Clone Name | rbasd2b17 |
---|---|
Clone Library Name | barley_pub |
>emb|AL845512.9| Zebrafish DNA sequence from clone CH211-286M4 in linkage group 4 Contains the gene for a novel protein similar to mouse and human F-box protein 7 (FBXO7), the gene for a novel protein similar to human exportin tRNA (nuclear export receptor for tRNAs) (XPOT), the gene for a novel protein similar to parathyroid hormone-like hormone (PTHLH), the 3' end of a novel gene, a novel gene and two CpG islands, complete sequence Length = 192940 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 aatttatgtctctataatattt 146 |||||||||||||||||||||| Sbjct: 104504 aatttatgtctctataatattt 104483
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 22984460 ccggcgacgaacaccttcccgccgacggcg 22984431
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 159282 ccggcgacgaacaccttcccgccgacggcg 159253
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 50945 ccggcgacgaacaccttcccgccgacggcg 50916
>dbj|AK110986.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D04, full insert sequence Length = 1650 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 723 ccggcgacgaacaccttcccgccgacggcg 752
>dbj|AK072246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I15, full insert sequence Length = 1403 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 680 ccggcgacgaacaccttcccgccgacggcg 651
>dbj|AK065435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022O04, full insert sequence Length = 1455 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Minus Query: 539 ccggcgaagaactccttcccgccgacggcg 568 ||||||| |||| ||||||||||||||||| Sbjct: 679 ccggcgacgaacaccttcccgccgacggcg 650
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence Length = 157092 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 taatattttactagaaatgct 159 ||||||||||||||||||||| Sbjct: 32964 taatattttactagaaatgct 32944
>gb|AY480051.1| Homo sapiens plectin 11 mRNA, complete cds Length = 14797 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7938 ctcctccaggagctgcagctgctca 7914
>gb|AY480050.1| Homo sapiens plectin 10 mRNA, complete cds Length = 14689 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7830 ctcctccaggagctgcagctgctca 7806
>gb|AY480049.1| Homo sapiens plectin 8 mRNA, complete cds Length = 14675 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7816 ctcctccaggagctgcagctgctca 7792
>gb|AY480048.1| Homo sapiens plectin 7 mRNA, complete cds Length = 14646 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7787 ctcctccaggagctgcagctgctca 7763
>gb|AY480047.1| Homo sapiens plectin 6 mRNA, complete cds Length = 15249 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 8390 ctcctccaggagctgcagctgctca 8366
>gb|AY480046.1| Homo sapiens plectin 3 mRNA, complete cds Length = 14751 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7892 ctcctccaggagctgcagctgctca 7868
>gb|AY480045.1| Homo sapiens plectin 2 mRNA, complete cds Length = 14626 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7767 ctcctccaggagctgcagctgctca 7743
>gb|AY480044.1| Homo sapiens plectin 1 mRNA, complete cds Length = 14755 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7896 ctcctccaggagctgcagctgctca 7872
>emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in linkage group 1, complete sequence Length = 147811 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 aaacaagcagatttaattgaa 289 ||||||||||||||||||||| Sbjct: 33984 aaacaagcagatttaattgaa 33964
>ref|NM_000445.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 1, mRNA Length = 14755 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7896 ctcctccaggagctgcagctgctca 7872
>ref|NM_201378.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 2, mRNA Length = 14626 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7767 ctcctccaggagctgcagctgctca 7743
>ref|NM_201379.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 3, mRNA Length = 14751 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7892 ctcctccaggagctgcagctgctca 7868
>ref|NM_201380.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 6, mRNA Length = 15249 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 8390 ctcctccaggagctgcagctgctca 8366
>ref|NM_201381.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 7, mRNA Length = 14646 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7787 ctcctccaggagctgcagctgctca 7763
>ref|NM_201383.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 10, mRNA Length = 14689 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7830 ctcctccaggagctgcagctgctca 7806
>ref|NM_201382.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 8, mRNA Length = 14675 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7816 ctcctccaggagctgcagctgctca 7792
>ref|NM_201384.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa (PLEC1), transcript variant 11, mRNA Length = 14797 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7938 ctcctccaggagctgcagctgctca 7914
>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence Length = 185183 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 atattttactagaaatgcttataat 165 ||||| ||||||||||||||||||| Sbjct: 108463 atattctactagaaatgcttataat 108439
