cgcgacgaggacgtagacggcgtagatgatgcccgggatgtatcccaggatggtgagcag 1190 Query: 282 cangcagatgcagaactc 299 || |||||| |||||||| Sbjct: 1189 caggcagatccagaactc 1172 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 319 cggaggaagacgccgagcggcggcaggatgatggcgaacaggatctc 365 |||||||||||||||| ||||||||| | |||||| | ||||||||| Sbjct: 1155 cggaggaagacgccgaccggcggcagcaggatggccagcaggatctc 1109
>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0069I13, complete sequence Length = 94252 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 29032 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 29090 Query: 301 atgctgca 308 |||||||| Sbjct: 29091 atgctgca 29098 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| ||||| ||||||||||||| Sbjct: 29225 gaggaagacgccgaggggcgggaggatgatggcga 29259
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 2159803 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 2159861 Query: 301 atgctgca 308 |||||||| Sbjct: 2159862 atgctgca 2159869 Score = 61.9 bits (31), Expect = 2e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||| | ||| || |||||||||||||||| | ||| ||||||||| Sbjct: 1186261 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagggcgatccagaactcc 1186320 Query: 301 at 302 || Sbjct: 1186321 at 1186322 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 312 gccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 |||| |||||||||||||||||||||||||||| | |||||| Sbjct: 1186401 gccgtagcggaggaagacgccgagcggcggcagcaggatggc 1186442 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| ||||| ||||||||||||| Sbjct: 2159996 gaggaagacgccgaggggcgggaggatgatggcga 2160030
>dbj|AK099873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G21, full insert sequence Length = 1039 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 419 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaagcagatccagaact-c 361 Query: 301 atgctgca 308 |||||||| Sbjct: 360 atgctgca 353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| ||||| ||||||||||||| Sbjct: 226 gaggaagacgccgaggggcgggaggatgatggcga 192
>dbj|AK070577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057O07, full insert sequence Length = 1507 Score = 89.7 bits (45), Expect = 8e-15 Identities = 63/68 (92%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| | Sbjct: 416 gcgtagatgatgccggggatgtagccgaggaaggtgagcaacaggcagatccagaact-c 358 Query: 301 atgctgca 308 |||||||| Sbjct: 357 atgctgca 350 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| ||||| ||||||||||||| Sbjct: 223 gaggaagacgccgaggggcgggaggatgatggcga 189
>ref|XM_475521.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 165 Score = 87.7 bits (44), Expect = 3e-14 Identities = 96/113 (84%), Gaps = 3/113 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||| | ||| || |||||||||||||||| | ||| ||||||||| Sbjct: 143 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagggcgatccagaactcc 84 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 | ||| | |||| |||||||||||||||||||||||||||| | |||||| Sbjct: 83 a---tgccgatgccgtagcggaggaagacgccgagcggcggcagcaggatggc 34
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 26350488 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 26350429 Query: 296 actc 299 |||| Sbjct: 26350428 actc 26350425 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 324 gaagacgccgagcggcggcaggatgatggcga 355 |||||||||||||||||||||||||||||||| Sbjct: 26350288 gaagacgccgagcggcggcaggatgatggcga 26350257
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_D11 Length = 109399 Score = 81.8 bits (41), Expect = 2e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| Sbjct: 4728 agacagcgtagatgatgccggggaggtagccgaagaaggtgagcagcaagcagatccaga 4669 Query: 296 actc 299 |||| Sbjct: 4668 actc 4665 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 324 gaagacgccgagcggcggcaggatgatggcga 355 |||||||||||||||||||||||||||||||| Sbjct: 4528 gaagacgccgagcggcggcaggatgatggcga 4497
