>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b|
          Length = 217

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 38/63 (60%), Positives = 46/63 (73%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEK 447
           WHA DF+DGELKDE+F IRF +VENCK F     E+AES  ++E  ES + S  AGLLEK
Sbjct: 123 WHARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAES--EEEKEESKDASDTAGLLEK 180

Query: 446 LSV 438
           L+V
Sbjct: 181 LTV 183

>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein|
           siRanBP)
          Length = 228

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 37/63 (58%), Positives = 46/63 (73%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEK 447
           WHA DFADGELKDE+F IRF ++ENCK F     E+AES  ++E  ES + +  AGLLEK
Sbjct: 121 WHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAES--EEEKEESKDAADTAGLLEK 178

Query: 446 LSV 438
           L+V
Sbjct: 179 LTV 181

>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c|
          Length = 219

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 37/63 (58%), Positives = 45/63 (71%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEK 447
           WHA DF+DGELKDE+F IRF ++ENCK F +   EIAES  +    ES +G  AAGL+E 
Sbjct: 120 WHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAES--QQVGKESTQGDEAAGLIEN 177

Query: 446 LSV 438
           LSV
Sbjct: 178 LSV 180

>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein|
            Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
            (Fragment)
          Length = 1085

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGE 486
            W A+D+ADGE K E  A+RF T E    FK   +E  ++L K + G+
Sbjct: 866  WTASDYADGEAKVEQLAVRFKTKEMADCFKKKFEECQQNLLKPQKGQ 912



 Score = 38.1 bits (87), Expect = 0.021
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
           W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 269 WTACDFADGERKIEHLAVRFKLQDVADSFKKIFDEAKVAQEKD 311

>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 483
            W A+D+ADGE K E  A+RF T E  + FK   ++  +++ K ++G +
Sbjct: 2834 WTASDYADGEAKVEQLAVRFKTKEMTESFKKKFEDSQQNIIKLQNGHT 2881



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
            W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 2241 WTACDFADGERKIEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2283



 Score = 34.3 bits (77), Expect = 0.31
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 501
            WHA D+AD   K E  AIRF T E    FK   +E A+++ K
Sbjct: 1260 WHALDYADELPKPEQLAIRFKTPEEAALFKCKFEE-AQNILK 1300



 Score = 33.9 bits (76), Expect = 0.40
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
            W A+DF+DG+ K E  A +F T E  ++FK   +E
Sbjct: 1944 WLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 1978

>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein|
            Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
          Length = 3224

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDG 489
            W A+D+ADGE K E  A+RF T E    FK   +E  ++L K + G
Sbjct: 3005 WTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKG 3050



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
            W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 2404 WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2446



 Score = 35.4 bits (80), Expect = 0.14
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 501
            WHA D+AD   K E  AIRF T E    FK   +E A+S+ K
Sbjct: 1266 WHALDYADELPKPEQLAIRFKTPEEAALFKCKFEE-AQSILK 1306



 Score = 33.9 bits (76), Expect = 0.40
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
            W A+DF+DG+ K E  A +F T E  ++FK   +E
Sbjct: 2107 WLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 2141

>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding|
           protein 1) (RANBP1) (HpaII tiny fragments locus 9a
           protein)
          Length = 203

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 617 ADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDE---DGESVEGSSAAGLLEK 447
           ADFAD   K E+ AIRF   EN +KFK   +E  + + + E    G++      A  LE 
Sbjct: 126 ADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEA 185

Query: 446 LSV 438
           LSV
Sbjct: 186 LSV 188

>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)|
          Length = 1748

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
            W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 1413 WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1455



 Score = 33.1 bits (74), Expect = 0.69
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
            W A+DF+DG+ K E  A +F T E  ++FK   +E
Sbjct: 1116 WLASDFSDGDAKLERLAAQFKTPELAEEFKQKFEE 1150

>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8|
            (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane
            protein BS-63)
          Length = 1765

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
            W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 1428 WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
            W A+ F+DG+ K E  A +F T E  ++FK   +E
Sbjct: 1131 WSASHFSDGDAKLERLAAKFKTPELAEEFKQKFEE 1165

>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)|
          Length = 1765

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
            W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 1428 WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470



 Score = 34.3 bits (77), Expect = 0.31
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 626  WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
            W A+DF+DG+ K E  A +F T E  ++FK   +E
Sbjct: 1131 WSASDFSDGDAKLERLAAKFKTPELAEEFKQKFEE 1165

>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)|
          Length = 755

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 498
           W A DFADGE K E  A+RF   +    FK + DE   +  KD
Sbjct: 418 WTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 460



 Score = 34.3 bits (77), Expect = 0.31
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 626 WHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 522
           W A+DF+DG+ K E  A +F T E  ++FK   +E
Sbjct: 121 WSASDFSDGDAKLERLAAKFKTPELAEEFKQKFEE 155

>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding|
           protein 1) (RanBP1)
          Length = 201

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 617 ADFADGELKDEMFAIRFGTVENCKKFKDLVD----EIAESLAKDEDGESVEGSSAAGLLE 450
           ADFAD   K E+ AIRF   EN +KFK   +    EI E   K   G++      A  LE
Sbjct: 126 ADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLE 185

Query: 449 KLSV 438
            LSV
Sbjct: 186 ALSV 189

>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding|
           protein 1) (RANBP1) (Perinuclear array-localized
           protein)
          Length = 201

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 617 ADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAE 513
           AD A+GE +   FAIRFG+ EN  KFK+  ++  E
Sbjct: 162 ADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQE 196

>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding|
           protein 1) (RANBP1) (Spi1-binding protein)
          Length = 215

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 620 AADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 501
           AAD ++GE   E FAIRF   EN   FK+  ++  E  AK
Sbjct: 171 AADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAK 210

>BGB_DROME (Q24040) Protein big brother|
          Length = 213

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 167 HLSIYCYM*NICSQYRGWL----LDGVVLLLSRTRNVVHE 60
           H+  Y  M  +C ++RGW+    LDGV  L    R  +HE
Sbjct: 120 HIKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHE 159

>RIMM_LACJO (Q74IQ5) Probable 16S rRNA-processing protein rimM|
          Length = 173

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 53  LNTHGLHFEFSTKARQHHPKANLDTASRYFTYNNK 157
           L+ HGL  E    A    P+  L T SR F  NNK
Sbjct: 11  LSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNK 45

>DFRA_SYNY3 (P73212) Putative dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 343

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -3

Query: 417 KRSKGGIIQGDRNQSRDNPLRVVGRAAHIRTVLLSFCSVARVSLWVLPVDGSW*SLPMTY 238
           +R K  + +GDR       + + G  AH+ T+         V LW          LP+T+
Sbjct: 227 QRGKTALTRGDRYILGHENISLQGILAHLSTITGLPAPKNTVPLW----------LPLTF 276

Query: 237 AENFETVRRCLEQSPSSPPLGV 172
           A   E V   L +SPS P  GV
Sbjct: 277 AWVEEKVLAPLGRSPSVPMDGV 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,698,274
Number of Sequences: 219361
Number of extensions: 1492314
Number of successful extensions: 4280
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4276
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)