ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1n18 |
|---|---|
| Clone Library Name | barley_pub |
>RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 80 Score = 144 bits (363), Expect = 1e-34 Identities = 69/79 (87%), Positives = 76/79 (96%) Frame = -1 Query: 423 MSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMV 244 MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNG++KTDIGMV Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60 Query: 243 VLRGNSVVMIEALEPIARS 187 V+RGNS+V +EALEP+ RS Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 81 Score = 130 bits (327), Expect = 2e-30 Identities = 62/76 (81%), Positives = 70/76 (92%) Frame = -1 Query: 423 MSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMV 244 MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNG+EK DIGMV Sbjct: 1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60 Query: 243 VLRGNSVVMIEALEPI 196 V+RGNSVV +EALEP+ Sbjct: 61 VIRGNSVVTVEALEPV 76
>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 76 Score = 90.9 bits (224), Expect = 2e-18 Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 1/71 (1%) Frame = -1 Query: 405 PPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDE-KTDIGMVVLRGN 229 PP++KKYMDK++ +KLN R V G LRGFD FMN+V+D+TVE D K +IGMVV+RGN Sbjct: 6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65 Query: 228 SVVMIEALEPI 196 S+VM+EAL+ + Sbjct: 66 SIVMVEALDRV 76
>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 89.7 bits (221), Expect = 4e-18 Identities = 43/71 (60%), Positives = 56/71 (78%), Gaps = 1/71 (1%) Frame = -1 Query: 405 PPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIGMVVLRGN 229 PP+LKK+MDKKL +KLN R V G LRGFD FMNLV+D VE+ ++ +IGMVV+RGN Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65 Query: 228 SVVMIEALEPI 196 S++M+EALE + Sbjct: 66 SIIMLEALERV 76
>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 89.7 bits (221), Expect = 4e-18 Identities = 43/71 (60%), Positives = 56/71 (78%), Gaps = 1/71 (1%) Frame = -1 Query: 405 PPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIGMVVLRGN 229 PP+LKK+MDKKL +KLN R V G LRGFD FMNLV+D VE+ ++ +IGMVV+RGN Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65 Query: 228 SVVMIEALEPI 196 S++M+EALE + Sbjct: 66 SIIMLEALERV 76
>RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 77 Score = 83.6 bits (205), Expect = 3e-16 Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 1/72 (1%) Frame = -1 Query: 405 PPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGD-EKTDIGMVVLRGN 229 PP+LKKYMDK++ +KLN NR V G LRGFD FMN+V+D VE D ++GM V+RGN Sbjct: 6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGN 65 Query: 228 SVVMIEALEPIA 193 SVV++E E I+ Sbjct: 66 SVVIMEPKERIS 77
>RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 77 Score = 77.8 bits (190), Expect = 2e-14 Identities = 38/75 (50%), Positives = 58/75 (77%), Gaps = 1/75 (1%) Frame = -1 Query: 423 MSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGD-EKTDIGM 247 MS++G P DLKKY+D+++ ++LN +R V G LRG+D F+N+V+++++E D EK IG Sbjct: 1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGS 59 Query: 246 VVLRGNSVVMIEALE 202 V +RGNSV+MIE L+ Sbjct: 60 VAIRGNSVIMIETLD 74
>RUXG_YEAST (P40204) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 77 Score = 74.7 bits (182), Expect = 1e-13 Identities = 34/73 (46%), Positives = 56/73 (76%), Gaps = 4/73 (5%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTD---IGM-VVLR 235 P+LKKYMDKK+ + +N +R V G LRG+D F+N+V+D+ +E+NG++ + +G+ V+R Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIR 64 Query: 234 GNSVVMIEALEPI 196 GNS++ +EAL+ I Sbjct: 65 GNSIISLEALDAI 77