>dbj|AB161676.1| Leymus chinensis AcPMP3-1 mRNA for plasma membrane protein 3, complete cds Length = 579 Score = 81.8 bits (41), Expect = 2e-12 Identities = 98/115 (85%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||| || |||||||| ||||||| |||||||| | |||||| ||||||| | Sbjct: 221 gcgtagatgatacccgggatgtacccgaggaaggtgagcaagaggcagatccagaact-c 163 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||||||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 162 atgc--ccgcagccgaacttgaggaagacgccgaggggcgggaggatgatggcga 110
>gb|DQ078765.1| Zea mays clone Zmcoi6.8 cold-inducible unknown mRNA Length = 220 Score = 79.8 bits (40), Expect = 7e-12 Identities = 54/59 (91%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactc 299 ||||||||||||||||||||||||||||||| |||||| || | |||||| |||||||| Sbjct: 73 gcgtagatgatgccggggatgtagccgaggaaggtgaggaggaggcagatccagaactc 15
>gb|AY111401.1| Zea mays CL37957_1 mRNA sequence Length = 478 Score = 79.8 bits (40), Expect = 7e-12 Identities = 54/59 (91%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactc 299 ||||||||||||||||||||||||||||||| |||||| || | |||||| |||||||| Sbjct: 253 gcgtagatgatgccggggatgtagccgaggaaggtgaggaggaggcagatccagaactc 311 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 334 agcggcggcaggatgatggcgaacaggat 362 ||||| |||||||||||||||| |||||| Sbjct: 343 agcggaggcaggatgatggcgatcaggat 371
>gb|AY103848.1| Zea mays PCO061754 mRNA sequence Length = 846 Score = 77.8 bits (39), Expect = 3e-11 Identities = 100/120 (83%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| ||||||||||| |||||| | | |||||| |||| Sbjct: 292 agacggcgtagatgatgccggggaggtagccgaggaaggtgaggataaggcagatccaga 233 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | ||||||||| || |||||| ||||||||||||||||||||||||| Sbjct: 232 actcaa---ccccgcagccgaacttgaagaagaccccgagcggcggcaggatgatggcga 176
>gb|BT017793.1| Zea mays clone EL01N0504G08.c mRNA sequence Length = 472 Score = 71.9 bits (36), Expect = 2e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactc 299 ||||| ||||||||||||||||||||||||| |||||| || | |||||| |||||||| Sbjct: 232 gcgtaaatgatgccggggatgtagccgaggaaggtgaggaggaggcagatccagaactc 174
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 232 acgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||||| ||||||| || |||||||| ||| ||||||||||||||||||| || || Sbjct: 4275600 acgtagacggcgtagaggacgccggggaggtacccgaggatggtgagcagcacgctaatc 4275659 Query: 292 cagaactccat 302 ||||||||||| Sbjct: 4275660 cagaactccat 4275670 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 303 gctgcagcagccgaagcggaggaagacgccgagcggcgg 341 ||||||| ||||| |||||| |||||||||||||||||| Sbjct: 26293296 gctgcagaagccgtagcggaagaagacgccgagcggcgg 26293258 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 305 tgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaacaggatct 364 |||||||||| ||||||| ||||||||||||| || |||| ||||||| | ||||||| Sbjct: 4275788 tgcagcagccatggcggaggcagacgccgagcggtgggaggaggatggcgcagaggatct 4275847 Query: 365 c 365 | Sbjct: 4275848 c 4275848
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 232 acgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||||| ||||||| || |||||||| ||| ||||||||||||||||||| || || Sbjct: 120821 acgtagacggcgtagaggacgccggggaggtacccgaggatggtgagcagcacgctaatc 120880 Query: 292 cagaactccat 302 ||||||||||| Sbjct: 120881 cagaactccat 120891 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 305 tgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcgaacaggatct 364 |||||||||| ||||||| ||||||||||||| || |||| ||||||| | ||||||| Sbjct: 121009 tgcagcagccatggcggaggcagacgccgagcggtgggaggaggatggcgcagaggatct 121068 Query: 365 c 365 | Sbjct: 121069 c 121069
