ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1n05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009548.1| Triticum aestivum clone wr1.pk151.f8:fis, full insert mRNA sequence Length = 779 Score = 654 bits (330), Expect = 0.0 Identities = 379/394 (96%), Gaps = 1/394 (0%) Strand = Plus / Minus Query: 173 ttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatgaa 232 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 ttagatgcccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatgaa 495 Query: 233 accttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccct 292 ||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct: 494 accctcagcgtcagcctggtcatagatctccccgttctcgaacgacgagatgtcctccct 435 Query: 293 gtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttcag 352 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 434 gtacaggctgtaggggctcttccgggacgcgacggtcaccgaccccttgtacagcttcag 375 Query: 353 ggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagccg 412 |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 374 ggtcaccgacccggtcgtcgtcgcggtgatggtctccatgaaggcgtccatggacagccg 315 Query: 413 gagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtc 472 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 cagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtc 255 Query: 473 cttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccgc 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 cttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccgc 195 Query: 533 catgacggtgccgccgggggttctcgtacacgcc 566 ||||| |||||||||||||| ||||||| ||||| Sbjct: 194 catgatggtgccgccggggg-tctcgtagacgcc 162
>gb|AY104216.1| Zea mays PCO109946 mRNA sequence Length = 1750 Score = 371 bits (187), Expect = 2e-99 Identities = 331/379 (87%) Strand = Plus / Minus Query: 175 agatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatgaaac 234 |||||||||||||||||||||| |||||||| || || |||||||||||||||||||| | Sbjct: 1538 agatacccttctccagcatcgcccggacccgtgtcggtaggccgtacagcctgatgaacc 1479 Query: 235 cttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccctgt 294 | || || ||||| |||| || ||||||||||| || ||||| ||||| || ||||||| Sbjct: 1478 cctcggcgtcagcttggttgtagatctccccgttctcaaacgaggagatatcttccctgt 1419 Query: 295 acaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttcaggg 354 |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct: 1418 acaggctgtaggggctcttccgggacgcgacgttcacggaacccttgtacagcttcaggg 1359 Query: 355 tcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagccgga 414 |||| || || || ||||||||||| | ||||||||||||||| || | |||| |||||| Sbjct: 1358 tcactgaaccagtggtcgtcgcggtaaccttctccatgaaggcatcaaaggactgccgga 1299 Query: 415 gcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtcct 474 ||||||| |||||||| || || ||||| ||||| |||||||||||||| | ||||||| Sbjct: 1298 gcgggtcaaaccagcggccagcatagaccagctcggcgtacttgagggcaatgatgtcct 1239 Query: 475 tccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccgcca 534 |||||||||| ||||||| |||||| ||||||||||| | |||||| |||||||| |||| Sbjct: 1238 tccactgcatggtctccctgtccagggtcagggactccaactcgcgtaccgcggctgcca 1179 Query: 535 tgacggtgccgccgggggt 553 ||| |||||| |||||||| Sbjct: 1178 tgatggtgccaccgggggt 1160
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 345 bits (174), Expect = 1e-91 Identities = 330/382 (86%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 7433445 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 7433386 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccc 291 | ||||||||||||||||||| || |||||||| || || || || |||||||| |||| Sbjct: 7433385 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtcttccc 7433326 Query: 292 tgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttca 351 ||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||| | Sbjct: 7433325 tgtacaggctgtatgggctcttccgggacgcgacgtttacggagcccttgtacagcttga 