ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2b21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY491431.1| Oryza sativa (japonica cultivar-group) transducin/WD-40 repeat protein mRNA, partial cds Length = 4484 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Minus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 4282 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 4227 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 4226 ccatataaacaaccacttgcccaggcag 4199 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 4022 cactttcgcgaccttctgcaagggaggctaatgaatcctgttttgtatcttacaaactgc 3963 Query: 567 a 567 | Sbjct: 3962 a 3962 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 3894 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 3843 Score = 50.1 bits (25), Expect = 0.011 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 408 acaacaatccaaatggggacggctatttacatttcagttaacctaggtatgattattggg 467 |||||||||||||| || | | ||||||||| || |||||||||| ||| |||||| || Sbjct: 4120 acaacaatccaaatagg-atgactatttacagtttggttaacctagttatcattatttgg 4062 Query: 468 gaagcctcc 476 ||||||||| Sbjct: 4061 gaagcctcc 4053
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Plus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 540447 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 540502 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 540503 ccatataaacaaccacttgcccaggcag 540530 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 540706 cactttcgcgaccttctgcaagggaggctaatgaatcctgttttgtatcttacaaactgc 540765 Query: 567 a 567 | Sbjct: 540766 a 540766 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 540834 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 540885 Score = 50.1 bits (25), Expect = 0.011 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 408 acaacaatccaaatggggacggctatttacatttcagttaacctaggtatgattattggg 467 |||||||||||||| || | | ||||||||| || |||||||||| ||| |||||| || Sbjct: 540608 acaacaatccaaatagg-atgactatttacagtttggttaacctagttatcattatttgg 540666 Query: 468 gaagcctcc 476 ||||||||| Sbjct: 540667 gaagcctcc 540675
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Plus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 462062 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 462117 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 462118 ccatataaacaaccacttgcccaggcag 462145 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 462315 cactttcgcgaccttctgcaagggaggctaatgaaccctgttttgtatcttacaaactgc 462374 Query: 567 a 567 | Sbjct: 462375 a 462375 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 462443 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 462494 Score = 42.1 bits (21), Expect = 2.6 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 363 caaacctttttacactttgggaaaggaag 391 |||||||||||||| |||||||||||||| Sbjct: 462182 caaacctttttaca-tttgggaaaggaag 462209
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Plus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 462062 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 462117 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 462118 ccatataaacaaccacttgcccaggcag 462145 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 462315 cactttcgcgaccttctgcaagggaggctaatgaaccctgttttgtatcttacaaactgc 462374 Query: 567 a 567 | Sbjct: 462375 a 462375 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 462443 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 462494 Score = 42.1 bits (21), Expect = 2.6 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 363 caaacctttttacactttgggaaaggaag 391 |||||||||||||| |||||||||||||| Sbjct: 462182 caaacctttttaca-tttgggaaaggaag 462209
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Plus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 540447 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 540502 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 540503 ccatataaacaaccacttgcccaggcag 540530 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 540706 cactttcgcgaccttctgcaagggaggctaatgaatcctgttttgtatcttacaaactgc 540765 Query: 567 a 567 | Sbjct: 540766 a 540766 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 540834 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 540885 Score = 50.1 bits (25), Expect = 0.011 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 408 acaacaatccaaatggggacggctatttacatttcagttaacctaggtatgattattggg 467 |||||||||||||| || | | ||||||||| || |||||||||| ||| |||||| || Sbjct: 540608 acaacaatccaaatagg-atgactatttacagtttggttaacctagttatcattatttgg 540666 Query: 468 gaagcctcc 476 ||||||||| Sbjct: 540667 gaagcctcc 540675
