ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 250 4e-63
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
3dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
4dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
5dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 250 4e-63
6ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 244 3e-61
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 244 3e-61
8dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 244 3e-61
9dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 3e-61
10dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 2e-59
11emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 236 7e-59
12gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 200 4e-48
13gb|AF192975.1|AF192975 Oryza sativa unknown gene 190 4e-45
14gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Canc... 42 2.0
15gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 42 2.0
16gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 7.9
17gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.9
18gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.9
19gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete... 40 7.9
20emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 7.9

>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score =  250 bits (126), Expect = 4e-63
 Identities = 237/274 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 367
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231

                                                                        
Query: 368  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 427
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171

                                                                        
Query: 428  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 487
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1170 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1111

                                                                        
Query: 488  cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 547
            |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 1110 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1051

                                              
Query: 548  ggctaccatctttgcaggtaggggctgtggacgg 581
            |||||||||||||||||| |||||||| ||||||
Sbjct: 1050 ggctaccatctttgcaggcaggggctggggacgg 1017



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  250 bits (126), Expect = 4e-63
 Identities = 237/274 (86%)
 Strand = Plus / Plus

                                                                           
Query: 308     gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 367
               |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963

                                                                           
Query: 368     gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 427
                |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023

                                                                           
Query: 428     cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 487
               ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 3216024 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 3216083

                                                                           
Query: 488     cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 547
               |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 3216084 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 3216143

                                                 
Query: 548     ggctaccatctttgcaggtaggggctgtggacgg 581
               |||||||||||||||||| |||||||| ||||||
Sbjct: 3216144 ggctaccatctttgcaggcaggggctggggacgg 3216177



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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score =  250 bits (126), Expect = 4e-63
 Identities = 237/274 (86%)
 Strand = Plus / Plus

                                                                          
Query: 308    gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 367
              |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953

                                                                          
Query: 368    gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 427
               |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013

                                                                          
Query: 428    cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 487
              ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 131014 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 131073

                                                                          
Query: 488    cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 547
              |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 131074 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 131133

                                                
Query: 548    ggctaccatctttgcaggtaggggctgtggacgg 581
              |||||||||||||||||| |||||||| ||||||
Sbjct: 131134 ggctaccatctttgcaggcaggggctggggacgg 131167



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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score =  250 bits (126), Expect = 4e-63
 Identities = 237/274 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 367
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230

                                                                        
Query: 368  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 427
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170

                                                                        
Query: 428  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 487
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1169 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1110

                                                                        
Query: 488  cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 547
            |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 1109 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1050

                                              
Query: 548  ggctaccatctttgcaggtaggggctgtggacgg 581
            |||||||||||||||||| |||||||| ||||||
Sbjct: 1049 ggctaccatctttgcaggcaggggctggggacgg 1016



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  250 bits (126), Expect = 4e-63
 Identities = 237/274 (86%)
 Strand = Plus / Plus

                                                                         
Query: 308   gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 367
             |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656

                                                                         
Query: 368   gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 427
              |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716

                                                                         
Query: 428   cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 487
             ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 25717 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 25776

                                                                         
Query: 488   cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 547
             |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 25777 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 25836

                                               
Query: 548   ggctaccatctttgcaggtaggggctgtggacgg 581
             |||||||||||||||||| |||||||| ||||||
Sbjct: 25837 ggctaccatctttgcaggcaggggctggggacgg 25870



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>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score =  244 bits (123), Expect = 3e-61
 Identities = 234/271 (86%)
 Strand = Plus / Minus

                                                                       
Query: 311 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898

                                                                       
Query: 371 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838

                                                                       
Query: 431 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 837 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 778

                                                                       
Query: 491 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
           ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 777 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 718

                                          
Query: 551 taccatctttgcaggtaggggctgtggacgg 581
           ||||||||||||||| || ||||| ||||||
Sbjct: 717 taccatctttgcaggcagaggctggggacgg 687



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999

                        
Query: 267  tctggatacatg 278
            | ||||||||||
Sbjct: 998  tttggatacatg 987



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  244 bits (123), Expect = 3e-61
 Identities = 234/271 (86%)
 Strand = Plus / Plus

                                                                          
Query: 311    ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
              ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431

                                                                          
Query: 371    gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
               ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491

                                                                          
Query: 431    catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
              |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 876492 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 876551

                                                                          
Query: 491    ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
              ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 876552 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 876611

                                             
Query: 551    taccatctttgcaggtaggggctgtggacgg 581
              ||||||||||||||| || ||||| ||||||
Sbjct: 876612 taccatctttgcaggcagaggctggggacgg 876642



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 207    atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
              ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330

                          
Query: 267    tctggatacatg 278
              | ||||||||||
Sbjct: 876331 tttggatacatg 876342



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     cttattccacttgtctcaccc 83
              |||||||||||||||||||||
Sbjct: 876066 cttattccacttgtctcaccc 876086



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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  244 bits (123), Expect = 3e-61
 Identities = 234/271 (86%)
 Strand = Plus / Plus

                                                                         
Query: 311   ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
             ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326

                                                                         
Query: 371   gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
              ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386

                                                                         
Query: 431   catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
             |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 57387 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 57446

                                                                         
Query: 491   ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
             ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 57447 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 57506

                                            
Query: 551   taccatctttgcaggtaggggctgtggacgg 581
             ||||||||||||||| || ||||| ||||||
Sbjct: 57507 taccatctttgcaggcagaggctggggacgg 57537



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 207   atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
             ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225