>gb|AY823549.1| Pennisetum glaucum low temperature and salt responsive protein mRNA, complete cds Length = 565 Score = 69.9 bits (35), Expect = 7e-09 Identities = 99/120 (82%), Gaps = 3/120 (2%) Strand = Plus / Minus Query: 236 agaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcaga 295 |||| ||||||||||||||||||| |||||||| || |||||| | | |||||| |||| Sbjct: 291 agacggcgtagatgatgccggggaggtagccgaagaaggtgaggacgaggcagatccaga 232 Query: 296 actccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | | ||||||||| || |||||| ||||||||||||||||||||||||| Sbjct: 231 actcaa---ccccgcagccgaacttgaagaagaccccgagcggcggcaggatgatggcga 175
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 61.9 bits (31), Expect = 2e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 ||||||||||||||||| | ||| || |||||||||||||||| | ||| ||||||||| Sbjct: 36547 gcgtagatgatgccgggtaagtatcccaggatggtgagcagcagggcgatccagaactcc 36606 Query: 301 at 302 || Sbjct: 36607 at 36608 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 312 gccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 |||| |||||||||||||||||||||||||||| | |||||| Sbjct: 36687 gccgtagcggaggaagacgccgagcggcggcagcaggatggc 36728
>gb|U00966.1|U00966 Lophopyrum elongatum salt-stress induced hydrophobic peptide (ESI3) gene, complete cds Length = 652 Score = 60.0 bits (30), Expect = 7e-06 Identities = 62/73 (84%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 |||||||| |||||||||||||| || || ||||||||||| ||||| |||| | ||| Sbjct: 355 agcacgtacaccgcgtagatgatccccggtatgtagccgagtatggtcagcaagagacag 296 Query: 289 atgcagaactcca 301 || |||||||||| Sbjct: 295 atccagaactcca 283
>dbj|AB161677.1| Leymus chinensis AcPMP3-2 mRNA for plasma membrane protein 3, complete cds Length = 513 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/115 (82%), Gaps = 3/115 (2%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 |||||||| || || |||||| | ||||||| |||||||| | |||||| |||||||| Sbjct: 224 gcgtagataatacccgggatgaacccgaggaaggtgagcaagaggcagatccagaactc- 166 Query: 301 atgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 165 atgc--ccgcatccgaacttgaggaagacgccgaggggcgggaggatgatggcga 113
>gb|U39649.1| Caenorhabditis elegans cosmid T23F2, complete sequence Length = 26527 Score = 56.0 bits (28), Expect = 1e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 ||||||||||| ||||| ||||||||||| || |||||||| | ||||||| Sbjct: 22574 gcgtagatgattccgggaatgtagccgagaattgtgagcagaatgcagatg 22624 Score = 56.0 bits (28), Expect = 1e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||||||||||| || ||||| || |||||||||||||| | ||||||| Sbjct: 19839 gcgtagatgatgcctggaatgtatcccaggatggtgagcagaatgcagatg 19889
>ref|NM_076534.1| Caenorhabditis elegans T23F2.4 (T23F2.4) mRNA, complete cds Length = 234 Score = 56.0 bits (28), Expect = 1e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 ||||||||||| ||||| ||||||||||| || |||||||| | ||||||| Sbjct: 209 gcgtagatgattccgggaatgtagccgagaattgtgagcagaatgcagatg 159
>ref|NM_076533.3| Caenorhabditis elegans T23F2.3 (T23F2.3) mRNA, complete cds Length = 295 Score = 56.0 bits (28), Expect = 1e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 |||||||||||||| || ||||| || |||||||||||||| | ||||||| Sbjct: 172 gcgtagatgatgcctggaatgtatcccaggatggtgagcagaatgcagatg 122
>dbj|AK108564.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C08, full insert sequence Length = 850 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 294 gaactccatgctgcagcagccgaagcggaggaagacgccgagcggcgg 341 ||||||| ||||||| ||||| |||||| |||||||||||||||||| Sbjct: 262 gaactccgagctgcagaagccgtagcggaagaagacgccgagcggcgg 215
>ref|XM_470667.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 165 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 76 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 34 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 155 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 104
>ref|NM_184595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 195 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || |||||||||||||||| Sbjct: 93 gaggaagacgccgaggggaggcaggatgatggcga 59
