ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP7A1_RABIT (P51542) Cytochrome P450 7A1 (EC 1.14.13.17) (Choles... 31 1.8
2GTR8_MOUSE (Q9JIF3) Solute carrier family 2, facilitated glucose... 30 4.0
3GTR5_RAT (P43427) Solute carrier family 2, facilitated glucose t... 30 5.2
4GTR6_HUMAN (Q9UGQ3) Solute carrier family 2, facilitated glucose... 30 5.2
5CSBC_BACSU (P46333) Probable metabolite transport protein csbC 30 5.2
6GGT1_PIG (P20735) Gamma-glutamyltranspeptidase 1 precursor (EC 2... 30 5.2
7MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-... 29 8.9
8YFIG_BACSU (P54723) Hypothetical metabolite transport protein yfiG 29 8.9
9SYS_PYRAE (Q8ZTP4) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--... 29 8.9

>CP7A1_RABIT (P51542) Cytochrome P450 7A1 (EC 1.14.13.17) (Cholesterol|
           7-alpha-monooxygenase) (CYPVII) (Cholesterol
           7-alpha-hydroxylase)
          Length = 501

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
 Frame = -2

Query: 354 WTWG------CCLWLLCSSRNKRAAGPP 289
           W WG      CCLWL+   R +R   PP
Sbjct: 6   WIWGICLSVCCCLWLILGLRRRRMGEPP 33



to top

>GTR8_MOUSE (Q9JIF3) Solute carrier family 2, facilitated glucose transporter|
           member 8 (Glucose transporter type 8) (Glucose
           transporter type X1)
          Length = 477

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -3

Query: 518 ASVCALAVLYIAGNVVETKGRSLQEI 441
           A+ CAL+VL+    V ETKGR+L+++
Sbjct: 445 AAFCALSVLFTLTVVPETKGRTLEQV 470



to top

>GTR5_RAT (P43427) Solute carrier family 2, facilitated glucose transporter|
           member 5 (Glucose transporter type 5, small intestine)
           (Fructose transporter)
          Length = 502

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 518 ASVCALAVLYIAGNVVETKGRSLQEIERELSPASKV 411
           A +C L  +YI   V ETKGR+  EI +  +  +KV
Sbjct: 445 AIICLLTTIYIFMVVPETKGRTFVEINQIFAKKNKV 480



to top

>GTR6_HUMAN (Q9UGQ3) Solute carrier family 2, facilitated glucose transporter|
           member 6 (Glucose transporter type 6) (Glucose
           transporter type 9)
          Length = 507

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -3

Query: 518 ASVCALAVLYIAGNVVETKGRSLQEIE 438
           A++C +++++    V ETKGRSL++IE
Sbjct: 469 AAICLVSLVFTGCCVPETKGRSLEQIE 495



to top

>CSBC_BACSU (P46333) Probable metabolite transport protein csbC|
          Length = 461

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 512 VCALAVLYIAGNVVETKGRSLQEIERELSPASKVDASNAFLVSDE 378
           +C L+  +    V ETKG+SL+EIE  L    K   S    V +E
Sbjct: 414 ICLLSFFFAFYMVPETKGKSLEEIEASLKKRFKKKKSTQNQVLNE 458



to top

>GGT1_PIG (P20735) Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)|
           (Gamma-glutamyltransferase 1) (GGT 1) (CD224 antigen)
           [Contains: Gamma-glutamyltranspeptidase 1 heavy chain;
           Gamma-glutamyltranspeptidase 1 light chain]
          Length = 568

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
 Frame = -2

Query: 345 GCCLWLLCSSR-----NKRAAGPPDAIR-------TDRDSGFAVSASKAQLLLITSQN 208
           G CLWL  +S+       RAA   DA+R       T RD G AV A+ A LL +   N
Sbjct: 21  GLCLWLPSNSKPHNHVYPRAAVAADALRCSEIGRDTLRDGGSAVDAAIAALLCVGLMN 78



to top

>MYCT_HUMAN (Q96QE2) Proton myo-inositol cotransporter (H(+)-myo-inositol|
           cotransporter) (Hmit)
          Length = 629

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 518 ASVCALAVLYIAGNVVETKGRSLQEIE 438
           A   A+ +L+I G + ETKG+ L+EIE
Sbjct: 561 AGFAAVGLLFIYGCLPETKGKKLEEIE 587



to top

>YFIG_BACSU (P54723) Hypothetical metabolite transport protein yfiG|
          Length = 482

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -3

Query: 503 LAVLYIAGNVVETKGRSLQEIE 438
           LA+L++   V ETKGRSL+++E
Sbjct: 439 LAILFVKKYVPETKGRSLEQLE 460



to top

>SYS_PYRAE (Q8ZTP4) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 451

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +2

Query: 248 DTANPESRSVRMASGGPAARLFRELHKSQRQHPQVQGRLCSMLIRRSPKRRYLHRLCWPG 427
           D   P ++   +    P+  ++REL            RL   + R+  KR Y+H L   G
Sbjct: 342 DLGAPAAKKYDIEVWYPSQGMYRELASCSNVTDWQSYRLGIRVTRKGMKREYVHTLNCTG 401

Query: 428 LVPARSLVGI 457
           L   R++  I
Sbjct: 402 LATTRTITAI 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,162,950
Number of Sequences: 219361
Number of extensions: 1297001
Number of successful extensions: 3291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3283
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top