>LSM7_YEAST (P53905) U6 snRNA-associated Sm-like protein LSm3| Length = 107 Score = 59.7 bits (143), Expect = 4e-09 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 12/78 (15%) Frame = -1 Query: 399 DLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV--NGDEKTD---------- 256 DL KY D K+++KL ++VIG L+G+DQ MNLV+D+TVE N D++ + Sbjct: 21 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 80 Query: 255 IGMVVLRGNSVVMIEALE 202 +G+ V+RG +V + + E Sbjct: 81 LGLTVIRGTILVSLSSAE 98
>LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7| Length = 103 Score = 57.0 bits (136), Expect = 3e-08 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Frame = -1 Query: 399 DLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGD---------EKTDIGM 247 DL KY+DK +++K R G L+GFD +NLV+D T+E D + +G+ Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73 Query: 246 VVLRGNSVVMI 214 VV RG SVV+I Sbjct: 74 VVCRGTSVVLI 84
>LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7| Length = 103 Score = 56.2 bits (134), Expect = 5e-08 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Frame = -1 Query: 399 DLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGD---------EKTDIGM 247 DL KY+DK +++K R G L+GFD +NLV+D T+E D + +G+ Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73 Query: 246 VVLRGNSVVMI 214 VV RG SVV+I Sbjct: 74 VVCRGTSVVLI 84
>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/70 (30%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGDEKTDIGMVVLRG 232 L+ Y+++ + + + R+++GTL+GFDQ +NL++D + E G E+ +G+ ++RG Sbjct: 4 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 63 Query: 231 NSVVMIEALE 202 ++V +I ++ Sbjct: 64 DNVAVIGEID 73
>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/70 (30%), Positives = 46/70 (65%), Gaps = 5/70 (7%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGDEKTDIGMVVLRG 232 L+ Y+++ + + + R+++GTL+GFDQ +NL++D + E G E+ +G+ ++RG Sbjct: 4 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 63 Query: 231 NSVVMIEALE 202 ++V +I ++ Sbjct: 64 DNVAVIGEID 73
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 46.6 bits (109), Expect = 4e-05 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Frame = -1 Query: 447 PFVQSGATMSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE---- 280 PF SG+ L Y+D+K+ + L + +IG LR FDQF NL++ T+E Sbjct: 9 PFTTSGS----------LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYV 58 Query: 279 --VNGDEKTDIGMVVLRGNSVVMIEALE 202 + GD D G+ ++RG +VV++ L+ Sbjct: 59 DDMYGD--IDRGVYIVRGENVVLLGELD 84
>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8| Length = 94 Score = 45.4 bits (106), Expect = 9e-05 Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 5/66 (7%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE--VNGD---EKTDIGMVVLRG 232 L +M++++Q+ N RVV+G+L+GFD NL++ ++ E ++ D E +G+ +LRG Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62 Query: 231 NSVVMI 214 +V M+ Sbjct: 63 ENVAMV 68
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein| Length = 83 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNSVV 220 LK + + + I + NR G L G+D +MN+V+ N E +NG+ K V++RG++V+ Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVI 73 Query: 219 MI 214 + Sbjct: 74 FV 75
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein| Length = 83 Score = 43.9 bits (102), Expect = 3e-04 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNSVV 220 LK + + + I + NR G L G+D +MN+V+ N E +NG+ K +++RG++V+ Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVI 73 Query: 219 MI 214 + Sbjct: 74 FV 75
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N+ + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 8/69 (11%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE----VNGDEKTD----IGMVV 241 LK +D+++ IKL R ++GTL+ FD N+V+ + VE +N +E ++ MV Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVF 67 Query: 240 LRGNSVVMI 214 +RG++V +I Sbjct: 68 IRGDTVTLI 76