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || |||||||||||||||| Sbjct: 14387616 gaggaagacgccgaggggaggcaggatgatggcga 14387650 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 9872202 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 9872244 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 9871999 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 9872050
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || |||||||||||||||| Sbjct: 136845 gaggaagacgccgaggggaggcaggatgatggcga 136879
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || |||||||||||||||| Sbjct: 14382591 gaggaagacgccgaggggaggcaggatgatggcga 14382625 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 9870323 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 9870365 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 9870120 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 9870171
>gb|AY177891.1| Sorghum bicolor clone BAC 8070 ABA-induced gene, partial sequence Length = 3374 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 309 gcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 ||||||| |||| ||||||||||||| |||||| |||| |||||||| Sbjct: 2070 gcagccgtagcgcaggaagacgccgaccggcgggaggaagatggcga 2024
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 34591 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 34633 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 34388 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 34439
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 2295 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 2253 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 2498 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 2447
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 303 gctgcagcagccgaagcggaggaagacgccgagcggcgg 341 ||||||| ||||| |||||| |||||||||||||||||| Sbjct: 157836 gctgcagaagccgtagcggaagaagacgccgagcggcgg 157798
>dbj|AK070872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071K01, full insert sequence Length = 488 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 311 agccgaagcggaggaagacgccgagcggcggcaggatgatggc 353 ||||| |||| ||||||||||||| ||||||||||| |||||| Sbjct: 171 agccgtagcgcaggaagacgccgaccggcggcaggaagatggc 129 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagca 280 ||||| || |||||||||||||| || |||||||| || || ||||| |||| Sbjct: 250 agcacatacaccgcgtagatgatccccgggatgtatcccagtatggtcagca 199
>gb|AY105302.1| Zea mays PCO074610 mRNA sequence Length = 553 Score = 54.0 bits (27), Expect = 4e-04 Identities = 94/116 (81%), Gaps = 3/116 (2%) Strand = Plus / Minus Query: 240 cgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactc 299 |||||||||||| ||||||| ||| |||||| ||||||||| | ||||| ||||| || Sbjct: 215 cgcgtagatgatcccggggagataggcgaggaaggtgagcaggaggcagagccagaattc 156 Query: 300 catgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 | | ||||||||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 155 gacctt---gcagccgaacttgaggaagacgccgagaggcgggaggatgatggcga 103
>ref|NM_183567.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 Score = 48.1 bits (24), Expect = 0.026 Identities = 97/121 (80%), Gaps = 3/121 (2%) Strand = Plus / Minus Query: 235 tagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcag 294 ||||||||||||||||| || |||| ||||||| || ||||||||| | |||| ||| Sbjct: 155 tagaccgcgtagatgatccccgggagatagccgaagaaggtgagcagaagacagagccag 96 Query: 295 aactccatgctgcagcagccgaagcggaggaagacgccgagcggcggcaggatgatggcg 354 ||||||| |||| | |||| ||||||||||||||| || || |||||||||||| Sbjct: 95 aactccaccttgcatc---cgaacttgaggaagacgccgagaggagggaggatgatggcg 39 Query: 355 a 355 | Sbjct: 38 a 38
