ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL845512.9| Zebrafish DNA sequence from clone CH211-286M4 in... 44 0.61
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
3dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
4dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
5dbj|AK110986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.61
6dbj|AK072246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.61
7dbj|AK065435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.61
8gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, comple... 42 2.4
9gb|AY480051.1| Homo sapiens plectin 11 mRNA, complete cds 42 2.4
10gb|AY480050.1| Homo sapiens plectin 10 mRNA, complete cds 42 2.4
11gb|AY480049.1| Homo sapiens plectin 8 mRNA, complete cds 42 2.4
12gb|AY480048.1| Homo sapiens plectin 7 mRNA, complete cds 42 2.4
13gb|AY480047.1| Homo sapiens plectin 6 mRNA, complete cds 42 2.4
14gb|AY480046.1| Homo sapiens plectin 3 mRNA, complete cds 42 2.4
15gb|AY480045.1| Homo sapiens plectin 2 mRNA, complete cds 42 2.4
16gb|AY480044.1| Homo sapiens plectin 1 mRNA, complete cds 42 2.4
17emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in... 42 2.4
18ref|NM_000445.2| Homo sapiens plectin 1, intermediate filament b... 42 2.4
19ref|NM_201378.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
20ref|NM_201379.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
21ref|NM_201380.2| Homo sapiens plectin 1, intermediate filament b... 42 2.4
22ref|NM_201381.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
23ref|NM_201383.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
24ref|NM_201382.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
25ref|NM_201384.1| Homo sapiens plectin 1, intermediate filament b... 42 2.4
26gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 42 2.4
27gb|AC004901.1| Homo sapiens PAC clone RP5-817I18 from 7, complet... 42 2.4
28emb|Z92974.1|TTBCSOPRN T.thermosaccharolyticum BCS operon DNA 42 2.4
29emb|Z82038.1|CTZ82038 C.thermosaccharolyticum etfB, etfA, hbd, t... 42 2.4
30gb|AC109322.16| Homo sapiens chromosome 8, clone CTD-3065J16, co... 42 2.4
31gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, compl... 42 2.4
32emb|Z54367.1|HSPLECTIN H.sapiens gene for plectin 42 2.4
33gb|U53204.1|HSU53204 Human plectin (PLEC1) mRNA, complete cds 42 2.4
34gb|U63610.1|HSPLEC1S3 Human plectin (PLEC1) gene, exons 3-32, an... 42 2.4
35gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence 42 2.4
36emb|Z69031.1|CTACTAGEN C.thermosaccharolyticum actA gene 42 2.4
37gb|AE017308.1| Mycoplasma mobile 163K complete genome 40 9.6
38ref|XM_957693.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYL... 40 9.6
39ref|XM_328364.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYL... 40 9.6
40gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.6
41ref|XM_536669.2| PREDICTED: Canis familiaris similar to myosin p... 40 9.6
42gb|AE004377.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.6
43emb|BX950872.7| Zebrafish DNA sequence from clone CH211-130M23 i... 40 9.6
44gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
45gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
46emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 40 9.6
47emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 40 9.6
48emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 9.6
49emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 i... 40 9.6
50gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 9.6
51emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 i... 40 9.6
52gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete ... 40 9.6
53gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 9.6
54gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c... 40 9.6
55gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, com... 40 9.6
56emb|BX072533.17| Zebrafish DNA sequence from clone CH211-158C3 i... 40 9.6
57gb|AC128966.4| Rattus norvegicus BAC CH230-194D11 (Children's H... 40 9.6
58gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosom... 40 9.6
59gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map ... 40 9.6
60emb|AL929509.15| Zebrafish DNA sequence from clone CH211-165I22 ... 40 9.6
61emb|CR318622.1| Zebrafish DNA sequence from clone DKEY-251O17 in... 40 9.6
62dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
63dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
64dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 9.6
65emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, c... 40 9.6
66dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
67gb|AC144690.3| Didelphis virginiana clone LB3-234D12, complete s... 40 9.6
68emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in... 40 9.6
69gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
70dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 9.6
71emb|AL845303.11| Zebrafish DNA sequence from clone CH211-146K13 ... 40 9.6
72gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 40 9.6
73gb|J04432.1|NEURPNUC Neurospora crassa nuclear-encoded mitochond... 40 9.6 
>emb|AL845512.9| Zebrafish DNA sequence from clone CH211-286M4 in linkage group 4 Contains
              the gene for a novel protein similar to mouse and human
              F-box protein 7  (FBXO7), the gene for a novel protein
              similar to human exportin tRNA (nuclear export receptor for
              tRNAs) (XPOT), the gene for a novel protein similar to
              parathyroid hormone-like hormone (PTHLH), the 3' end of a
              novel gene, a novel gene and two CpG islands, complete
              sequence
          Length = 192940

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 125    aatttatgtctctataatattt 146
              ||||||||||||||||||||||
Sbjct: 104504 aatttatgtctctataatattt 104483
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 539      ccggcgaagaactccttcccgccgacggcg 568
                ||||||| |||| |||||||||||||||||
Sbjct: 22984460 ccggcgacgaacaccttcccgccgacggcg 22984431
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>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502H06
          Length = 165630

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 539    ccggcgaagaactccttcccgccgacggcg 568
              ||||||| |||| |||||||||||||||||
Sbjct: 159282 ccggcgacgaacaccttcccgccgacggcg 159253
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0652A05
          Length = 150455

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 539   ccggcgaagaactccttcccgccgacggcg 568
             ||||||| |||| |||||||||||||||||
Sbjct: 50945 ccggcgacgaacaccttcccgccgacggcg 50916
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>dbj|AK110986.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D04, full
           insert sequence
          Length = 1650