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N+ + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N+ + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Frame = -1 Query: 390 KYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV----NGDEKTDIGMVVLRGNSV 223 K + ++ I + +++ ++GTL GFD F+N+V+++ E G T + ++L GN++ Sbjct: 19 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 78 Query: 222 VMI 214 M+ Sbjct: 79 TML 81
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Frame = -1 Query: 390 KYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV----NGDEKTDIGMVVLRGNSV 223 K + ++ I + +++ ++GTL GFD F+N+V+++ E G T + ++L GN++ Sbjct: 19 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 78 Query: 222 VMI 214 M+ Sbjct: 79 TML 81
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 42.7 bits (99), Expect = 6e-04 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N+ + +E Sbjct: 4 GKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L RV IGT + FD+ MNL++ N+ + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)| Length = 172 Score = 42.4 bits (98), Expect = 7e-04 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%) Frame = -1 Query: 384 MDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTV------EVNGDEKTDIGMVVLRGNSV 223 +D+K+ + L R++ G LR FDQ+ NL++ + V E N + D G+ ++RG +V Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109 Query: 222 VMI 214 VM+ Sbjct: 110 VML 112
>LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1| Length = 133 Score = 42.4 bits (98), Expect = 7e-04 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Frame = -1 Query: 384 MDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE--VNGDEKTDI--GMVVLRGNSVVM 217 +DKK + L R +IG LR DQF NLV+ TVE G + DI G+ V+RG +VV+ Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73 Query: 216 IEALE 202 + ++ Sbjct: 74 LGEID 78
>LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Small nuclear| ribonuclear CaSm) (Cancer-associated Sm-like) Length = 133 Score = 42.4 bits (98), Expect = 7e-04 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Frame = -1 Query: 384 MDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE--VNGDEKTDI--GMVVLRGNSVVM 217 +DKK + L R +IG LR DQF NLV+ TVE G + DI G+ V+RG +VV+ Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73 Query: 216 IEALE 202 + ++ Sbjct: 74 LGEID 78
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 11/97 (11%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDE 265 G+ + +++D +++ L R+ IGT + FD+ MNL++ N + +E Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEPIARSQ*YFDLPASGS 154 K +G+V+LRG ++V + P + +P +G+ Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGA 100
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIGMVVLRGNSVV 220 L +D + ++L R G L+G+D MNLV+DN E+ +G+ + VV+RG++VV Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRGDNVV 68 Query: 219 MI 214 + Sbjct: 69 YV 70
>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein| Length = 77 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIGMVVLRGNSVV 220 L + + + ++L R GTL G+D MNLV+ + E+ NG+ +G VV+RG++VV Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVV 68 Query: 219 MI 214 + Sbjct: 69 FV 70
>LSM6_SCHPO (Q9UUI1) U6 snRNA-associated Sm-like protein LSm6| Length = 75 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNSVV 220 L K + KK+ I+L++ G L D +MNL ++ T E VNG + G +RGN+V+ Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68 Query: 219 MIEALE 202 + AL+ Sbjct: 69 YVSALD 74
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIGMVVLRGNSVV 220 L +D + ++L R G L+G+D MNLV+DN E+ G+ + VV+RG++VV Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVV 68 Query: 219 MI 214 + Sbjct: 69 YV 70
>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein| Length = 77 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/58 (29%), Positives = 36/58 (62%) Frame = -1 Query: 387 YMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVLRGNSVVMI 214 Y+D + +KL + + G L+ +DQ +N+++ + E+ +G+ ++RG+SVV+I Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIRRLGLTLVRGDSVVVI 73
>RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/68 (25%), Positives = 44/68 (64%), Gaps = 6/68 (8%) Frame = -1 Query: 390 KYMDKKLQIKL----NANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGN 229 +Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++L+G+ Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82 Query: 228 SVVMIEAL 205 ++ +++++ Sbjct: 83 NITLLQSV 90
>RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/68 (25%), Positives = 44/68 (64%), Gaps = 6/68 (8%) Frame = -1 Query: 390 KYMDKKLQIKL----NANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGN 229 +Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++L+G+ Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82 Query: 228 SVVMIEAL 205 ++ +++++ Sbjct: 83 NITLLQSV 90
>RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/68 (25%), Positives = 44/68 (64%), Gaps = 6/68 (8%) Frame = -1 Query: 390 KYMDKKLQIKL----NANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGN 229 +Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++L+G+ Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82 Query: 228 SVVMIEAL 205 ++ +++++ Sbjct: 83 NITLLQSV 90
>RUXE_DROME (Q9VLV5) Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm| protein E) (Sm-E) (SmE) Length = 94 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/70 (25%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Frame = -1 Query: 390 KYMDKKLQIKL----NANRVVIGTLRGFDQFMNLVVDNTVE--VNGDEKTDIGMVVLRGN 229 +Y+ + ++++ N + + G + GFD++MNLV+D+ E V ++ ++G ++L+G+ Sbjct: 22 RYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGD 81 Query: 228 SVVMIEALEP 199 ++ +I+ + P Sbjct: 82 NITLIQNVSP 91
>LSM6_MOUSE (P62313) U6 snRNA-associated Sm-like protein LSm6| Length = 80 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -1 Query: 417 RSGQPPD-LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMV 244 R P D LK+ + + + +KLN+ G L D +MN+ ++ T E VNG K G Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63 Query: 243 VLRGNSVVMI 214 +RGN+V+ I Sbjct: 64 FIRGNNVLYI 73
>LSM6_HUMAN (P62312) U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)| Length = 80 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -1 Query: 417 RSGQPPD-LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMV 244 R P D LK+ + + + +KLN+ G L D +MN+ ++ T E VNG K G Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63 Query: 243 VLRGNSVVMI 214 +RGN+V+ I Sbjct: 64 FIRGNNVLYI 73
>RUXE_CAEEL (Q9XTU6) Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm| protein E) (Sm-E) (SmE) Length = 90 Score = 39.3 bits (90), Expect = 0.006 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Frame = -1 Query: 336 GTLRGFDQFMNLVVDNTVEVNGDEK--TDIGMVVLRGNSVVMIEALE 202 G + GFD+FMN+V D EVN K IG ++L+G+++ +I A + Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHAAQ 87
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 38.9 bits (89), Expect = 0.008 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Frame = -1 Query: 366 IKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT-DIGMVVLRGNSVVMI 214 IKL +R G L+ FD MNLV+++ E+ E T +G V++RG+++V I Sbjct: 28 IKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 79
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 11/82 (13%) Frame = -1 Query: 411 GQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-----------NGDE 265 G+ + ++++ +++I L +R IGT + FD+ MNL++ + E +E Sbjct: 4 GKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREE 63 Query: 264 KTDIGMVVLRGNSVVMIEALEP 199 K +G V+LRG ++V + P Sbjct: 64 KRVLGFVLLRGENIVSLTVEGP 85