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.026 Identities = 56/67 (83%) Strand = Plus / Minus Query: 235 tagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcag 294 ||||||||||||||||| || |||| ||||||| || ||||||||| | |||| ||| Sbjct: 10331939 tagaccgcgtagatgatccccgggagatagccgaagaaggtgagcagaagacagagccag 10331880 Query: 295 aactcca 301 ||||||| Sbjct: 10331879 aactcca 10331873 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || || ||||||||||||| Sbjct: 10331703 gaggaagacgccgagaggagggaggatgatggcga 10331669 Score = 42.1 bits (21), Expect = 1.6 Identities = 50/60 (83%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 |||||||||||||| || | ||||||||| |||||| || | |||||| ||||||||| Sbjct: 10317925 gcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatccagaactcc 10317866
>gb|AE004493.1| Pseudomonas aeruginosa PAO1, section 54 of 529 of the complete genome Length = 11746 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Minus Query: 238 accgcgtagatgatgccggggatgtagccgaggatggtgagcag 281 ||||||| || |||||| |||||||||||||| | ||||||||| Sbjct: 261 accgcgtggacgatgcccgggatgtagccgagcagggtgagcag 218 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 322 aggaagacgccgagcggcggcaggatgatggcga 355 ||||| ||||| ||||||||||||| |||||||| Sbjct: 180 aggaacacgcccagcggcggcaggaggatggcga 147
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0511C01 Length = 170402 Score = 48.1 bits (24), Expect = 0.026 Identities = 56/67 (83%) Strand = Plus / Minus Query: 235 tagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcag 294 ||||||||||||||||| || |||| ||||||| || ||||||||| | |||| ||| Sbjct: 38659 tagaccgcgtagatgatccccgggagatagccgaagaaggtgagcagaagacagagccag 38600 Query: 295 aactcca 301 ||||||| Sbjct: 38599 aactcca 38593 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 321 gaggaagacgccgagcggcggcaggatgatggcga 355 ||||||||||||||| || || ||||||||||||| Sbjct: 38423 gaggaagacgccgagaggagggaggatgatggcga 38389 Score = 42.1 bits (21), Expect = 1.6 Identities = 50/60 (83%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 |||||||||||||| || | ||||||||| |||||| || | |||||| ||||||||| Sbjct: 24645 gcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatccagaactcc 24586
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 320 ggaggaagacgccgagcggcggcaggatgatggcga 355 ||||||| || || |||||||||||||||||||||| Sbjct: 5424400 ggaggaacacccccagcggcggcaggatgatggcga 5424435
>dbj|AK058343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D10, full insert sequence Length = 590 Score = 48.1 bits (24), Expect = 0.026 Identities = 56/67 (83%) Strand = Plus / Minus Query: 235 tagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcag 294 ||||||||||||||||| || |||| ||||||| || ||||||||| | |||| ||| Sbjct: 78 tagaccgcgtagatgatccccgggagatagccgaagaaggtgagcagaagacagagccag 19 Query: 295 aactcca 301 ||||||| Sbjct: 18 aactcca 12
>dbj|AB221353.1| Triticum aestivum wpi6 gene for plasma membrane protein, complete cds Length = 596 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 317 agcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| ||||||||||||| || |||||||||||||||| Sbjct: 141 agcgcaggaagacgccgacgggaggcaggatgatggcga 103 Score = 44.1 bits (22), Expect = 0.41 Identities = 60/73 (82%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 |||||||| |||||||||||||| || || ||||| || || ||||| |||| | ||| Sbjct: 324 agcacgtacaccgcgtagatgatccccggtatgtaccccagtatggtcagcaagagacag 265 Query: 289 atgcagaactcca 301 || |||||||||| Sbjct: 264 atccagaactcca 252
>dbj|AB030210.1| Triticum aestivum wpi6 mRNA for hydrophobic polypeptide, complete cds Length = 507 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 317 agcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| ||||||||||||| || |||||||||||||||| Sbjct: 119 agcgcaggaagacgccgacgggaggcaggatgatggcga 81 Score = 44.1 bits (22), Expect = 0.41 Identities = 60/73 (82%) Strand = Plus / Minus Query: 229 agcacgtagaccgcgtagatgatgccggggatgtagccgaggatggtgagcagcangcag 288 |||||||| |||||||||||||| || || ||||| || || ||||| |||| | ||| Sbjct: 204 agcacgtacaccgcgtagatgatccccggtatgtaccccagtatggtcagcaagagacag 145 Query: 289 atgcagaactcca 301 || |||||||||| Sbjct: 144 atccagaactcca 132