7433266 Query: 352 gggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagcc 411 | |||||||||||||| || |||||||| || ||||||||||| || || ||||| | | Sbjct: 7433265 gagtcacggagccggttgttgtcgcggtaatgttctccatgaacgcatcaatggattgtc 7433206 Query: 412 ggagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgt 471 |||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 7433205 ggagcgggtcgaaccaacggccagcgtagaccagctcggcgtacttgagggcaagcatgt 7433146 Query: 472 ccttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccg 531 ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| || || | Sbjct: 7433145 ccttccactgcattgtctccctgtccaaagtcaaggactcgagctcacggacagcagctg 7433086 Query: 532 ccatgacggtgccgccgggggt 553 |||||| |||||| |||||||| Sbjct: 7433085 ccatgatggtgccaccgggggt 7433064
>dbj|AK058994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F12, full insert sequence Length = 1290 Score = 345 bits (174), Expect = 1e-91 Identities = 330/382 (86%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 1055 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 996 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccc 291 | ||||||||||||||||||| || |||||||| || || || || |||||||| |||| Sbjct: 995 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtcttccc 936 Query: 292 tgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttca 351 ||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||| | Sbjct: 935 tgtacaggctgtatgggctcttccgggacgcgacgtttacggagcccttgtacagcttga 876 Query: 352 gggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagcc 411 | |||||||||||||| || |||||||| || ||||||||||| || || ||||| | | Sbjct: 875 gagtcacggagccggttgttgtcgcggtaatgttctccatgaacgcatcaatggattgtc 816 Query: 412 ggagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgt 471 |||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 815 ggagcgggtcgaaccaacggccagcgtagaccagctcggcgtacttgagggcaagcatgt 756 Query: 472 ccttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccg 531 ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| || || | Sbjct: 755 ccttccactgcattgtctccctgtccaaagtcaaggactcgagctcacggacagcagctg 696 Query: 532 ccatgacggtgccgccgggggt 553 |||||| |||||| |||||||| Sbjct: 695 ccatgatggtgccaccgggggt 674
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 345 bits (174), Expect = 1e-91 Identities = 330/382 (86%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 7433324 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 7433265 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccc 291 | ||||||||||||||||||| || |||||||| || || || || |||||||| |||| Sbjct: 7433264 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtcttccc 7433205 Query: 292 tgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttca 351 ||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||| | Sbjct: 7433204 tgtacaggctgtatgggctcttccgggacgcgacgtttacggagcccttgtacagcttga 7433145 Query: 352 gggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagcc 411 | |||||||||||||| || |||||||| || ||||||||||| || || ||||| | | Sbjct: 7433144 gagtcacggagccggttgttgtcgcggtaatgttctccatgaacgcatcaatggattgtc 7433085 Query: 412 ggagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgt 471 |||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 7433084 ggagcgggtcgaaccaacggccagcgtagaccagctcggcgtacttgagggcaagcatgt 7433025 Query: 472 ccttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccg 531 ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| || || | Sbjct: 7433024 ccttccactgcattgtctccctgtccaaagtcaaggactcgagctcacggacagcagctg 7432965 Query: 532 ccatgacggtgccgccgggggt 553 |||||| |||||| |||||||| Sbjct: 7432964 ccatgatggtgccaccgggggt 7432943