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 11/83 (13%) Frame = -1 Query: 369 QIKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGDEKTDIGMVVLRGNSV 223 + L R+ IGT + FD+ MNL++ N+ + +EK +G+V+LRG ++ Sbjct: 1 ECSLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 60 Query: 222 VMIEALEPIARSQ*YFDLPASGS 154 V + P + +P +G+ Sbjct: 61 VSMTVEGPPPKDTGIARVPLAGA 83
>RUXE_BRARE (Q7ZUG0) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 92 Score = 38.5 bits (88), Expect = 0.011 Identities = 18/68 (26%), Positives = 42/68 (61%), Gaps = 6/68 (8%) Frame = -1 Query: 390 KYMDKKLQIKL----NANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGN 229 +Y+ + +I + N + G + GFD++MNLV+D+ EV+ K +G ++L+G+ Sbjct: 23 RYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGD 82 Query: 228 SVVMIEAL 205 ++ +++++ Sbjct: 83 NITLLQSV 90
>RUXE_YEAST (Q12330) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)| (Sm-E) (SmE) Length = 94 Score = 38.1 bits (87), Expect = 0.014 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 9/54 (16%) Frame = -1 Query: 336 GTLRGFDQFMNLVVDNTVEV---NGDEKTDI------GMVVLRGNSVVMIEALE 202 G + GFD+FMN+V+D VE+ + D K D+ G ++L+G+++ +I + + Sbjct: 41 GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>LSM5_YEAST (P40089) U6 snRNA-associated Sm-like protein LSm5| Length = 93 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDI---------GMV 244 + K +++K+ I L +NR GTL GFD F+N+++++ VE D + + G + Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71 Query: 243 VLRGNSVVMI 214 +L GN++ ++ Sbjct: 72 LLSGNNIAIL 81
>LSMH_ENCCU (Q8SQH7) Probable U6 snRNA-associated Sm-like protein| Length = 70 Score = 37.0 bits (84), Expect = 0.031 Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVD-NTVEVNGDEKTDIGMVVLRGNSVV 220 LK Y+ +++++K + GTL GFD+ +NL++ ++VE + D+ ++ LRG +++ Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLMLTCSSVEGSEDK-----VLFLRGENIL 62 Query: 219 MI 214 + Sbjct: 63 FV 64
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I| Length = 147 Score = 35.8 bits (81), Expect = 0.068 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%) Frame = -1 Query: 384 MDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNG------------DEKTDIGMVV 241 ++ L + R +G L FD FMNLV+ + E +EK +G+V+ Sbjct: 10 LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69 Query: 240 LRGNSVVMIEALEP 199 LRG +V + P Sbjct: 70 LRGEFIVSLSVQGP 83
>RUXF_SCHPO (O59734) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 78 Score = 35.8 bits (81), Expect = 0.068 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNS 226 P L+ + K + ++L + GTL+ D +MNL + N E V+G + D+G +++R N+ Sbjct: 10 PFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNN 69 Query: 225 VVMI 214 V+ + Sbjct: 70 VLWV 73
>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated| protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 160 Score = 35.0 bits (79), Expect = 0.12 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 11/77 (14%) Frame = -1 Query: 387 YMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-----------VNGDEKTDIGMVV 241 +++ +++I L R IG + FD+ MN+++ E +G+EK +G+V+ Sbjct: 12 HLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVL 71 Query: 240 LRGNSVVMIEALEPIAR 190 +RG +V + P R Sbjct: 72 VRGEHIVSMTVDGPPPR 88
>MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protein 31)| Length = 88 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/67 (28%), Positives = 35/67 (52%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVLRGNSVVM 217 L ++ L + L +R+++G+L D MNL++D+ E G +G+V + SV Sbjct: 6 LSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEERMGSSSRMMGLVSVPRRSVKT 65 Query: 216 IEALEPI 196 I +P+ Sbjct: 66 IMIDKPV 72
