ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2d02 |
|---|---|
| Clone Library Name | barley_pub |
>AMOT_HUMAN (Q4VCS5) Angiomotin| Length = 1084 Score = 31.6 bits (70), Expect = 2.3 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 5/143 (3%) Frame = -2 Query: 602 PQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSPQWFAAVHAAVPFIAMLRKSVNMPRTA 423 P P+ A A A+ AA + T + A AA P A TA Sbjct: 884 PAPVAAAATAAAITATAATIT-------TTMVAAAPVAVAAAAAPAAAAAPSPATAAATA 936 Query: 422 MVFTIAASILGQ-----TIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGK 258 + AA+ GQ ++ S A AA PAA V P + A + Sbjct: 937 AAVSPAAA--GQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQ 994 Query: 257 AWDPLALKIPGSANAGAPAPTPS 189 A P + P SA A AP P P+ Sbjct: 995 ASAPAQTQAPTSAPAVAPTPAPT 1017
>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) (RecQ4) (RTS) Length = 1208 Score = 30.8 bits (68), Expect = 3.9 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = -2 Query: 668 PACNCCCTSKPSHAQTLVKSLRPQPLPAKMVAIAMLGMAANVPLGVWREHTK 513 PAC C CT PS + V RP P A + AA P V H + Sbjct: 851 PACTCTCTRPPSEQEGAVGGERPVPKYPPQEAEQLSHQAAPGPRRVCMGHER 902
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.8 bits (68), Expect = 3.9 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Frame = -2 Query: 278 CSDAEGKAWD----PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLP 111 CS A +W P + P + AP PS+ + P + C AC P Sbjct: 9 CSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSL----VCTPVSCVSSPCCQAACEP 64 Query: 110 LGETSGIRCYSTTSCCE--TCRG--CVVSPC 30 SG T SCC+ +C+ C SPC Sbjct: 65 SACQSGCTSSCTPSCCQQSSCQPACCTSSPC 95
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -2 Query: 212 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRGCVVSP 33 GAP P ++ PG+ ++L + L LPL + C+ +CC+ C + P Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKAC--LALLP 747 Query: 32 CICN 21 C CN Sbjct: 748 C-CN 750
>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan| transmembrane protein L6H) Length = 197 Score = 30.4 bits (67), Expect = 5.1 Identities = 18/71 (25%), Positives = 29/71 (40%) Frame = +1 Query: 388 CPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTAANHWGENFLVCSRHTPRGTFAAIPSI 567 C R + T+ ++ ++ + L + NG +WT NH + G P I Sbjct: 6 CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65 Query: 568 AMATIFAGRGC 600 A A G+GC Sbjct: 66 A-AVRAGGKGC 75
>ZN533_BRARE (Q6PBT9) Zinc finger protein 533| Length = 492 Score = 30.4 bits (67), Expect = 5.1 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 353 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 198 KT+ + T T T + SCSD K+ +PLA K+P S A PAP Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 290 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 189 +SG DA G + PL P A A APAP P+ Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310
>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1338 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 361 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 489 ++S LDP V R+ A T V ++TD + +G W A Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772
>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) Length = 809 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = -2 Query: 668 PACNCCCTSKPSHAQTLVKSLRPQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSP 501 P C CCC + S + V++L P P + A L ++ L R+ + F P Sbjct: 726 PCCGCCCGDRSSPPVSPVRALDPPPGGVPLEAGLSLASLGSLGLSEERKPSLFFQP 781
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 30.0 bits (66), Expect = 6.7 Identities = 30/129 (23%), Positives = 46/129 (35%) Frame = -2 Query: 434 PRTAMVFTIAASILGQTIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGKA 255 P A +AA + G +G A + G++ + +G+ S A + Sbjct: 12 PTAAAAAAVAAGV-GGGVGGGASGVATANTNTTGSSSTGGS------SSAGTTSSANTSS 64 Query: 254 WDPLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYST 75 +L G +AG A S+ P Y+ L C G + C S Sbjct: 65 SSSSSLSSAGGGDAGMSADLTSL------FECPVCFDYVLPPILQCSS-GHLVCVSCRSK 117 Query: 74 TSCCETCRG 48 +CC TCRG Sbjct: 118 LTCCPTCRG 126
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 29.6 bits (65), Expect = 8.7 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Frame = -2 Query: 344 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 168 A G G A T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 167 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 48 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 29.6 bits (65), Expect = 8.7 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Frame = -2 Query: 344 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 168 A G G A T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 167 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 48 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)| Length = 213 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Frame = -2 Query: 227 GSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCYSTTSCCE 60 GS + G P ++C W G++F C AC P G+ +G R + CC Sbjct: 117 GSQSGGKLCPN-NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS 175 Query: 59 TCRGCVVSPCIC 24 C + P C Sbjct: 176 KWGSCGIGPGYC 187
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 668 PACNCCCTSKPSHAQTLVKSLRPQPLPAKMVAIAMLGMAANVPLGV 531 P C CCC + S T +++ P P P + A L A+ P G+ Sbjct: 742 PCCGCCCGDRSSPPTTPLRA--PDPSPGGVPLEASLCPASLAPSGI 785 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,414,689 Number of Sequences: 219361 Number of extensions: 2131277 Number of successful extensions: 6528 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6087 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6500 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
