Clone Information

BLAST Search Result

Clone Name	rbasd1o06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS4_PRUAR (O81363) 40S ribosomal protein S4	106	2e-23
2	RS4_SOLTU (P46300) 40S ribosomal protein S4	105	3e-23
3	RS4_ARATH (P49204) 40S ribosomal protein S4	104	6e-23
4	RS4_MAIZE (O22424) 40S ribosomal protein S4	103	1e-22
5	RS4_GOSHI (P46299) 40S ribosomal protein S4	102	2e-22
6	RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)	89	3e-22
7	RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1	86	3e-17
8	RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform	86	3e-17
9	RS4_XENTR (Q6PBC4) 40S ribosomal protein S4	84	6e-17
10	RS4_XENLA (P49401) 40S ribosomal protein S4	84	6e-17
11	RS4_CRIGR (P47961) 40S ribosomal protein S4	84	6e-17
12	RS4_CHICK (P47836) 40S ribosomal protein S4	84	6e-17
13	RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform	84	6e-17
14	RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform	84	6e-17
15	RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform	84	6e-17
16	RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform	84	6e-17
17	RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ...	84	6e-17
18	RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform	84	6e-17
19	RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform	84	6e-17
20	RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform	83	1e-16
21	RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1	82	3e-16
22	RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1	82	4e-16
23	RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1	82	4e-16
24	RS4_DROME (P41042) 40S ribosomal protein S4	82	4e-16
25	RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1	81	5e-16
26	RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1	80	2e-15
27	RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1	80	2e-15
28	RS4_ICTPU (Q90YS0) 40S ribosomal protein S4	79	2e-15
29	RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2	79	3e-15
30	RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2	78	5e-15
31	RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B	70	9e-13
32	RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C	70	2e-12
33	RS4A_SCHPO (P87158) 40S ribosomal protein S4-A	70	2e-12
34	RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)	70	2e-12
35	RS4_DICDI (P51405) 40S ribosomal protein S4	67	1e-11
36	RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)	65	3e-11
37	RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)	65	5e-11
38	RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4	62	3e-10
39	Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977	30	1.8
40	FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (...	29	2.4
41	DCBD2_HUMAN (Q96PD2) Discoidin, CUB and LCCL domain-containing p...	28	5.4
42	BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa...	28	5.4
43	SOX13_MOUSE (Q04891) SOX-13 protein	28	7.0
44	DCBD2_RAT (Q91ZV2) Discoidin, CUB and LCCL domain-containing pro...	28	7.0
45	DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing p...	28	7.0
46	YCGV_ECO57 (Q8X583) Hypothetical protein ycgV	28	7.0
47	COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemph...	28	7.0
48	KYNU_CAEEL (Q18026) Probable kynureninase (EC 3.7.1.3) (L-kynure...	27	9.2

>RS4_PRUAR (O81363) 40S ribosomal protein S4|
          Length = 261

 Score =  106 bits (264), Expect = 2e-23
 Identities = 49/57 (85%), Positives = 52/57 (91%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           IKNREKHKG F TIHV+ A GH+FAT LGNVFTIGKGTKPWVSLPKGKGIKLTI+EE
Sbjct: 191 IKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEE 247

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>RS4_SOLTU (P46300) 40S ribosomal protein S4|
          Length = 264

 Score =  105 bits (261), Expect = 3e-23
 Identities = 46/57 (80%), Positives = 53/57 (92%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           IKNREKHKG F T+H++ +QGH+FAT LGNVFT+GKGTKPWVSLPKGKGIKLTIIE+
Sbjct: 195 IKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIED 251

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>RS4_ARATH (P49204) 40S ribosomal protein S4|
          Length = 262

 Score =  104 bits (259), Expect = 6e-23
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           IKNREKHKG F TIH++ + GH+FAT LGNV+TIGKGTKPWVSLPKGKGIKLTIIEE
Sbjct: 195 IKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEE 251

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>RS4_MAIZE (O22424) 40S ribosomal protein S4|
          Length = 265