>gb|AC009975.9| Homo sapiens BAC clone RP11-460M2 from 2, complete sequence Length = 211305 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 59 tttacagactcacagaaagaagg 81 ||||||||||||||||||||||| Sbjct: 140224 tttacagactcacagaaagaagg 140202
>emb|AJ310994.1|HVU310994 Hordeum vulgare lt101.1 gene for putative membrane protein Length = 2288 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 317 agcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 1481 agcgcaggaagacgccgaccggtggcagaatgatggcga 1443
>emb|Z25537.1|HVBLT101 H.vulgare blt101 mRNA Length = 521 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 317 agcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| ||||||||||||| ||| ||||| |||||||||| Sbjct: 116 agcgcaggaagacgccgaccggtggcagaatgatggcga 78
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 234 gtagaccgcgtagatgatgccggggatgta 263 ||||| ||||| |||||||||||||||||| Sbjct: 5542401 gtagatcgcgtggatgatgccggggatgta 5542430
>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10, complete sequence Length = 132400 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 416 gggagatctctcccttgctctg 437 |||||||||||||||||||||| Sbjct: 115660 gggagatctctcccttgctctg 115681
>emb|CR753900.9| Zebrafish DNA sequence from clone CH211-167B13 in linkage group 10, complete sequence Length = 113731 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 416 gggagatctctcccttgctctg 437 |||||||||||||||||||||| Sbjct: 9893 gggagatctctcccttgctctg 9872
>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20, complete sequence Length = 98841 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 416 gggagatctctcccttgctctg 437 |||||||||||||||||||||| Sbjct: 51600 gggagatctctcccttgctctg 51579
>gb|M55663.1|MUSMHEBH2D Mouse MHC class II E-beta gene (H-2-d haplotype), intron Length = 1411 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 tggggtcggggaaggaaggagc 475 |||||||||||||||||||||| Sbjct: 232 tggggtcggggaaggaaggagc 253
>gb|K00123.1|MUSMHEB1 Mouse MHC class II H2-IE-beta gene (haplotype d), exon 1 Length = 466 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 tggggtcggggaaggaaggagc 475 |||||||||||||||||||||| Sbjct: 420 tggggtcggggaaggaaggagc 441
>ref|NM_183563.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 42.1 bits (21), Expect = 1.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatgcagaactcc 300 |||||||||||||| || | ||||||||| |||||| || | |||||| ||||||||| Sbjct: 26 gcgtagatgatgcccggaagatagccgaggcaggtgaggagaaggcagatccagaactcc 85
>ref|XM_420246.1| PREDICTED: Gallus gallus similar to sushi-repeat protein (LOC422261), mRNA Length = 2261 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 agatgcagaactccatgctgcagca 311 ||||||||| ||||||||||||||| Sbjct: 1418 agatgcagatctccatgctgcagca 1442
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 3075650 acgccgagcggcggcagaatgatgg 3075674
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 2951838 acgccgagcggcggcagaatgatgg 2951862
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 2795001 acgccgagcggcggcagaatgatgg 2795025
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 2795635 acgccgagcggcggcagaatgatgg 2795659
>gb|U13651.1|MMU13651 Mus musculus domesticus MHC class II antigen H-2E beta (allele w29) gene, exon 1, partial cds Length = 239 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 123 ggggtcggggaaggaaggagc 143
>gb|U13650.1|MMU13650 Mus musculus domesticus MHC class II antigen H-2E beta (allele ar1) gene, exon 1, partial cds Length = 239 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 123 ggggtcggggaaggaaggagc 143
>gb|U13653.1|MMW302S1 Mus musculus domesticus MHC class II antigen H-2E beta (allele w302) gene, exon 1 Length = 240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 124 ggggtcggggaaggaaggagc 144
>gb|U13652.1|MMW301S1 Mus musculus bactrianus MHC class II antigen H-2E beta (allele w301) gene, exon 1 Length = 239 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 123 ggggtcggggaaggaaggagc 143