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 98782 Score = 345 bits (174), Expect = 1e-91 Identities = 330/382 (86%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 23121 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 23062 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccc 291 | ||||||||||||||||||| || |||||||| || || || || |||||||| |||| Sbjct: 23061 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtcttccc 23002 Query: 292 tgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttca 351 ||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||| | Sbjct: 23001 tgtacaggctgtatgggctcttccgggacgcgacgtttacggagcccttgtacagcttga 22942 Query: 352 gggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagcc 411 | |||||||||||||| || |||||||| || ||||||||||| || || ||||| | | Sbjct: 22941 gagtcacggagccggttgttgtcgcggtaatgttctccatgaacgcatcaatggattgtc 22882 Query: 412 ggagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgt 471 |||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 22881 ggagcgggtcgaaccaacggccagcgtagaccagctcggcgtacttgagggcaagcatgt 22822 Query: 472 ccttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccg 531 ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| || || | Sbjct: 22821 ccttccactgcattgtctccctgtccaaagtcaaggactcgagctcacggacagcagctg 22762 Query: 532 ccatgacggtgccgccgggggt 553 |||||| |||||| |||||||| Sbjct: 22761 ccatgatggtgccaccgggggt 22740
>dbj|AK071066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081B09, full insert sequence Length = 1752 Score = 337 bits (170), Expect = 2e-89 Identities = 329/382 (86%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 1496 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 1437 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtcctccc 291 | ||||||||||||||||||| || |||||||| || || || || |||||||| |||| Sbjct: 1436 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtcttccc 1377 Query: 292 tgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttgtacagcttca 351 ||||||||||||| |||| |||||||||||||||| | || ||||||||||||||||| | Sbjct: 1376 tgtacaggctgtatgggcccttccgggacgcgacgtttacggagcccttgtacagcttga 1317 Query: 352 gggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagcc 411 | |||||||||||||| || |||||||| || ||||||||||| || || ||||| | | Sbjct: 1316 gagtcacggagccggttgttgtcgcggtaatgttctccatgaacgcatcaatggattgtc 1257 Query: 412 ggagcgggtcgaaccagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgt 471 |||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||| Sbjct: 1256 ggagcgggtcgaaccaacggccagcgtagaccagctcggcgtacttgagggcaagcatgt 1197 Query: 472 ccttccactgcatcgtctcccggtccagtgtcagggactcgagctcgcggaccgcggccg 531 ||||||||||||| ||||||| ||||| |||| |||||||||||| ||||| || || | Sbjct: 1196 ccttccactgcattgtctccctgtccaaagtcaaggactcgagctcacggacagcagctg 1137 Query: 532 ccatgacggtgccgccgggggt 553 |||||| |||||| |||||||| Sbjct: 1136 ccatgatggtgccaccgggggt 1115
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 143 bits (72), Expect = 7e-31 Identities = 222/272 (81%) Strand = Plus / Minus Query: 246 gcctggtcatatatctccccgttttcgaacgatgagatgtcctccctgtacaggctgtag 305 ||||||| |||||||| || || |||||||| || |||||||||| ||||||| ||||| Sbjct: 77658 gcctggttatatatctttccattctcgaacgaggaaatgtcctccccgtacaggatgtag 77599 Query: 306 gggctcttccgggacgcgacggtcaccgagcccttgtacagcttcagggtcacggagccg 365 |||||||||||||| || | | | || || |||||||||| ||| ||||| || || || Sbjct: 77598 gggctcttccgggatgcaatgtttactgaacccttgtacaacttgagggtaaccgaacca 77539 Query: 366 gtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagccggagcgggtcgaac 425 || || ||| |||| | ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 77538 gttgttgtctcggtaaccttctccatgaaggcatccatggattgctggagcgggtcgaac 77479 Query: 426 cagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtccttccactgcatc 485 ||||| || | || || | || | |||||||||||| || ||||| ||||||||||| Sbjct: 77478 cagcggccaacataaaccaacttggtgtacttgagggcaagaatgtctttccactgcatg 77419 Query: 486 gtctcccggtccagtgtcagggactcgagctc 