Clone Name | rbasd2d08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase) | 28 | 9.2 | 2 | CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-typ... | 28 | 9.2 |
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>MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase)| Length = 516 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 32 RNIITYYSGCCTSKNRGKSQ 91 RNII YYSGC + GK Q Sbjct: 419 RNIILYYSGCSNRSDLGKIQ 438
>CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-type lectin| superfamily member 13) (C-type lectin 13) (Kupffer cell receptor) Length = 550 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 267 HTSAMAILVHAIIYFALIALFVIVI 193 H A+ LV ++F+L+ALFV+V+ Sbjct: 42 HVQAIVALVVVTVFFSLLALFVVVL 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,748,714 Number of Sequences: 219361 Number of extensions: 317275 Number of successful extensions: 1195 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1192 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)