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 35.0 bits (79), Expect = 0.12 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 15/80 (18%) Frame = -1 Query: 408 QPPDLKKY-MDKKLQIKLNANRVVIGTLRGFDQFMNLVV---DNTVEVNGDEKTD----- 256 +P DL + +D+ + +KL +R + G L +D+ +N+V+ + V + DE+TD Sbjct: 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKAL 68 Query: 255 ------IGMVVLRGNSVVMI 214 M+ +RG+SV++I Sbjct: 69 KTIRKHYEMLFVRGDSVILI 88
>RUXF_DROME (Q24297) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) (Membrane-associated protein Deb-B) Length = 88 Score = 34.7 bits (78), Expect = 0.15 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Frame = -1 Query: 414 SGQPPDLKKYMD----KKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV-NGDEKTDIG 250 +G P + K +++ K + +KL + G L D +MN+ + NT EV G ++G Sbjct: 3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLG 62 Query: 249 MVVLRGNSVVMIEALE 202 V++R N+V+ I+ +E Sbjct: 63 EVLIRCNNVLYIKGME 78
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 196 Score = 33.5 bits (75), Expect = 0.34 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE 280 L +D KL++ RV IG L FD+ MNLV++ +E Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIE 50
>RUXF_ARATH (Q9SUM2) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm| protein F) (Sm-F) (SmF) Length = 88 Score = 32.7 bits (73), Expect = 0.58 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNS 226 P L K + +KL G L D +MNL + NT E ++G ++G +++R N+ Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNN 69 Query: 225 VVMIEAL 205 V+ + + Sbjct: 70 VLYVRGV 76
>RUXX_PYRKO (Q5JIE0) Putative snRNP Sm-like protein| Length = 76 Score = 32.0 bits (71), Expect = 0.98 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVV-DNTVEVNGDEKTDIGMVVLRGNSVV 220 + K +DK + + L G L G+D +N+V+ D + +G+ G +V+RG++V+ Sbjct: 9 IHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIRGDNVL 68 Query: 219 MIEALE 202 + +E Sbjct: 69 ALSPVE 74
>RUXF_XENLA (P62321) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 32.0 bits (71), Expect = 0.98 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNS 226 P L K + +KL G L D +MN+ + NT E ++G +G V++R N+ Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68 Query: 225 VVMIEALE 202 V+ I +E Sbjct: 69 VLYIRGVE 76
>RUXF_MOUSE (P62307) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 32.0 bits (71), Expect = 0.98 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNS 226 P L K + +KL G L D +MN+ + NT E ++G +G V++R N+ Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68 Query: 225 VVMIEALE 202 V+ I +E Sbjct: 69 VLYIRGVE 76
>RUXF_HUMAN (P62306) Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)| (Sm-F) (SmF) Length = 86 Score = 32.0 bits (71), Expect = 0.98 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -1 Query: 402 PDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGDEKTDIGMVVLRGNS 226 P L K + +KL G L D +MN+ + NT E ++G +G V++R N+ Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68 Query: 225 VVMIEALE 202 V+ I +E Sbjct: 69 VLYIRGVE 76
>LSM2_YEAST (P38203) U6 snRNA-associated Sm-like protein LSm2 (Small nuclear| ribonucleoprotein D homolog SNP3) Length = 95 Score = 32.0 bits (71), Expect = 0.98 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = -1 Query: 393 KKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDN---TVEVNGDEKTDIGMVVLRGNSV 223 K +D+++ ++L + + GTL+ DQF+NL +DN T E + + +RG++V Sbjct: 8 KTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTV 67
>GLGB_SYNEL (Q8DLB8) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 766 Score = 32.0 bits (71), Expect = 0.98 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +1 Query: 199 WFKGFYHHNTISSQNHHPYVGFLISIDLHSVVHHQIH 309 WF+ F+H+N S +H F++++ VVH + H Sbjct: 524 WFRQFHHNNVTFSMWYHHSENFMLALSHDEVVHGKSH 560
>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 110 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 8/59 (13%) Frame = -1 Query: 366 IKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTD--------IGMVVLRGNSVVMI 214 I L N +I ++ FD+ N+V++N E+ ++K I + LRG+SV+++ Sbjct: 46 ISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVINRERFISKLFLRGDSVIVV 104
>IMMT_DROME (P91928) Putative mitochondrial inner membrane protein| Length = 841 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -1 Query: 399 DLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGD 268 +L+K ++ Q+ + V IG L+GF+ + VVD VE NG+ Sbjct: 327 ELEKAIELSAQLAVKEYNVAIGVLKGFNDDVRKVVDKAVE-NGE 369
>RUXX_PYRFU (Q8U0P4) Putative snRNP Sm-like protein| Length = 76 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = -1 Query: 396 LKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNT-VEVNGDEKTDIGMVVLRGNSVV 220 + K +DK + + L G L G+D +N+V+ N + +G+ G +V+RG++V+ Sbjct: 9 IHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRGDNVL 68 Query: 219 MIEALE 202 I E Sbjct: 69 AISPTE 74
>Y3406_METJA (Q60305) Hypothetical protein MJECS06| Length = 140 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Frame = -1 Query: 399 DLKKYM-----DKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKTDIGMVVLR 235 D K YM KK +I L+ +V GT++ D+F +V+D V D+K +++ + Sbjct: 74 DYKDYMLLFAHKKKCKIYLDNGMIVEGTVKAKDRFNIMVLDAKV----DDKEVERIIIQK 129 Query: 234 GNSVVMI 214 G+ V +I Sbjct: 130 GHIVALI 136
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 29.6 bits (65), Expect = 4.9 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 15/76 (19%) Frame = -1 Query: 366 IKLNANRVVIGTLRGFDQFMNLVVDNTVEV--------NGDEKTD-------IGMVVLRG 232 I N+ ++G ++ FD+ N+V++N E+ G +K I + LRG Sbjct: 44 INCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRG 103 Query: 231 NSVVMIEALEPIARSQ 184 +SV+++ P+A+++ Sbjct: 104 DSVILV-VKNPLAQAE 118
>GUAA_PROM9 (Q31DE7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 528 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Frame = -1 Query: 444 FVQSGATMSRSGQPPDLKKYMDKKLQIK---LNANRVVIGTLRGF---DQFMNLVVDNTV 283 F+ G R G+P L + DKK IK +NA I L+G +Q ++ + + Sbjct: 256 FIDQG--FMRKGEPEFLMNFFDKKFHIKVEYINARERFISKLKGITDPEQKRKIIGEEFI 313 Query: 282 EVNGDEKTDIG 250 V +E +G Sbjct: 314 RVFEEESNRLG 324
>VCAP_SHV21 (Q00999) Major capsid protein (MCP)| Length = 1371 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 13/56 (23%) Frame = -1 Query: 330 LRGFDQFMNLVVDN-----------TVEVNGD-EKTDIG-MVVLRGNSVVMIEALE 202 +R FD FM+ +VDN T E G +KT I VV+ GN ++ +E+L+ Sbjct: 321 MRNFDHFMSKLVDNPTSNLDNDAVDTFESTGSIQKTPISTSVVMVGNKLIALESLQ 376
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 17/78 (21%) Frame = -1 Query: 396 LKKYMDKKLQIKLNA--NRVVIGTLRGFDQFMNLVVDNTVEV--------NGDEKTD--- 256 L + + Q+ +N N+ ++G ++ FD+ N+V++N E+ G +K+ Sbjct: 32 LTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVN 91 Query: 255 ----IGMVVLRGNSVVMI 214 I + LRG+SV+++ Sbjct: 92 KDRYISKMFLRGDSVIVV 109
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 17/78 (21%) Frame = -1 Query: 396 LKKYMDKKLQIKLNA--NRVVIGTLRGFDQFMNLVVDNTVEV--------NGDEKTD--- 256 L + + Q+ +N N+ ++G ++ FD+ N+V++N E+ G +K+ Sbjct: 32 LTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVN 91 Query: 255 ----IGMVVLRGNSVVMI 214 I + LRG+SV+++ Sbjct: 92 KDRYISKMFLRGDSVIVV 109
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 17/78 (21%) Frame = -1 Query: 396 LKKYMDKKLQIKLNA--NRVVIGTLRGFDQFMNLVVDNTVEV--------NGDEKTD--- 256 L + + Q+ +N N+ ++G ++ FD+ N+V++N E+ G +K Sbjct: 31 LTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVN 90 Query: 255 ----IGMVVLRGNSVVMI 214 I + LRG+SV+++ Sbjct: 91 KDRFISKMFLRGDSVILV 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,167,693 Number of Sequences: 219361 Number of extensions: 1346228 Number of successful extensions: 4213 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 4056 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4186 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