>gb|AC084641.1|CBRG45J09 Caenorhabditis briggsae cosmid G45J09, complete sequence Length = 46744 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcag 281 |||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 14992 gcgtggatgattcctgggatgtatccgagaatggtgagcag 14952 Score = 40.1 bits (20), Expect = 6.4 Identities = 43/51 (84%) Strand = Plus / Minus Query: 241 gcgtagatgatgccggggatgtagccgaggatggtgagcagcangcagatg 291 ||||||||||| || || ||||| ||||| |||||||| || | ||||||| Sbjct: 18230 gcgtagatgattcctggaatgtatccgagaatggtgagaaggatgcagatg 18180
>gb|AC092408.3| Papio anubis clone RP41-446H8, complete sequence Length = 184036 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 tgtagccgaggatggtgagca 280 ||||||||||||||||||||| Sbjct: 90076 tgtagccgaggatggtgagca 90056
>ref|XM_552688.1| Anopheles gambiae str. PEST ENSANGP00000028886 (ENSANGG00000024588), partial mRNA Length = 3639 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tcgcggtcctccgagccgagc 222 ||||||||||||||||||||| Sbjct: 1787 tcgcggtcctccgagccgagc 1767
>gb|AY105490.1| Zea mays PCO147287 mRNA sequence Length = 727 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 gaagcggaggaagacgccgagcggc 339 ||||| ||||||||||||||||||| Sbjct: 388 gaagccgaggaagacgccgagcggc 364
>emb|CR974422.14| Mouse DNA sequence from clone RP23-123G8 on chromosome 17, complete sequence Length = 189049 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 173194 ggggtcggggaaggaaggagc 173214
>gb|AC154269.1| Mus musculus BAC clone RP24-259B17 from 13, complete sequence Length = 170931 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 ccatgctgcagcagccgaagc 319 ||||||||||||||||||||| Sbjct: 46866 ccatgctgcagcagccgaagc 46886
>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major histocompatibility protein class II alpha chain (IAalpha) and major histocompatibility protein class II beta chain (IEbeta) genes, complete cds; butyrophilin-like (NG9), butyrophilin-like (NG10), hypothetical protein (NG8), and butyrophilin-like (NG11) genes, partial cds; NG12 pseudogene, partial sequence; and hypothetical butyrophilin-like protein (NG13) gene, partial cds Length = 245439 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 27450 ggggtcggggaaggaaggagc 27470
>gb|AC173209.3| Mus musculus BAC clone RP24-316K19 from chromosome 13, complete sequence Length = 179701 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ccatgctgcagcagccgaagc 319 ||||||||||||||||||||| Sbjct: 31669 ccatgctgcagcagccgaagc 31649
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 3586456 acgccgagcggcggcagaatgatgg 3586480
>gb|M23693.1|MUSW17A01 Mus musculus castaneus MHC class II H2-IA-beta pseudogene, exon 1, and promoter region, haplotype w17 Length = 574 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 427 ggggtcggggaaggaaggagc 447
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 3519166 acgccgagcggcggcagaatgatgg 3519190
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 2645103 acgccgagcggcggcagaatgatgg 2645127
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 acgccgagcggcggcaggatgatgg 352 ||||||||||||||||| ||||||| Sbjct: 2857327 acgccgagcggcggcagaatgatgg 2857303
>gb|M35680.1|MUSMHEBQ1 Mouses MHC class II E-beta-q gene, exon 1 Length = 574 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 427 ggggtcggggaaggaaggagc 447
>gb|M35677.1|MUSMHEBF1 Mouses MHC class II E-beta-f gene, exon 1 Length = 573 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggagc 475 ||||||||||||||||||||| Sbjct: 426 ggggtcggggaaggaaggagc 446
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 250 atgccggggatgtagccgaggatggtgagcag 281 |||||||| ||||| ||||||||||| ||||| Sbjct: 1810986 atgccgggaatgtaaccgaggatggtcagcag 1811017
>gb|AC153544.4| Mus musculus 10 BAC RP23-326C6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215036 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 gggggttgggtctggggtcg 461 |||||||||||||||||||| Sbjct: 5219 gggggttgggtctggggtcg 5200