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Minus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 108396 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 108341 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 108340 ccatataaacaaccacttgcccaggcag 108313 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 108137 cactttcgcgaccttctgcaagggaggctaatgaatcctgttttgtatcttacaaactgc 108078 Query: 567 a 567 | Sbjct: 108077 a 108077 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 108009 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 107958 Score = 50.1 bits (25), Expect = 0.011 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 408 acaacaatccaaatggggacggctatttacatttcagttaacctaggtatgattattggg 467 |||||||||||||| || | | ||||||||| || |||||||||| ||| |||||| || Sbjct: 108235 acaacaatccaaatagg-atgactatttacagtttggttaacctagttatcattatttgg 108177 Query: 468 gaagcctcc 476 ||||||||| Sbjct: 108176 gaagcctcc 108168
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Minus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 108250 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 108195 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 108194 ccatataaacaaccacttgcccaggcag 108167 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 107997 cactttcgcgaccttctgcaagggaggctaatgaaccctgttttgtatcttacaaactgc 107938 Query: 567 a 567 | Sbjct: 107937 a 107937 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 107869 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 107818 Score = 42.1 bits (21), Expect = 2.6 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 363 caaacctttttacactttgggaaaggaag 391 |||||||||||||| |||||||||||||| Sbjct: 108130 caaacctttttaca-tttgggaaaggaag 108103
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 83.8 bits (42), Expect = 8e-13 Identities = 78/88 (88%), Gaps = 4/88 (4%) Strand = Plus / Minus Query: 249 gcatctatctattgaagaacatctgtgaggagacatgtgcatgcattctcccttcctggc 308 |||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| Sbjct: 6325 gcatctatctattgaacaacatctatgag-agacatgcgcatgcattctccctg---ggc 6270 Query: 309 ccatataaacaaccacttgaccgggcag 336 ||||||||||||||||||| || ||||| Sbjct: 6269 ccatataaacaaccacttgcccaggcag 6242 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 507 cactttcacaaccttctgcaagggaggctaatgaatcttgatttgtatcttacaaattgc 566 ||||||| | ||||||||||||||||||||||||||| || ||||||||||||||| ||| Sbjct: 6066 cactttcgcgaccttctgcaagggaggctaatgaatcctgttttgtatcttacaaactgc 6007 Query: 567 a 567 | Sbjct: 6006 a 6006 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/52 (90%), Gaps = 2/52 (3%) Strand = Plus / Minus Query: 634 caccaccatgtcactgaccaggcttt--gtatcatcttgtatcttgtagctg 683 |||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct: 5938 caccaccatgtcactgaccaggctctccataacatcttgtatcttgtagctg 5887 Score = 50.1 bits (25), Expect = 0.011 Identities = 59/69 (85%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 408 acaacaatccaaatggggacggctatttacatttcagttaacctaggtatgattattggg 467 |||||||||||||| || | | ||||||||| || |||||||||| ||| |||||| || Sbjct: 6164 acaacaatccaaatagg-atgactatttacagtttggttaacctagttatcattatttgg 6106 Query: 468 gaagcctcc 476 ||||||||| Sbjct: 6105 gaagcctcc 6097
>gb|AC130281.13| Mus musculus chromosome 3, clone RP23-372I17, complete sequence Length = 216261 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 ttatcttaagagaattaacta 85 ||||||||||||||||||||| Sbjct: 163099 ttatcttaagagaattaacta 163079
>gb|AC009835.14| Homo sapiens chromosome 18, clone RP11-413I9, complete sequence Length = 157979 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 586 agatgcccaacacaagcaata 606 ||||||||||||||||||||| Sbjct: 95349 agatgcccaacacaagcaata 95329
>gb|AC132439.4| Mus musculus BAC clone RP23-234H10 from 6, complete sequence Length = 190308 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 tttgtatcatcttgtatcttg 677 ||||||||||||||||||||| Sbjct: 189460 tttgtatcatcttgtatcttg 189480
>gb|AC153637.11| Mus musculus 6 BAC RP23-313A2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226751 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 tttgtatcatcttgtatcttg 677 ||||||||||||||||||||| Sbjct: 96804 tttgtatcatcttgtatcttg 96824 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,515,385 Number of Sequences: 3902068 Number of extensions: 7515385 Number of successful extensions: 148794 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 148559 Number of HSP's gapped (non-prelim): 199 length of query: 753 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 730 effective length of database: 17,143,297,704 effective search space: 12514607323920 effective search space used: 12514607323920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