517 |||||| || || ||||||||||||||||| Sbjct: 77418 atctccctatcaagggtcagggactcgagctc 77387 Score = 81.8 bits (41), Expect = 2e-12 Identities = 190/237 (80%), Gaps = 2/237 (0%) Strand = Plus / Minus Query: 282 atgtcctccctgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttg 341 |||||||||| ||||||||||||||||||||||||||| || | | | || |||||| Sbjct: 77272 atgtcctccccgtacaggctgtaggggctcttccgggatgc-aattttagtgaacccttg 77214 Query: 342 tacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtcc 401 |||| ||| ||||| | || || || || ||| |||| | ||||||||||||||| ||| Sbjct: 77213 tacaacttgagggtatccgaaccagttgttgtctcggtaaccttctccatgaaggcatcc 77154 Query: 402 atggacagccggagcgggtcgaaccagcgccccgcgtagacgagctccgcgta-cttgag 460 ||||| || |||| |||||||||||||| || | || || | || ||||| ||||| Sbjct: 77153 atggattgctggagtgggtcgaaccagcggccaacataaaccaacttggcgtattttgag 77094 Query: 461 ggcgagcatgtccttccactgcatcgtctcccggtccagtgtcagggactcgagctc 517 ||| || ||||| ||||||||||| |||||| || || ||||||||||||||||| Sbjct: 77093 ggcaagaatgtctttccactgcatgatctccctatcaagggtcagggactcgagctc 77037
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 143 bits (72), Expect = 7e-31 Identities = 222/272 (81%) Strand = Plus / Minus Query: 246 gcctggtcatatatctccccgttttcgaacgatgagatgtcctccctgtacaggctgtag 305 ||||||| |||||||| || || |||||||| || |||||||||| ||||||| ||||| Sbjct: 11291300 gcctggttatatatctttccattctcgaacgaggaaatgtcctccccgtacaggatgtag 11291241 Query: 306 gggctcttccgggacgcgacggtcaccgagcccttgtacagcttcagggtcacggagccg 365 |||||||||||||| || | | | || || |||||||||| ||| ||||| || || || Sbjct: 11291240 gggctcttccgggatgcaatgtttactgaacccttgtacaacttgagggtaaccgaacca 11291181 Query: 366 gtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagccggagcgggtcgaac 425 || || ||| |||| | ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 11291180 gttgttgtctcggtaaccttctccatgaaggcatccatggattgctggagcgggtcgaac 11291121 Query: 426 cagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtccttccactgcatc 485 ||||| || | || || | || | |||||||||||| || ||||| ||||||||||| Sbjct: 11291120 cagcggccaacataaaccaacttggtgtacttgagggcaagaatgtctttccactgcatg 11291061 Query: 486 gtctcccggtccagtgtcagggactcgagctc 517 |||||| || || ||||||||||||||||| Sbjct: 11291060 atctccctatcaagggtcagggactcgagctc 11291029 Score = 81.8 bits (41), Expect = 2e-12 Identities = 190/237 (80%), Gaps = 2/237 (0%) Strand = Plus / Minus Query: 282 atgtcctccctgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttg 341 |||||||||| ||||||||||||||||||||||||||| || | | | || |||||| Sbjct: 11290914 atgtcctccccgtacaggctgtaggggctcttccgggatgc-aattttagtgaacccttg 11290856 Query: 342 tacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtcc 401 |||| ||| ||||| | || || || || ||| |||| | ||||||||||||||| ||| Sbjct: 11290855 tacaacttgagggtatccgaaccagttgttgtctcggtaaccttctccatgaaggcatcc 11290796 Query: 402 atggacagccggagcgggtcgaaccagcgccccgcgtagacgagctccgcgta-cttgag 460 ||||| || |||| |||||||||||||| || | || || | || ||||| ||||| Sbjct: 11290795 atggattgctggagtgggtcgaaccagcggccaacataaaccaacttggcgtattttgag 11290736 Query: 461 ggcgagcatgtccttccactgcatcgtctcccggtccagtgtcagggactcgagctc 517 ||| || ||||| ||||||||||| |||||| || || ||||||||||||||||| Sbjct: 11290735 ggcaagaatgtctttccactgcatgatctccctatcaagggtcagggactcgagctc 11290679
