>gb|BT018814.1| Zea mays clone EL01N0531A02.d mRNA sequence
          Length = 2008

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 442  atctcttgtagggatcgccccttggtctcgaccacattgccggctatgtacag 494
            |||||||  ||||||| |||||||| |||||||||||| || |||||||||||
Sbjct: 1720 atctcttcaagggatctccccttgggctcgaccacattcccagctatgtacag 1668

>gb|AF215854.1|AF215854 Zea mays hexose transporter (pGlcT) mRNA, partial cds; nuclear gene
            for chloroplast product
          Length = 1874

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 454  gatcgccccttggtctcgaccacattgccggctatgtacag 494
            |||| ||||||||||||||||||||| || |||||||||||
Sbjct: 1590 gatctccccttggtctcgaccacattcccagctatgtacag 1550

>gb|AY112449.1| Zea mays CL1214_1 mRNA sequence
          Length = 1905

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 454  gatcgccccttggtctcgaccacattgccggctatgtacag 494
            |||| ||||||||||||||||||||| || |||||||||||
Sbjct: 1590 gatctccccttggtctcgaccacattcccagctatgtacag 1550

>ref|XM_550032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1980

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  cccgctcgatctcttgtagggatcgccccttggtctcgaccacattgccggctatgta 491
            ||||||| |||||||  || || |||||||||||||| |||||||| || ||||||||
Sbjct: 1609 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgta 1552

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                         
Query: 434     cccgctcgatctcttgtagggatcgccccttggtctcgaccacattgccggctatgta 491
               ||||||| |||||||  || || |||||||||||||| |||||||| || ||||||||
Sbjct: 1847731 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgta 1847674

>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 434   cccgctcgatctcttgtagggatcgccccttggtctcgaccacattgccggctatgta 491
             ||||||| |||||||  || || |||||||||||||| |||||||| || ||||||||
Sbjct: 89113 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgta 89056

>dbj|AK065247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J01, full
            insert sequence
          Length = 1982

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  cccgctcgatctcttgtagggatcgccccttggtctcgaccacattgccggctatgta 491
            ||||||| |||||||  || || |||||||||||||| |||||||| || ||||||||
Sbjct: 1609 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgta 1552

>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 189   acaacacagcagctctttgatt 210
             ||||||||||||||||||||||
Sbjct: 31032 acaacacagcagctctttgatt 31053

>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 137    gatgacatccaaggactagca 157
              |||||||||||||||||||||
Sbjct: 127198 gatgacatccaaggactagca 127218

>gb|AC167243.3| Mus musculus BAC clone RP24-144E2 from chromosome 9, complete sequence
          Length = 193364

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   ctggcagacacagcaaaccc 261
             ||||||||||||||||||||
Sbjct: 69228 ctggcagacacagcaaaccc 69247

>gb|BC100141.1| Rattus norvegicus HLA-B-associated transcript 3, transcript variant
            1, mRNA (cDNA clone MGC:114288 IMAGE:7315623), complete
            cds
          Length = 3651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  cagaggcagcatccccaggt 351
            ||||||||||||||||||||
Sbjct: 1284 cagaggcagcatccccaggt 1303

>ref|NM_182844.1| Rattus norvegicus myosin VIIA and Rab interacting protein (Myrip),
           mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305

>gb|AC137848.31| Mus musculus chromosome 9, clone RP24-118I23, complete sequence
          Length = 190317

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    ctggcagacacagcaaaccc 261
              ||||||||||||||||||||
Sbjct: 101303 ctggcagacacagcaaaccc 101284

>ref|NM_001033968.1| Rattus norvegicus HLA-B-associated transcript 3 (Bat3), transcript
            variant 1, mRNA
          Length = 3651

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  cagaggcagcatccccaggt 351
            ||||||||||||||||||||
Sbjct: 1284 cagaggcagcatccccaggt 1303

>ref|NM_053609.2| Rattus norvegicus HLA-B-associated transcript 3 (Bat3), transcript
            variant 2, mRNA
          Length = 3659

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  cagaggcagcatccccaggt 351
            ||||||||||||||||||||
Sbjct: 1442 cagaggcagcatccccaggt 1461

>gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, complete sequence
          Length = 176493

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  agcaacaacacagcagctct 204
            ||||||||||||||||||||
Sbjct: 981  agcaacaacacagcagctct 1000

>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   agcaacaacacagcagctct 204
             ||||||||||||||||||||
Sbjct: 53538 agcaacaacacagcagctct 53519