>ref|XM_754159.1| Ustilago maydis 521 hypothetical protein (UM03105.1) partial mRNA Length = 1884 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tgcagcagccgaagcggagg 324 |||||||||||||||||||| Sbjct: 66 tgcagcagccgaagcggagg 47
>emb|AL591793.1|SME591793 Sinorhizobium meliloti 1021 complete chromosome; segment 12/12 Length = 273785 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gccgagcggcggcaggatga 349 |||||||||||||||||||| Sbjct: 149058 gccgagcggcggcaggatga 149039
>gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimycin polyketide biosynthetic gene cluster, complete sequence Length = 86941 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gccgagcgcgacgagcacgt 235 |||||||||||||||||||| Sbjct: 35224 gccgagcgcgacgagcacgt 35205
>gb|AC119676.2| Homo sapiens chromosome 1 clone RP5-820O16, complete sequence Length = 160573 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 gcagatgcagaactccatgctgca 308 |||||||||||||||||| ||||| Sbjct: 146261 gcagatgcagaactccatcctgca 146284
>gb|AC007741.4| Homo sapiens BAC clone RP11-340F16 from 2, complete sequence Length = 123295 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 ggggtcggggaaggaaggag 474 |||||||||||||||||||| Sbjct: 117971 ggggtcggggaaggaaggag 117990
>emb|AJ310995.1|HVU310995 Hordeum vulgare lt101.2 gene for putative membrane protein Length = 3081 Score = 40.1 bits (20), Expect = 6.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 312 gccgaagcggaggaagacgccgagcggcggcaggatgatggcga 355 |||| |||| ||||||||||| | || |||||||||||||||| Sbjct: 545 gccgtagcgcaggaagacgcctactggaggcaggatgatggcga 502
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 449 gggtctggggtcggggaaggaagg 472 ||||||||||||||||| |||||| Sbjct: 65861 gggtctggggtcggggagggaagg 65838
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 atctcggatcggatcggggg 418 |||||||||||||||||||| Sbjct: 663699 atctcggatcggatcggggg 663718
>dbj|AP005899.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-143J12, complete sequence Length = 155671 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aaggtgcagctccgggacgc 389 |||||||||||||||||||| Sbjct: 136572 aaggtgcagctccgggacgc 136591
>gb|AC153484.4| Mus musculus 10 BAC RP23-388B8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 166648 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 gggggttgggtctggggtcg 461 |||||||||||||||||||| Sbjct: 130361 gggggttgggtctggggtcg 130342
>dbj|AP005263.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-21J18, complete sequence Length = 154926 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aaggtgcagctccgggacgc 389 |||||||||||||||||||| Sbjct: 49467 aaggtgcagctccgggacgc 49486
>emb|AL929197.6| Mouse DNA sequence from clone RP23-47C18 on chromosome 2, complete sequence Length = 46845 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 atatggaaacacacagcgtc 116 |||||||||||||||||||| Sbjct: 24187 atatggaaacacacagcgtc 24168
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttacagactcacagaaagaa 79 |||||||||||||||||||| Sbjct: 124548 ttacagactcacagaaagaa 124567
>dbj|D64176.1|HUMNDUFV2 Human NDUFV2 gene for 24-kDa subunit of complex I, exon 1 Length = 780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aaggtgcagctccgggacgc 389 |||||||||||||||||||| Sbjct: 160 aaggtgcagctccgggacgc 179
>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171 region, complete sequence Length = 158063 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 449 gggtctggggtcggggaaggaagg 472 ||||||||||||||||| |||||| Sbjct: 65861 gggtctggggtcggggagggaagg 65838 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,617,904 Number of Sequences: 3902068 Number of extensions: 3617904 Number of successful extensions: 61342 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60589 Number of HSP's gapped (non-prelim): 750 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)