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 143 bits (72), Expect = 7e-31 Identities = 222/272 (81%) Strand = Plus / Minus Query: 246 gcctggtcatatatctccccgttttcgaacgatgagatgtcctccctgtacaggctgtag 305 ||||||| |||||||| || || |||||||| || |||||||||| ||||||| ||||| Sbjct: 11370489 gcctggttatatatctttccattctcgaacgaggaaatgtcctccccgtacaggatgtag 11370430 Query: 306 gggctcttccgggacgcgacggtcaccgagcccttgtacagcttcagggtcacggagccg 365 |||||||||||||| || | | | || || |||||||||| ||| ||||| || || || Sbjct: 11370429 gggctcttccgggatgcaatgtttactgaacccttgtacaacttgagggtaaccgaacca 11370370 Query: 366 gtcgtcgtcgcggtgatcttctccatgaaggcgtccatggacagccggagcgggtcgaac 425 || || ||| |||| | ||||||||||||||| |||||||| || |||||||||||||| Sbjct: 11370369 gttgttgtctcggtaaccttctccatgaaggcatccatggattgctggagcgggtcgaac 11370310 Query: 426 cagcgccccgcgtagacgagctccgcgtacttgagggcgagcatgtccttccactgcatc 485 ||||| || | || || | || | |||||||||||| || ||||| ||||||||||| Sbjct: 11370309 cagcggccaacataaaccaacttggtgtacttgagggcaagaatgtctttccactgcatg 11370250 Query: 486 gtctcccggtccagtgtcagggactcgagctc 517 |||||| || || ||||||||||||||||| Sbjct: 11370249 atctccctatcaagggtcagggactcgagctc 11370218 Score = 81.8 bits (41), Expect = 2e-12 Identities = 190/237 (80%), Gaps = 2/237 (0%) Strand = Plus / Minus Query: 282 atgtcctccctgtacaggctgtaggggctcttccgggacgcgacggtcaccgagcccttg 341 |||||||||| ||||||||||||||||||||||||||| || | | | || |||||| Sbjct: 11370103 atgtcctccccgtacaggctgtaggggctcttccgggatgc-aattttagtgaacccttg 11370045 Query: 342 tacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcgtcc 401 |||| ||| ||||| | || || || || ||| |||| | ||||||||||||||| ||| Sbjct: 11370044 tacaacttgagggtatccgaaccagttgttgtctcggtaaccttctccatgaaggcatcc 11369985 Query: 402 atggacagccggagcgggtcgaaccagcgccccgcgtagacgagctccgcgta-cttgag 460 ||||| || |||| |||||||||||||| || | || || | || ||||| ||||| Sbjct: 11369984 atggattgctggagtgggtcgaaccagcggccaacataaaccaacttggcgtattttgag 11369925 Query: 461 ggcgagcatgtccttccactgcatcgtctcccggtccagtgtcagggactcgagctc 517 ||| || ||||| ||||||||||| |||||| || || ||||||||||||||||| Sbjct: 11369924 ggcaagaatgtctttccactgcatgatctccctatcaagggtcagggactcgagctc 11369868
>dbj|AK058700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C03, full insert sequence Length = 338 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 172 cttagatacccttctccagcatcgcgcggacccgggtggggaggccgtacagcctgatga 231 ||||||| |||||||||||||| || ||||| | ||| ||||| || || |||||||||| Sbjct: 117 cttagatgcccttctccagcattgcccggactctggtagggagaccatatagcctgatga 58 Query: 232 aaccttcagcatcagcctggtcatatatctccccgttttcgaacgatgagatgtc 286 | ||||||||||||||||||| || |||||||| || || || || |||||||| Sbjct: 57 acccttcagcatcagcctggttgtagatctccccattctcaaatgaggagatgtc 3
>ref|NM_118616.3| Arabidopsis thaliana ATP binding / argininosuccinate synthase AT4G24830 mRNA, complete cds Length = 1750 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 1372 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 1313 Query: 399 tccatggac 407 ||||||||| Sbjct: 1312 tccatggac 1304
>gb|AY091319.1| Arabidopsis thaliana putative argininosuccinate synthase (At4g24830) mRNA, complete cds Length = 1516 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 1319 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 1260 Query: 399 tccatggac 407 ||||||||| Sbjct: 1259 tccatggac 1251
>gb|AY065252.1| Arabidopsis thaliana putative argininosuccinate synthase (At4g24830) mRNA, complete cds Length = 1718 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 1372 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 1313 Query: 399 tccatggac 407 ||||||||| Sbjct: 1312 tccatggac 1304
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62 Length = 197070 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 67557 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 67616 Query: 399 tccatggac 407 ||||||||| Sbjct: 67617 tccatggac 67625
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I7 (ESSA project) Length = 95185 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 38133 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 38192 Query: 399 tccatggac 407 ||||||||| Sbjct: 38193 tccatggac 38201
>emb|BX827386.1|CNS0A2HY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS48ZH08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1721 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 1356 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 1297 Query: 399 tccatggac 407 ||||||||| Sbjct: 1296 tccatggac 1288
