ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMOT_HUMAN (Q4VCS5) Angiomotin 32 1.7
2T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspa... 30 3.9
3ZN533_BRARE (Q6PBT9) Zinc finger protein 533 30 3.9
4ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 ant... 30 5.0
5PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (... 30 5.0
6MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP) 30 5.0
7SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 8.6

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
 Frame = -2

Query: 577  PQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSPQWFAAVHAAVPFIAMLRKSVNMPRTA 398
            P P+ A   A A+   AA +        T   +    A   AA P  A          TA
Sbjct: 884  PAPVAAAATAAAITATAATIT-------TTMVAAAPVAVAAAAAPAAAAAPSPATAAATA 936

Query: 397  MVFTIAASILGQ-----TIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGK 233
               + AA+  GQ     ++ S A        AA     PAA   V  P      + A  +
Sbjct: 937  AAVSPAAA--GQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQ 994

Query: 232  AWDPLALKIPGSANAGAPAPTPS 164
            A  P   + P SA A AP P P+
Sbjct: 995  ASAPAQTQAPTSAPAVAPTPAPT 1017



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>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan|
           transmembrane protein L6H)
          Length = 197

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +3

Query: 363 CPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTAANHWGENFLVCSRHTPRGTFAAIPSI 542
           C R     + T+ ++ ++ + L +  NG  +WT  NH      +       G     P I
Sbjct: 6   CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65

Query: 543 AMATIFAGRGC 575
           A A    G+GC
Sbjct: 66  A-AVRAGGKGC 75



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>ZN533_BRARE (Q6PBT9) Zinc finger protein 533|
          Length = 492

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 328 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 173
           KT+ +  T     T T       + SCSD   K+ +PLA  K+P S  A  PAP
Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245



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>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 187 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRVVL 17
           GAP P  ++         PG+ ++L  + L  LPL     + C+   +CC+ C  +L
Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALL 746



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>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1338

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 336 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 464
           ++S LDP V  R+  A   T  V  ++TD   +  +G   W A
Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772



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>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)|
          Length = 642

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 265 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 164
           +SG   DA G  + PL    P  A A APAP P+
Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310



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>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 97  PITYTINRNQYPGRLNSTVR 156
           PI Y +N+NQYPG   S VR
Sbjct: 436 PIWYDVNKNQYPGISESDVR 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,915,585
Number of Sequences: 219361
Number of extensions: 1814195
Number of successful extensions: 5196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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