>ref|XM_001001862.1| PREDICTED: Mus musculus myosin VIIA and Rab interacting protein,
           transcript variant 1 (Myrip), mRNA
          Length = 3395

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 485 ctggcagacacagcaaaccc 466

>ref|XM_001001869.1| PREDICTED: Mus musculus myosin VIIA and Rab interacting protein,
           transcript variant 2 (Myrip), mRNA
          Length = 3421

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 485 ctggcagacacagcaaaccc 466

>emb|AJ508935.1|PFR508935 Propionibacterium freudenreichii subsp. shermanii eno1 gene for
           enolase 1
          Length = 1290

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 464 tggtctcgaccacattgccg 483
           ||||||||||||||||||||
Sbjct: 223 tggtctcgaccacattgccg 204

>gb|AY294063.1| Pinus monticola putative NBS-LRR protein GI5033 (RGA) gene, partial
           cds
          Length = 516

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 tgattctgagatgtgatgag 225
           ||||||||||||||||||||
Sbjct: 338 tgattctgagatgtgatgag 319

>gb|AY331984.1| Rattus norvegicus myosin VIIA and Rab interacting protein (Myrip)
           mRNA, complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305

>emb|AL035687.13|HS142O9 Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3
             Contains a eukaryotic translation elongation factor 1
             alpha 1 (EEF1A1) pseudogene and a zinc finger (ZNF216)
             pseudogene, complete sequence
          Length = 131546

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    agttttatttcctaatgatg 101
             ||||||||||||||||||||
Sbjct: 45500 agttttatttcctaatgatg 45519

>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    cagaggcagcatccccaggt 351
              ||||||||||||||||||||
Sbjct: 339245 cagaggcagcatccccaggt 339264

>gb|AY099470.1| Mus musculus exophilin 8 mRNA, complete cds
          Length = 2670

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 360 ctggcagacacagcaaaccc 341

>gb|AF396688.1| Mus musculus rab effector MYRIP (Myrip) mRNA, complete cds
          Length = 2632

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 347 ctggcagacacagcaaaccc 328

>dbj|AK148358.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
           library, clone:G370108P05 product:myosin VIIA and Rab
           interacting protein, full insert sequence
          Length = 3862

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 603 ctggcagacacagcaaaccc 584

>dbj|AK038988.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230081N12 product:hypothetical
           FYVE/PHD zinc finger structure containing protein, full
           insert sequence
          Length = 3512

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 439 ctggcagacacagcaaaccc 420

>dbj|AK083225.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630029J04 product:hypothetical
           Cysteine-rich region containing protein, full insert
           sequence
          Length = 4763

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 486 ctggcagacacagcaaaccc 467

>gb|AY585926.1| Paxillus involutus strain ATCC 200175 CipC1 protein (cipC1) mRNA,
           complete cds
          Length = 435

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 tcgccccttggtctcgacca 475
           ||||||||||||||||||||
Sbjct: 284 tcgccccttggtctcgacca 265

>gb|AC147283.3| Pan troglodytes BAC clone RP43-94K2 from chromosome 7, complete sequence
          Length = 171112

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 205    ttgattctgagatgtgatgagaag 228
              |||||||||||||||| |||||||
Sbjct: 131739 ttgattctgagatgtgttgagaag 131716

>gb|AC083861.2|AC083861 Homo sapiens chromosome 7 clone RP11-164E6, complete sequence
          Length = 147288

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   ttgattctgagatgtgatgagaag 228
             |||||||||||||||| |||||||
Sbjct: 11520 ttgattctgagatgtgttgagaag 11543

>gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-15, complete sequence
          Length = 156940

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 205    ttgattctgagatgtgatgagaag 228
              |||||||||||||||| |||||||
Sbjct: 116498 ttgattctgagatgtgttgagaag 116521

>dbj|AB083782.1| Mus musculus slac2-c mRNA for Slp homologue lacking C2 domains-c,
           complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305

>ref|NM_144557.2| Mus musculus myosin VIIA and Rab interacting protein (Myrip), mRNA
          Length = 4763

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 ctggcagacacagcaaaccc 261
           ||||||||||||||||||||
Sbjct: 486 ctggcagacacagcaaaccc 467

>dbj|AB018791.1| Rattus norvegicus mRNA for BAT3, complete cds
          Length = 3617

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  cagaggcagcatccccaggt 351
            ||||||||||||||||||||
Sbjct: 1398 cagaggcagcatccccaggt 1417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,244,031
Number of Sequences: 3902068
Number of extensions: 3244031
Number of successful extensions: 53476
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53419
Number of HSP's gapped (non-prelim): 57
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)