>emb|BX826988.1|CNS0A2FT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB83ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 988 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 339 ttgtacagcttcagggtcacggagccggtcgtcgtcgcggtgatcttctccatgaaggcg 398 |||||||||||||| ||||| || || || || ||| |||| |||||||||||||| ||| Sbjct: 739 ttgtacagcttcagtgtcacagatcccgtggttgtctcggttatcttctccatgaaagcg 680 Query: 399 tccatggac 407 ||||||||| Sbjct: 679 tccatggac 671
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 437 gtagacgagctccgcgtacttgagggcgagcatgtcc 473 |||||||||||| ||||||||| ||| |||||||||| Sbjct: 272470 gtagacgagctcggcgtacttgggggagagcatgtcc 272506
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Minus Query: 437 gtagacgagctccgcgtacttgagggcgagcatgtcc 473 |||||||||||| ||||||||| ||| |||||||||| Sbjct: 1616971 gtagacgagctcggcgtacttgggggagagcatgtcc 1616935
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 gatgaaaccttcagcatcagc 247 ||||||||||||||||||||| Sbjct: 900868 gatgaaaccttcagcatcagc 900888
>gb|AC159454.1| Trypanosoma brucei chromosome 7 clone RPCI93-6C8, complete sequence Length = 150601 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gatgaaaccttcagcatcagc 247 ||||||||||||||||||||| Sbjct: 138996 gatgaaaccttcagcatcagc 138976
>gb|AC159429.1| Trypanosoma brucei chromosome 7 clone RPCI93-28B13, complete sequence Length = 152128 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 gatgaaaccttcagcatcagc 247 ||||||||||||||||||||| Sbjct: 92009 gatgaaaccttcagcatcagc 91989
>ref|XM_749164.1| Aspergillus fumigatus Af293 siderochrome-iron transporter (Afu3g13670) partial mRNA Length = 1758 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 516 tcgcggaccgcggccgccatgacgg 540 |||||| |||||||||||||||||| Sbjct: 1406 tcgcggtccgcggccgccatgacgg 1382
>emb|CR728314.2|CNS0GOWW Tetraodon nigroviridis full-length cDNA Length = 1369 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 544 cgccgggggttctcgtacacg 564 ||||||||||||||||||||| Sbjct: 803 cgccgggggttctcgtacacg 783
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 gtcgtcgtcgcggtgatcttc 386 ||||||||||||||||||||| Sbjct: 3274891 gtcgtcgtcgcggtgatcttc 3274871
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 335 gcccttgtacagcttcagggtcacggagccggt 367 ||||||||||||||||||| ||||| |||||| Sbjct: 1200933 gcccttgtacagcttcaggcgcacggtgccggt 1200965
>gb|AY860817.1| Chlamydomonas reinhardtii putative chloroplast 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase precursor (HDS) mRNA, complete cds; nuclear gene for chloroplast product Length = 2868 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 tcttctccatgaaggcgtcca 402 ||||||||||||||||||||| Sbjct: 665 tcttctccatgaaggcgtcca 685
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 cggtgatcttctccatgaagg 396 ||||||||||||||||||||| Sbjct: 107788 cggtgatcttctccatgaagg 107768
>dbj|D10089.1|HS5GH Mouse cytomegalovirus 1 gH gene for glycoprotein H, complete cds Length = 2847 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 cggtgatcttctccatgaagg 396 ||||||||||||||||||||| Sbjct: 836 cggtgatcttctccatgaagg 856
>gb|L18782.1|HS5GLYCOPH Murine cytomegalovirus clone HindIII C glycoprotein H (gH) gene, complete cds Length = 2542 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 cggtgatcttctccatgaagg 396 ||||||||||||||||||||| Sbjct: 677 cggtgatcttctccatgaagg 697
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 539 ggtgccgccgggggttctcgtacacgcc 566 |||||||||||||| ||||||||||||| Sbjct: 240240 ggtgccgccggggg-tctcgtacacgcc 240214
>gb|AC167232.5| Mus musculus BAC RP24-496C19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174683 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tcctccctgtacaggctgta 304 |||||||||||||||||||| Sbjct: 105277 tcctccctgtacaggctgta 105258
