Clone Name | rbasd2d09 |
---|---|
Clone Library Name | barley_pub |
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 31.6 bits (70), Expect = 1.7 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 5/143 (3%) Frame = -2 Query: 577 PQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSPQWFAAVHAAVPFIAMLRKSVNMPRTA 398 P P+ A A A+ AA + T + A AA P A TA Sbjct: 884 PAPVAAAATAAAITATAATIT-------TTMVAAAPVAVAAAAAPAAAAAPSPATAAATA 936 Query: 397 MVFTIAASILGQ-----TIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGK 233 + AA+ GQ ++ S A AA PAA V P + A + Sbjct: 937 AAVSPAAA--GQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQ 994 Query: 232 AWDPLALKIPGSANAGAPAPTPS 164 A P + P SA A AP P P+ Sbjct: 995 ASAPAQTQAPTSAPAVAPTPAPT 1017
>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan| transmembrane protein L6H) Length = 197 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/71 (25%), Positives = 29/71 (40%) Frame = +3 Query: 363 CPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTAANHWGENFLVCSRHTPRGTFAAIPSI 542 C R + T+ ++ ++ + L + NG +WT NH + G P I Sbjct: 6 CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65 Query: 543 AMATIFAGRGC 575 A A G+GC Sbjct: 66 A-AVRAGGKGC 75
>ZN533_BRARE (Q6PBT9) Zinc finger protein 533| Length = 492 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 328 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 173 KT+ + T T T + SCSD K+ +PLA K+P S A PAP Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 187 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRVVL 17 GAP P ++ PG+ ++L + L LPL + C+ +CC+ C +L Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALL 746
>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1338 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 336 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 464 ++S LDP V R+ A T V ++TD + +G W A Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 265 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 164 +SG DA G + PL P A A APAP P+ Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310
>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 29.3 bits (64), Expect = 8.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 97 PITYTINRNQYPGRLNSTVR 156 PI Y +N+NQYPG S VR Sbjct: 436 PIWYDVNKNQYPGISESDVR 455 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,915,585 Number of Sequences: 219361 Number of extensions: 1814195 Number of successful extensions: 5196 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5173 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)