Clone Name | rbasd1n02 |
---|---|
Clone Library Name | barley_pub |
>ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6)| (Endo-1,4-beta-glucanase 2) (Endo-1,3-beta-glucanase 2) (Laminarinase-2) Length = 779 Score = 34.3 bits (77), Expect = 0.073 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +2 Query: 20 ISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQ 160 IS L +N SH I N CQL+ +P A+ C P+ D+ GQ Sbjct: 285 ISLLDSNTIISSHKI-NGLICQLSADSVPSIDMAAGCYPVYCDLSGQ 330
>GATM_MOUSE (Q9D964) Glycine amidinotransferase, mitochondrial precursor (EC| 2.1.4.1) (L-arginine:glycine amidinotransferase) (Transamidinase) (AT) Length = 423 Score = 31.2 bits (69), Expect = 0.62 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +2 Query: 59 SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166 S +NSC + THPLP P S + +PLE +VG+ E Sbjct: 45 SSRNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84
>GATM_RAT (P50442) Glycine amidinotransferase, mitochondrial precursor (EC| 2.1.4.1) (L-arginine:glycine amidinotransferase) (Transamidinase) (AT) Length = 423 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +2 Query: 59 SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166 S +NSC + THPLP P S + +PLE +VG+ E Sbjct: 45 SSQNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84
>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1| Length = 805 Score = 30.4 bits (67), Expect = 1.1 Identities = 28/107 (26%), Positives = 40/107 (37%) Frame = +2 Query: 14 PXISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQR 193 P I +H + + + + T PLP S S L R Sbjct: 612 PSIKMIHEDGPTTTAAAAPLASAAATRRPLPSRDSEFSLP-----------------LGR 654 Query: 194 RVLHEEDEAALGRAKVVPQRELDGPGHGLPGGRTVAHGGHLLQPAHD 334 R+ H + +A L AKV+P ++L G G GG G H L A + Sbjct: 655 RMSHAQHDARLLNAKVIP-KQLGKAGGGAAGGG--VGGAHALMNARN 698
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 41 ATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQ 190 ATC+ ++ +N CT Q TT PL +SC P+ + +H Q Sbjct: 1459 ATCKLYTTQNKCTSQ-TTGPLSCLWFDNSCSPITDVTCSAIVQSGLDHAQ 1507
>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (Protein| glide-2) Length = 613 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 8 THPXISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCE 133 +H SYL ++ T +SH + S + PL + S++ CE Sbjct: 298 SHCTCSYLDDSTTARSHQLSQSSNYGTNSWPLSGSESSAPCE 339
>STE12_KLULA (Q08400) Protein STE12| Length = 666 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +2 Query: 107 PAHSASSCEPLESDVV-GQVEVLDAEHLQRRVLHEEDEAALGRAKVVPQRELD 262 P ++ EP ES+VV +V+++D + + H E + + +VPQ +L+ Sbjct: 235 PVSASKDVEPFESNVVEDEVQIVDNNKMCYGLPHSESNNYVPQQLIVPQSDLE 287
>ISPG_SILPO (Q5LQ99) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 375 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -3 Query: 397 NGVVTDCGRGENK-GKSLLNDHVVRRLEKVAAVRDGASARKA 275 +G+V G+ +K + DH+V +EK AA D ASA +A Sbjct: 332 SGMVYLAGKASHKMSNERMIDHIVEEVEKKAAALDAASAAEA 373
>UROM_MOUSE (Q91X17) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)| (THP) Length = 642 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 2 STTHPXISYLHNNATCQSHSIKNSCTCQ 85 ST S HNNATC + +C+CQ Sbjct: 26 STEARRCSECHNNATCTVDGVVTTCSCQ 53
>CNTRB_MOUSE (Q8CB62) Centrobin (LYST-interacting protein 8)| Length = 887 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Frame = +2 Query: 104 PPAHSASSCEPLESD------VVGQVEVLDA---EHLQRRVLHEEDEAALGRAKVVPQRE 256 PP + +S +PLE G L+A +H R EED + G A++ P + Sbjct: 638 PPFQNQNSFQPLEPKPDVTPPTAGPFSALEAFTDDHRAERPFPEEDPGSDGDARLPPASQ 697 Query: 257 LDG 265 L+G Sbjct: 698 LEG 700
>MTM1_MORSP (P11408) Modification methylase MspI (EC 2.1.1.37)| (Cytosine-specific methyltransferase MspI) (M.MspI) Length = 418 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2 Query: 98 PLPPAHSASSCEPLESDVVGQVEVLDAEHLQRRVLHEEDE 217 P PP S E LESDV G +EHLQ+ L ++D+ Sbjct: 275 PKPPMISKDIGEVLESDVTG---YSISEHLQKSYLFKKDD 311
>SAE2_YEAST (P46946) Protein SAE2| Length = 345 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/68 (25%), Positives = 27/68 (39%) Frame = +2 Query: 65 KNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQRRVLHEEDEAALGRAKVV 244 +N T QL +PP S + G + D E V+HE+D + + + Sbjct: 108 ENKHTVQLPLVTMPPNRHKRKISEFSSPLNGLNNLSDLEDCSDTVIHEKDNDKENKTRKL 167 Query: 245 PQRELDGP 268 EL+ P Sbjct: 168 LGIELENP 175
>GATM_HUMAN (P50440) Glycine amidinotransferase, mitochondrial precursor (EC| 2.1.4.1) (L-arginine:glycine amidinotransferase) (Transamidinase) (AT) Length = 423 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +2 Query: 59 SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166 S +NSC T PLP P S + +PLE +VG+ E Sbjct: 45 SSRNSCAADDKATEPLPKDCPVSSYNEWDPLEEVIVGRAE 84
>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1246 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +2 Query: 14 PXISYLHNNATCQSHSI--KNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHL 187 P I YLH A C + I + + H L A+ + LES+V+ EVL E + Sbjct: 936 PYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGI 995 Query: 188 Q 190 + Sbjct: 996 K 996
>IL2RB_RAT (P26896) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 537 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +2 Query: 11 HPXISYLHNNATCQSHSIKN-SCTCQLTTHPLPPAHSASSCEPLESDVV 154 H H N TC+ ++ S C L PLP + S +S + L VV Sbjct: 62 HAKSDMRHWNKTCELTPVRQASWACNLILGPLPDSQSLTSVDLLSLSVV 110
>GLND_PSYAR (Q4FUP5) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 915 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 346 LNDHVVRRLEKVAAVRDGASARKAVSGSVQFPLWDDFRATKCGLVLF 206 +ND + R LE+ +R SAR V + L+ F K L LF Sbjct: 50 INDDISRALERGVNIRQLVSARACVIDDLLIGLFKWFELDKTDLALF 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,678,613 Number of Sequences: 219361 Number of extensions: 871132 Number of successful extensions: 3176 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3175 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)