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tcgtcgtcgcggtgatcttc 386 |||||||||||||||||||| Sbjct: 2147776 tcgtcgtcgcggtgatcttc 2147795
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 539 ggtgccgccgggggttctcgtacacgcc 566 |||||||||||||| ||||||||||||| Sbjct: 171658 ggtgccgccggggg-tctcgtacacgcc 171632
>gb|AC154525.2| Mus musculus BAC clone RP24-68I9 from chromosome 14, complete sequence Length = 175953 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cggtgatcttctccatgaag 395 |||||||||||||||||||| Sbjct: 18046 cggtgatcttctccatgaag 18065
>emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on chromosome 9, complete sequence Length = 108785 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tgaaatcactagaaaataca 96 |||||||||||||||||||| Sbjct: 29483 tgaaatcactagaaaataca 29502
>emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial fkbD gene encoding FK506 polyketide synthase and cytochrome P-450-9-deoxo-FK506 hydroxylase, respectively Length = 19791 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cggagccggtcgtcgtcgcg 377 |||||||||||||||||||| Sbjct: 15787 cggagccggtcgtcgtcgcg 15806
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tcgtcgtcgcggtgatcttc 386 |||||||||||||||||||| Sbjct: 71782 tcgtcgtcgcggtgatcttc 71801
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tcgtcgtcgcggtgatcttc 386 |||||||||||||||||||| Sbjct: 226765 tcgtcgtcgcggtgatcttc 226784
>emb|CR927553.8| Zebrafish DNA sequence from clone DKEY-206P8 in linkage group 17, complete sequence Length = 162064 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 agcctggtcatatatctccc 264 |||||||||||||||||||| Sbjct: 128531 agcctggtcatatatctccc 128512
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aaaacagaatattttattcc 155 |||||||||||||||||||| Sbjct: 1864499 aaaacagaatattttattcc 1864518
>gb|AF322013.1|AF322012S2 Bradyrhizobium japonicum symbiotic gene region, part 2 of 2 Length = 230573 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 gaccgcggccgccatgacgg 540 |||||||||||||||||||| Sbjct: 36903 gaccgcggccgccatgacgg 36922
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 gaccgcggccgccatgacgg 540 |||||||||||||||||||| Sbjct: 2095388 gaccgcggccgccatgacgg 2095407
>dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13 Length = 75709 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aaacaaaacaaaaactcgacaaag 60 |||||||||||||||| ||||||| Sbjct: 31768 aaacaaaacaaaaactagacaaag 31745
>gb|AC122180.9| Mus musculus chromosome 7, clone RP24-296E5, complete sequence Length = 167791 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tgaaacaaaacaaaaactcg 54 |||||||||||||||||||| Sbjct: 18603 tgaaacaaaacaaaaactcg 18584
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 cgccatgacggtgccgccgg 549 |||||||||||||||||||| Sbjct: 2896675 cgccatgacggtgccgccgg 2896656 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tcgtcgtcgcggtgatcttc 386 |||||||||||||||||||| Sbjct: 1783139 tcgtcgtcgcggtgatcttc 1783158
>emb|AL772216.15| Mouse DNA sequence from clone RP23-153M22 on chromosome 2, complete sequence Length = 212233 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aaacaaaacaaaaactcgacaaag 60 |||||||||||||||| ||||||| Sbjct: 25855 aaacaaaacaaaaacttgacaaag 25832
>gb|AC134536.5| Mus musculus BAC clone RP24-386B19 from 7, complete sequence Length = 163463 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tgaaacaaaacaaaaactcg 54 |||||||||||||||||||| Sbjct: 95064 tgaaacaaaacaaaaactcg 95083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,261,651 Number of Sequences: 3902068 Number of extensions: 5261651 Number of successful extensions: 248455 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 247684 Number of HSP's gapped (non-prelim): 795 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