 Score =  103 bits (257), Expect = 1e-22
 Identities = 48/57 (84%), Positives = 51/57 (89%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           IKNREKHKG F TIHVE + GHQFAT +GNVFTIGKG KPWVSLPKGKGIKL+IIEE
Sbjct: 195 IKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEE 251

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>RS4_GOSHI (P46299) 40S ribosomal protein S4|
          Length = 262

 Score =  102 bits (254), Expect = 2e-22
 Identities = 48/57 (84%), Positives = 51/57 (89%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           IKNREKHKG F TIHV+ A GH+FAT LGNVFTIGKGTKPWVSLPK KGIKL+IIEE
Sbjct: 195 IKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEE 251

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>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)|
          Length = 268

 Score = 89.0 bits (219), Expect(2) = 3e-22
 Identities = 42/49 (85%), Positives = 43/49 (87%)
 Frame = -1

Query: 314 KGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIE 168
           KG F TIHVE A GHQFAT LGNVFTIGKG KPWVSLPKGKGIKL+IIE
Sbjct: 205 KGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253



 Score = 33.9 bits (76), Expect(2) = 3e-22
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 375 HGDWWAQHWACWCDQEQGEA*G 310
           HGDW  ++ A WCDQ+QGEA G
Sbjct: 186 HGDW-RRNTAVWCDQQQGEAKG 206

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>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 37/57 (64%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NREKH G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 37/57 (64%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NREKH G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4_XENLA (P49401) 40S ribosomal protein S4|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4_CRIGR (P47961) 40S ribosomal protein S4|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4_CHICK (P47836) 40S ribosomal protein S4|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant|
           mRNA protein) (SCR10)
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IGKG KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEE 250

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>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 36/57 (63%), Positives = 44/57 (77%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NREKH G F  +HV+ + G+ FAT L N+F IGKG KPWVSLP+GKG++LTI EE
Sbjct: 194 ITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEE 250

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>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IG G KPW+SLP+GKGI+LT+ EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEE 250

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>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT + N+F IG G KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 250

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>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT + N+F IG G KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 250

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>RS4_DROME (P41042) 40S ribosomal protein S4|
          Length = 261

 Score = 81.6 bits (200), Expect = 4e-16
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           + NRE+H G F  +H++ +QGH FAT L NVF IGKG KP++SLPKGKG+KL+I EE
Sbjct: 195 VVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEE 251

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>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT + N+F IG G KPW+SLP+GKGI+LT+ EE
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEE 250

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>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IG G KPW+SLP+GKGI+LT+  E
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAE 250

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>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ A G+ FAT L N+F IG G KPW+SLP+GKGI+LT+  E
Sbjct: 194 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAE 250

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>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4|
          Length = 262

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G F  +HV+ + G+ FAT L N+F IGKG K WVS+P+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEE 250

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>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I NRE+H G    +HV+ A G+ FAT + N+F IG G KPW+SLP+GKGI+LTI EE
Sbjct: 194 ITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 250

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>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           + NRE+H G    +HV+ A G+ FAT + N+F IG G KPW+SLP+GKGI+LTI EE
Sbjct: 194 VTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 250

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>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B|
          Length = 262

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 33/57 (57%), Positives = 40/57 (70%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I +RE H G F  IHV+ A   +FAT L NVF IG+  K W+SLPKGKG+KL+I EE
Sbjct: 195 IVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEE 251

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>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C|
          Length = 262

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 33/57 (57%), Positives = 40/57 (70%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I +RE H G F  IHV+ A   +FAT L NVF IG+  K W+SLPKGKG+KL+I EE
Sbjct: 195 IVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEE 251

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>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A|
          Length = 262

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 33/57 (57%), Positives = 40/57 (70%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I +RE H G F  IHV+ A   +FAT L NVF IG+  K W+SLPKGKG+KL+I EE
Sbjct: 195 IVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEE 251

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>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)|
          Length = 260

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I +RE+H+G F  +H++ A  +QF T L NVF IG+G K  +SLPKGKGIKL+I EE
Sbjct: 195 ITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEE 251

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>RS4_DICDI (P51405) 40S ribosomal protein S4|
          Length = 266

