ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase) 28 9.2
2CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-typ... 28 9.2

>MATK_CHAGO (Q7YKY4) Maturase K (Intron maturase)|
          Length = 516

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 32  RNIITYYSGCCTSKNRGKSQ 91
           RNII YYSGC    + GK Q
Sbjct: 419 RNIILYYSGCSNRSDLGKIQ 438



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>CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-type lectin|
           superfamily member 13) (C-type lectin 13) (Kupffer cell
           receptor)
          Length = 550

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 267 HTSAMAILVHAIIYFALIALFVIVI 193
           H  A+  LV   ++F+L+ALFV+V+
Sbjct: 42  HVQAIVALVVVTVFFSLLALFVVVL 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,748,714
Number of Sequences: 219361
Number of extensions: 317275
Number of successful extensions: 1195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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