                         
Query: 267   tctggatacatg 278
             | ||||||||||
Sbjct: 57226 tttggatacatg 57237



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cttattccacttgtctcaccc 83
             |||||||||||||||||||||
Sbjct: 56961 cttattccacttgtctcaccc 56981



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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score =  244 bits (123), Expect = 3e-61
 Identities = 234/271 (86%)
 Strand = Plus / Minus

                                                                       
Query: 311 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634

                                                                       
Query: 371 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574

                                                                       
Query: 431 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 573 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 514

                                                                       
Query: 491 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
           ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 513 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 454

                                          
Query: 551 taccatctttgcaggtaggggctgtggacgg 581
           ||||||||||||||| || ||||| ||||||
Sbjct: 453 taccatctttgcaggcagaggctggggacgg 423



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 207 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735

                       
Query: 267 tctggatacatg 278
           | ||||||||||
Sbjct: 734 tttggatacatg 723



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 63  cttattccacttgtctcaccc 83
           |||||||||||||||||||||
Sbjct: 999 cttattccacttgtctcaccc 979



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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score =  238 bits (120), Expect = 2e-59
 Identities = 228/264 (86%)
 Strand = Plus / Minus

                                                                        
Query: 311  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012

                                                                        
Query: 371  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952

                                                                        
Query: 431  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 2951 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 2892

                                                                        
Query: 491  ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
            ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 2891 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 2832

                                    
Query: 551  taccatctttgcaggtaggggctg 574
            ||||||||||||||| || |||||
Sbjct: 2831 taccatctttgcaggcagaggctg 2808



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 207  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113

                        
Query: 267  tctggatacatg 278
            | ||||||||||
Sbjct: 3112 tttggatacatg 3101



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   cttattccacttgtctcaccc 83
            |||||||||||||||||||||
Sbjct: 3377 cttattccacttgtctcaccc 3357



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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score =  236 bits (119), Expect = 7e-59
 Identities = 233/271 (85%)
 Strand = Plus / Plus

                                                                        
Query: 311  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519

                                                                        
Query: 371  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579

                                                                        
Query: 431  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 8580 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 8639

                                                                        
Query: 491  ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 550
            ||||||||||||||||||||| ||||||| |||||||||||| || ||||  || |||||
Sbjct: 8640 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccaagcaacgcaatggc 8699

                                           
Query: 551  taccatctttgcaggtaggggctgtggacgg 581
            ||||||||||||||| || ||||| ||||||
Sbjct: 8700 taccatctttgcaggcagaggctggggacgg 8730



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 207  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 266
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418

                        
Query: 267  tctggatacatg 278
            | ||||||||||
Sbjct: 8419 tttggatacatg 8430



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 63   cttattccacttgtctcaccc 83
            |||||||||||||||||||||
Sbjct: 8154 cttattccacttgtctcaccc 8174



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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score =  200 bits (101), Expect = 4e-48
 Identities = 227/269 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 368
            |||||||||||  || || | |||||||||||||| ||||| ||||| || || || || 
Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969

                                                                        
Query: 369  aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 428
            |  ||||||||||||||||||||  ||||||| || ||||||||    || |||||||||
Sbjct: 968  acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909

                                                                        
Query: 429  agcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttc 488
            ||||| || ||||||||||| ||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 908  agcattgcaatgaacggaacagcggcatggacagctgcaaaccactgaggagagaacttc 849

                                                                        
Query: 489  ttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatg 548
            ||||||||||| ||||||||||| ||||||| |||||| |||||||| || | ||| |||
Sbjct: 848  ttggtgtgctcccgccacaccccaagagggatgtttgccgccatccccagtagtgcaatg 789

                                         
Query: 549  gctaccatctttgcaggtaggggctgtgg 577
            |||||||||||||  || |||||||||||
Sbjct: 788  gctaccatctttgagggcaggggctgtgg 760



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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score =  190 bits (96), Expect = 4e-45
 Identities = 193/224 (86%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                       
Query: 311 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 370
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180

                                                                       
Query: 371 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 430
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120

                                                                       
Query: 431 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 490
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 119 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 60

                                                       
Query: 491 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcc 534
           ||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 59  ggtgtgctcacgccacaccccaagatgga-gtttgctgccatcc 17



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 207 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 253
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||
Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294



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>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167137

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    gagccaggtatcttcagcgca 218
              |||||||||||||||||||||
Sbjct: 138713 gagccaggtatcttcagcgca 138693



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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     ttcacagcaggacgtggtact 55
              |||||||||||||||||||||
Sbjct: 159317 ttcacagcaggacgtggtact 159337



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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      atgcatggactgacaacaca 23
              ||||||||||||||||||||
Sbjct: 115683 atgcatggactgacaacaca 115664



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     gtcggtgcaggagcgccggc 190
               ||||||||||||||||||||
Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    cagcatcgcgatgaacggaa 447
              ||||||||||||||||||||
Sbjct: 159362 cagcatcgcgatgaacggaa 159343



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>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence
          Length = 52591

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 281   ggtgactgtggcggcgggaccggcggtg 308
             |||| |||||||||||||| ||||||||
Sbjct: 30448 ggtggctgtggcggcgggagcggcggtg 30475



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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    cgaggatggaggctgctatg 386
              ||||||||||||||||||||
Sbjct: 162615 cgaggatggaggctgctatg 162596


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,514,825
Number of Sequences: 3902068
Number of extensions: 3514825
Number of successful extensions: 60337
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60196
Number of HSP's gapped (non-prelim): 138
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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