ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6) (E... 34 0.073
2GATM_MOUSE (Q9D964) Glycine amidinotransferase, mitochondrial pr... 31 0.62
3GATM_RAT (P50442) Glycine amidinotransferase, mitochondrial prec... 31 0.81
4ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1 30 1.1
5G168_PARPR (P17053) G surface protein, allelic form 168 precursor 30 1.4
6GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (... 30 1.4
7STE12_KLULA (Q08400) Protein STE12 29 2.3
8ISPG_SILPO (Q5LQ99) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 29 3.1
9UROM_MOUSE (Q91X17) Uromodulin precursor (Tamm-Horsfall urinary ... 29 3.1
10CNTRB_MOUSE (Q8CB62) Centrobin (LYST-interacting protein 8) 28 4.0
11MTM1_MORSP (P11408) Modification methylase MspI (EC 2.1.1.37) (C... 28 5.2
12SAE2_YEAST (P46946) Protein SAE2 27 8.9
13GATM_HUMAN (P50440) Glycine amidinotransferase, mitochondrial pr... 27 8.9
14JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-contai... 27 8.9
15IL2RB_RAT (P26896) Interleukin-2 receptor beta chain precursor (... 27 8.9
16GLND_PSYAR (Q4FUP5) [Protein-PII] uridylyltransferase (EC 2.7.7.... 27 8.9

>ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6)|
           (Endo-1,4-beta-glucanase 2) (Endo-1,3-beta-glucanase 2)
           (Laminarinase-2)
          Length = 779

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 20  ISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQ 160
           IS L +N    SH I N   CQL+   +P    A+ C P+  D+ GQ
Sbjct: 285 ISLLDSNTIISSHKI-NGLICQLSADSVPSIDMAAGCYPVYCDLSGQ 330



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>GATM_MOUSE (Q9D964) Glycine amidinotransferase, mitochondrial precursor (EC|
           2.1.4.1) (L-arginine:glycine amidinotransferase)
           (Transamidinase) (AT)
          Length = 423

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 59  SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166
           S +NSC  +   THPLP   P  S +  +PLE  +VG+ E
Sbjct: 45  SSRNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84



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>GATM_RAT (P50442) Glycine amidinotransferase, mitochondrial precursor (EC|
           2.1.4.1) (L-arginine:glycine amidinotransferase)
           (Transamidinase) (AT)
          Length = 423

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 59  SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166
           S +NSC  +   THPLP   P  S +  +PLE  +VG+ E
Sbjct: 45  SSQNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84



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>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1|
          Length = 805

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 28/107 (26%), Positives = 40/107 (37%)
 Frame = +2

Query: 14  PXISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQR 193
           P I  +H +    + +     +   T  PLP   S  S                   L R
Sbjct: 612 PSIKMIHEDGPTTTAAAAPLASAAATRRPLPSRDSEFSLP-----------------LGR 654

Query: 194 RVLHEEDEAALGRAKVVPQRELDGPGHGLPGGRTVAHGGHLLQPAHD 334
           R+ H + +A L  AKV+P ++L   G G  GG     G H L  A +
Sbjct: 655 RMSHAQHDARLLNAKVIP-KQLGKAGGGAAGGG--VGGAHALMNARN 698



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>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 41   ATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQ 190
            ATC+ ++ +N CT Q TT PL      +SC P+       +     +H Q
Sbjct: 1459 ATCKLYTTQNKCTSQ-TTGPLSCLWFDNSCSPITDVTCSAIVQSGLDHAQ 1507



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>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (Protein|
           glide-2)
          Length = 613

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 8   THPXISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCE 133
           +H   SYL ++ T +SH +  S      + PL  + S++ CE
Sbjct: 298 SHCTCSYLDDSTTARSHQLSQSSNYGTNSWPLSGSESSAPCE 339



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>STE12_KLULA (Q08400) Protein STE12|
          Length = 666

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 107 PAHSASSCEPLESDVV-GQVEVLDAEHLQRRVLHEEDEAALGRAKVVPQRELD 262
           P  ++   EP ES+VV  +V+++D   +   + H E    + +  +VPQ +L+
Sbjct: 235 PVSASKDVEPFESNVVEDEVQIVDNNKMCYGLPHSESNNYVPQQLIVPQSDLE 287