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           + +REKH G F  +HV    GHQFAT L NVF IGK ++ +VSLP GKG++ + ++E
Sbjct: 194 VTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 250

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>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)|
          Length = 260

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 29/57 (50%), Positives = 41/57 (71%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I ++E+H G F  +H++ +  + F T L NVF IG+  KP++SLPKGKGIKL+I EE
Sbjct: 194 IVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEE 250

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>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)|
          Length = 262

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIG-KGTKPWVSLPKGKGIKLTIIEE 165
           I +REK +G F  +H++ A  + F T L NVF IG +  KPWVSLPKGKGIKL+I EE
Sbjct: 195 IVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEE 252

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>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4|
          Length = 259

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 30/57 (52%), Positives = 38/57 (66%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPWVSLPKGKGIKLTIIEE 165
           I +RE+  G    IH++ + GH FAT + NVF IGKG K  VSLP G GI+L+I EE
Sbjct: 194 IGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEE 250

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>Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977|
          Length = 199

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +3

Query: 234 NGEH------VAQTGGKLVTLGXLNVDGLKGSLMLL 323
           NG H      V + GGKL  +G L  D LKGSL +L
Sbjct: 36  NGSHNPGATNVLRNGGKLAAIGVLLFDTLKGSLPVL 71

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>FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin|
           resistance protein)
          Length = 154

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 335 IKNREKHKGXFXTIHVEXAQGHQFATXLGNVF---TIGKGTKPWVSLPKG 195
           +K R++H+G   +I+     GH+F    G+VF      +  KP +S  +G
Sbjct: 95  LKGRKRHEGDRDSIYFSDPDGHKFELHTGSVFDRLQYYQNEKPHLSFHEG 144

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>DCBD2_HUMAN (Q96PD2) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein) (CUB, LCCL and coagulation
           factor V/VIII-homology domains protein 1)
          Length = 775

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  VICKDIXLCFLEPYFFKFCPDVC 19
           + C D    FLEP F K+CP  C
Sbjct: 193 ITCLDTASNFLEPEFSKYCPAGC 215

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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 291 VDGLKGSLMLLPVLDHTNTPSVAPTS 368
           V GL G L++ PVL    TP +AP S
Sbjct: 535 VSGLVGQLLMQPVLVAQGTPGMAPAS 560

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>SOX13_MOUSE (Q04891) SOX-13 protein|
          Length = 985

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 297 GLKGSLMLLPVLDHTNTPSVAPTSHH 374
           G+ GS+  LP+    ++ SV P SHH
Sbjct: 843 GVSGSVYFLPMYTSPSSSSVCPCSHH 868

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>DCBD2_RAT (Q91ZV2) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein)
          Length = 769

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  VICKDIXLCFLEPYFFKFCPDVC 19
           + C D    FLEP F K+CP  C
Sbjct: 190 ITCLDTVSNFLEPEFSKYCPAGC 212

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>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein)
          Length = 769

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 87  VICKDIXLCFLEPYFFKFCPDVC 19
           + C D    FLEP F K+CP  C
Sbjct: 190 ITCLDTVSNFLEPEFSKYCPAGC 212

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>YCGV_ECO57 (Q8X583) Hypothetical protein ycgV|
          Length = 547

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 311 GXFXTIHVEXAQGHQFATXLGNVFTIGKGTKPW 213
           G F T++VE   G+       +V   G G KPW
Sbjct: 514 GTFTTLNVENLSGNSTFIMRADVVGEGNGVKPW 546

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>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 709

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 197 PWGGSPKAWCPC 232
           PWG +P AWCPC
Sbjct: 449 PWGAAP-AWCPC 459

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>KYNU_CAEEL (Q18026) Probable kynureninase (EC 3.7.1.3) (L-kynurenine|
           hydrolase)
          Length = 478

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 375 HGDWWAQHWACWCDQEQG 322
           H  WW   +ACWC  + G
Sbjct: 274 HLHWWDVDFACWCSYKYG 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,244,138
Number of Sequences: 219361
Number of extensions: 889444
Number of successful extensions: 2015
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result