>gb|AC004901.1| Homo sapiens PAC clone RP5-817I18 from 7, complete sequence Length = 80288 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 atattttactagaaatgcttataat 165 ||||| ||||||||||||||||||| Sbjct: 3119 atattctactagaaatgcttataat 3143
>emb|Z92974.1|TTBCSOPRN T.thermosaccharolyticum BCS operon DNA Length = 8395 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 attttactagaaatgcttata 163 ||||||||||||||||||||| Sbjct: 7265 attttactagaaatgcttata 7285
>emb|Z82038.1|CTZ82038 C.thermosaccharolyticum etfB, etfA, hbd, thlA and actA genes Length = 6202 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 attttactagaaatgcttata 163 ||||||||||||||||||||| Sbjct: 5072 attttactagaaatgcttata 5092
>gb|AC109322.16| Homo sapiens chromosome 8, clone CTD-3065J16, complete sequence Length = 215342 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 149883 ctcctccaggagctgcagctgctca 149859
>gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, complete sequence Length = 177444 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 atttatgtctctataatattt 146 ||||||||||||||||||||| Sbjct: 86886 atttatgtctctataatattt 86906
>emb|Z54367.1|HSPLECTIN H.sapiens gene for plectin Length = 14189 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 8220 ctcctccaggagctgcagctgctca 8196
>gb|U53204.1|HSU53204 Human plectin (PLEC1) mRNA, complete cds Length = 14800 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 7941 ctcctccaggagctgcagctgctca 7917
>gb|U63610.1|HSPLEC1S3 Human plectin (PLEC1) gene, exons 3-32, and complete cds Length = 22693 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 ctcctccaggacctgcagctgctca 598 ||||||||||| ||||||||||||| Sbjct: 15775 ctcctccaggagctgcagctgctca 15751
>gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence Length = 173295 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 taatattttactagaaatgct 159 ||||||||||||||||||||| Sbjct: 119301 taatattttactagaaatgct 119281
>emb|Z69031.1|CTACTAGEN C.thermosaccharolyticum actA gene Length = 1857 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 attttactagaaatgcttata 163 ||||||||||||||||||||| Sbjct: 1154 attttactagaaatgcttata 1174
>gb|AE017308.1| Mycoplasma mobile 163K complete genome Length = 777079 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 caagcaattttaacttcatcttat 234 ||||||||||||||||||| |||| Sbjct: 257537 caagcaattttaacttcattttat 257560
>ref|XM_957693.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL PRECURSOR (E2) (PDC-E2) (MRP3) (NCU07659.1) partial mRNA Length = 1377 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 cgagcccaacgctctccccg 541 |||||||||||||||||||| Sbjct: 522 cgagcccaacgctctccccg 541
>ref|XM_328364.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL PRECURSOR (E2) (PDC-E2) (MRP3) (NCU07659.1) partial mRNA Length = 1377 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 cgagcccaacgctctccccg 541 |||||||||||||||||||| Sbjct: 522 cgagcccaacgctctccccg 541
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gatccttcaccggcggcgag 400 |||||||||||||||||||| Sbjct: 10412013 gatccttcaccggcggcgag 10412032
>ref|XM_536669.2| PREDICTED: Canis familiaris similar to myosin phosphatase-Rho interacting protein isoform 2 (LOC479530), mRNA Length = 7594 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tcagcctctccactggcggc 376 |||||||||||||||||||| Sbjct: 5645 tcagcctctccactggcggc 5626
>gb|AE004377.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 34 of 93 of the complete chromosome Length = 10417 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 tctgctgaaatctggcttgaattt 129 ||||||||||||||| |||||||| Sbjct: 848 tctgctgaaatctgggttgaattt 825
>emb|BX950872.7| Zebrafish DNA sequence from clone CH211-130M23 in linkage group 5, complete sequence Length = 141660 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 acaaacaagcagatttaatt 286 |||||||||||||||||||| Sbjct: 1097 acaaacaagcagatttaatt 1116
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 gtgaaccacttccaaatcgg 663 |||||||||||||||||||| Sbjct: 64219 gtgaaccacttccaaatcgg 64200
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gatccttcaccggcggcgag 400 |||||||||||||||||||| Sbjct: 68566 gatccttcaccggcggcgag 68585
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcacgccgacgatctcctcg 478 |||||||||||||||||||| Sbjct: 95057 tcacgccgacgatctcctcg 95076
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcacgccgacgatctcctcg 478 |||||||||||||||||||| Sbjct: 99021 tcacgccgacgatctcctcg 99040
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcacgccgacgatctcctcg 478 |||||||||||||||||||| Sbjct: 290926 tcacgccgacgatctcctcg 290945
>emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 in linkage group 10, complete sequence Length = 151591 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 atacaagcaattttaacttcatct 231 ||||||||||||| |||||||||| Sbjct: 80277 atacaagcaatttgaacttcatct 80254
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gatccttcaccggcggcgag 400 |||||||||||||||||||| Sbjct: 125479 gatccttcaccggcggcgag 125498
>emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 in linkage group 14, complete sequence Length = 168697 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ataatattttactagaaatg 157 |||||||||||||||||||| Sbjct: 131715 ataatattttactagaaatg 131734
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence Length = 120017 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tatgtctctataatatttta 148 |||||||||||||||||||| Sbjct: 100759 tatgtctctataatatttta 100778
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cacgccgacgatctcctcgt 479 |||||||||||||||||||| Sbjct: 17696 cacgccgacgatctcctcgt 17715
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tggtggaagtgctaatgaca 62 |||||||||||||||||||| Sbjct: 23650 tggtggaagtgctaatgaca 23669
>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence Length = 175579 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tggtggaagtgctaatgaca 62 |||||||||||||||||||| Sbjct: 110783 tggtggaagtgctaatgaca 110802
>emb|BX072533.17| Zebrafish DNA sequence from clone CH211-158C3 in linkage group 15, complete sequence Length = 183704 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ataatattttactagaaatg 157 |||||||||||||||||||| Sbjct: 45125 ataatattttactagaaatg 45106
>gb|AC128966.4| Rattus norvegicus BAC CH230-194D11 (Children's Hospital Oakland Research Institute) complete sequence Length = 214096 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttttaacttcatcttatacg 237 |||||||||||||||||||| Sbjct: 29021 ttttaacttcatcttatacg 29002
>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete sequence Length = 178904 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 tttggtttctgctgaaatctggct 122 |||||||||||||||| ||||||| Sbjct: 24807 tttggtttctgctgaactctggct 24830
>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete sequence Length = 214415 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 caagatgaagaataaaaggaggcc 24 |||||| ||||||||||||||||| Sbjct: 42671 caagatcaagaataaaaggaggcc 42648
>emb|AL929509.15| Zebrafish DNA sequence from clone CH211-165I22 in linkage group 1, complete sequence Length = 139628 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ataatattttactagaaatg 157 |||||||||||||||||||| Sbjct: 94948 ataatattttactagaaatg 94929
>emb|CR318622.1| Zebrafish DNA sequence from clone DKEY-251O17 in linkage group 5, complete sequence Length = 54773 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 acaaacaagcagatttaatt 286 |||||||||||||||||||| Sbjct: 1097 acaaacaagcagatttaatt 1116
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 gtgaaccacttccaaatcgg 663 |||||||||||||||||||| Sbjct: 1168413 gtgaaccacttccaaatcgg 1168394
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gatccttcaccggcggcgag 400 |||||||||||||||||||| Sbjct: 10410114 gatccttcaccggcggcgag 10410133
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 cctccaggacctgcagctgc 595 |||||||||||||||||||| Sbjct: 2993296 cctccaggacctgcagctgc 2993277
>emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, complete sequence Length = 167004 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ataatattttactagaaatg 157 |||||||||||||||||||| Sbjct: 141738 ataatattttactagaaatg 141719
>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full insert sequence Length = 1650 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gatccttcaccggcggcgag 400 |||||||||||||||||||| Sbjct: 1226 gatccttcaccggcggcgag 1245
>gb|AC144690.3| Didelphis virginiana clone LB3-234D12, complete sequence Length = 164830 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aatattttactagaaatgct 159 |||||||||||||||||||| Sbjct: 9729 aatattttactagaaatgct 9710
>emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in linkage group 19, complete sequence Length = 190702 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 gtttctgctgaaatctggcttgaa 126 |||| ||||||||||||||||||| Sbjct: 181536 gtttatgctgaaatctggcttgaa 181559
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 644 gtgaaccacttccaaatcgg 663 |||||||||||||||||||| Sbjct: 1166134 gtgaaccacttccaaatcgg 1166115
>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete sequences Length = 172173 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 tttggtttctgctgaaatctggct 122 |||||||||||||||| ||||||| Sbjct: 47772 tttggtttctgctgaactctggct 47749
>emb|AL845303.11| Zebrafish DNA sequence from clone CH211-146K13 in linkage group 1, complete sequence Length = 54016 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 atacaagcaattttaacttcatct 231 ||||||||||||| |||||||||| Sbjct: 37680 atacaagcaatttgaacttcatct 37657
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aatattttactagaaatgct 159 |||||||||||||||||||| Sbjct: 422178 aatattttactagaaatgct 422159
>gb|J04432.1|NEURPNUC Neurospora crassa nuclear-encoded mitochondrial protein gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 cgagcccaacgctctccccg 541 |||||||||||||||||||| Sbjct: 1127 cgagcccaacgctctccccg 1146 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,655,234 Number of Sequences: 3902068 Number of extensions: 5655234 Number of successful extensions: 124009 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123521 Number of HSP's gapped (non-prelim): 488 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)