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>ISPG_SILPO (Q5LQ99) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 375

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 397 NGVVTDCGRGENK-GKSLLNDHVVRRLEKVAAVRDGASARKA 275
           +G+V   G+  +K     + DH+V  +EK AA  D ASA +A
Sbjct: 332 SGMVYLAGKASHKMSNERMIDHIVEEVEKKAAALDAASAAEA 373



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>UROM_MOUSE (Q91X17) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)|
           (THP)
          Length = 642

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 2   STTHPXISYLHNNATCQSHSIKNSCTCQ 85
           ST     S  HNNATC    +  +C+CQ
Sbjct: 26  STEARRCSECHNNATCTVDGVVTTCSCQ 53



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>CNTRB_MOUSE (Q8CB62) Centrobin (LYST-interacting protein 8)|
          Length = 887

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
 Frame = +2

Query: 104 PPAHSASSCEPLESD------VVGQVEVLDA---EHLQRRVLHEEDEAALGRAKVVPQRE 256
           PP  + +S +PLE          G    L+A   +H   R   EED  + G A++ P  +
Sbjct: 638 PPFQNQNSFQPLEPKPDVTPPTAGPFSALEAFTDDHRAERPFPEEDPGSDGDARLPPASQ 697

Query: 257 LDG 265
           L+G
Sbjct: 698 LEG 700



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>MTM1_MORSP (P11408) Modification methylase MspI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase MspI) (M.MspI)
          Length = 418

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 98  PLPPAHSASSCEPLESDVVGQVEVLDAEHLQRRVLHEEDE 217
           P PP  S    E LESDV G      +EHLQ+  L ++D+
Sbjct: 275 PKPPMISKDIGEVLESDVTG---YSISEHLQKSYLFKKDD 311



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>SAE2_YEAST (P46946) Protein SAE2|
          Length = 345

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = +2

Query: 65  KNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQRRVLHEEDEAALGRAKVV 244
           +N  T QL    +PP           S + G   + D E     V+HE+D     + + +
Sbjct: 108 ENKHTVQLPLVTMPPNRHKRKISEFSSPLNGLNNLSDLEDCSDTVIHEKDNDKENKTRKL 167

Query: 245 PQRELDGP 268
              EL+ P
Sbjct: 168 LGIELENP 175



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>GATM_HUMAN (P50440) Glycine amidinotransferase, mitochondrial precursor (EC|
           2.1.4.1) (L-arginine:glycine amidinotransferase)
           (Transamidinase) (AT)
          Length = 423

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 59  SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 166
           S +NSC      T PLP   P  S +  +PLE  +VG+ E
Sbjct: 45  SSRNSCAADDKATEPLPKDCPVSSYNEWDPLEEVIVGRAE 84



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>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)|
          Length = 1246

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 14   PXISYLHNNATCQSHSI--KNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHL 187
            P I YLH  A C  + I  +     +   H L  A+     + LES+V+   EVL  E +
Sbjct: 936  PYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGI 995

Query: 188  Q 190
            +
Sbjct: 996  K 996



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>IL2RB_RAT (P26896) Interleukin-2 receptor beta chain precursor (IL-2|
           receptor) (P70-75) (High affinity IL-2 receptor beta
           subunit) (CD122 antigen)
          Length = 537

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 11  HPXISYLHNNATCQSHSIKN-SCTCQLTTHPLPPAHSASSCEPLESDVV 154
           H      H N TC+   ++  S  C L   PLP + S +S + L   VV
Sbjct: 62  HAKSDMRHWNKTCELTPVRQASWACNLILGPLPDSQSLTSVDLLSLSVV 110



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>GLND_PSYAR (Q4FUP5) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 915

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 346 LNDHVVRRLEKVAAVRDGASARKAVSGSVQFPLWDDFRATKCGLVLF 206
           +ND + R LE+   +R   SAR  V   +   L+  F   K  L LF
Sbjct: 50  INDDISRALERGVNIRQLVSARACVIDDLLIGLFKWFELDKTDLALF 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,678,613
Number of Sequences: 219361
Number of extensions: 871132
Number of successful extensions: 3176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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