ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HBA1_ALDEL (P83131) Hemoglobin A alpha-1 subunit (Hemoglobin A a... 28 7.6
2FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor sup... 28 7.6

>HBA1_ALDEL (P83131) Hemoglobin A alpha-1 subunit (Hemoglobin A alpha-1 chain)|
          Length = 141

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 137 HMFNLS*DRHNLQSCNLCFILAQG-HHPVL 51
           H  NL  D  N +  NLCF++  G HHP +
Sbjct: 87  HAQNLRVDPVNFKLLNLCFVVVSGTHHPTI 116



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>FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor suppressor homolog|
            precursor
          Length = 4705

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 307  DADVDDHGNDECKNVHRCLQLPAAARGICP 396
            + DVD+  N  C N   C+  P + R ICP
Sbjct: 4241 EIDVDECENQPCGNGATCINEPGSFRCICP 4270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,366,491
Number of Sequences: 219361
Number of extensions: 1067697
Number of successful extensions: 2709
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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