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 539 ccggcgaagaactccttcccgccgacggcg 568
           ||||||| |||| |||||||||||||||||
Sbjct: 723 ccggcgacgaacaccttcccgccgacggcg 752
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>dbj|AK072246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I15, full
           insert sequence
          Length = 1403

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 539 ccggcgaagaactccttcccgccgacggcg 568
           ||||||| |||| |||||||||||||||||
Sbjct: 680 ccggcgacgaacaccttcccgccgacggcg 651
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>dbj|AK065435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022O04, full
           insert sequence
          Length = 1455

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 539 ccggcgaagaactccttcccgccgacggcg 568
           ||||||| |||| |||||||||||||||||
Sbjct: 679 ccggcgacgaacaccttcccgccgacggcg 650
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>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence
          Length = 157092

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   taatattttactagaaatgct 159
             |||||||||||||||||||||
Sbjct: 32964 taatattttactagaaatgct 32944
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>gb|AY480051.1| Homo sapiens plectin 11 mRNA, complete cds
          Length = 14797

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7938 ctcctccaggagctgcagctgctca 7914
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>gb|AY480050.1| Homo sapiens plectin 10 mRNA, complete cds
          Length = 14689

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7830 ctcctccaggagctgcagctgctca 7806
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>gb|AY480049.1| Homo sapiens plectin 8 mRNA, complete cds
          Length = 14675

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7816 ctcctccaggagctgcagctgctca 7792
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>gb|AY480048.1| Homo sapiens plectin 7 mRNA, complete cds
          Length = 14646

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7787 ctcctccaggagctgcagctgctca 7763
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>gb|AY480047.1| Homo sapiens plectin 6 mRNA, complete cds
          Length = 15249

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 8390 ctcctccaggagctgcagctgctca 8366
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>gb|AY480046.1| Homo sapiens plectin 3 mRNA, complete cds
          Length = 14751

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7892 ctcctccaggagctgcagctgctca 7868
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>gb|AY480045.1| Homo sapiens plectin 2 mRNA, complete cds
          Length = 14626

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7767 ctcctccaggagctgcagctgctca 7743
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>gb|AY480044.1| Homo sapiens plectin 1 mRNA, complete cds
          Length = 14755

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7896 ctcctccaggagctgcagctgctca 7872
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>emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in linkage group 1,
             complete sequence
          Length = 147811

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   aaacaagcagatttaattgaa 289
             |||||||||||||||||||||
Sbjct: 33984 aaacaagcagatttaattgaa 33964
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>ref|NM_000445.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 1, mRNA
          Length = 14755

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7896 ctcctccaggagctgcagctgctca 7872
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>ref|NM_201378.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 2, mRNA
          Length = 14626

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7767 ctcctccaggagctgcagctgctca 7743
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>ref|NM_201379.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 3, mRNA
          Length = 14751

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7892 ctcctccaggagctgcagctgctca 7868
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>ref|NM_201380.2| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 6, mRNA
          Length = 15249

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 8390 ctcctccaggagctgcagctgctca 8366
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>ref|NM_201381.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 7, mRNA
          Length = 14646

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7787 ctcctccaggagctgcagctgctca 7763
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>ref|NM_201383.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 10, mRNA
          Length = 14689

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7830 ctcctccaggagctgcagctgctca 7806
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>ref|NM_201382.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 8, mRNA
          Length = 14675

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7816 ctcctccaggagctgcagctgctca 7792
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>ref|NM_201384.1| Homo sapiens plectin 1, intermediate filament binding protein 500kDa
            (PLEC1), transcript variant 11, mRNA
          Length = 14797

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7938 ctcctccaggagctgcagctgctca 7914
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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 141    atattttactagaaatgcttataat 165
              ||||| |||||||||||||||||||
Sbjct: 108463 atattctactagaaatgcttataat 108439
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>gb|AC004901.1| Homo sapiens PAC clone RP5-817I18 from 7, complete sequence
          Length = 80288

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 141  atattttactagaaatgcttataat 165
            ||||| |||||||||||||||||||
Sbjct: 3119 atattctactagaaatgcttataat 3143
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>emb|Z92974.1|TTBCSOPRN T.thermosaccharolyticum BCS operon DNA
          Length = 8395

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  attttactagaaatgcttata 163
            |||||||||||||||||||||
Sbjct: 7265 attttactagaaatgcttata 7285
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>emb|Z82038.1|CTZ82038 C.thermosaccharolyticum etfB, etfA, hbd, thlA and actA genes
          Length = 6202

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  attttactagaaatgcttata 163
            |||||||||||||||||||||
Sbjct: 5072 attttactagaaatgcttata 5092
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>gb|AC109322.16| Homo sapiens chromosome 8, clone CTD-3065J16, complete sequence
          Length = 215342

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 574    ctcctccaggacctgcagctgctca 598
              ||||||||||| |||||||||||||
Sbjct: 149883 ctcctccaggagctgcagctgctca 149859
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>gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, complete sequence
          Length = 177444

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   atttatgtctctataatattt 146
             |||||||||||||||||||||
Sbjct: 86886 atttatgtctctataatattt 86906
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>emb|Z54367.1|HSPLECTIN H.sapiens gene for plectin
          Length = 14189

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 8220 ctcctccaggagctgcagctgctca 8196
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>gb|U53204.1|HSU53204 Human plectin (PLEC1) mRNA, complete cds
          Length = 14800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 574  ctcctccaggacctgcagctgctca 598
            ||||||||||| |||||||||||||
Sbjct: 7941 ctcctccaggagctgcagctgctca 7917
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>gb|U63610.1|HSPLEC1S3 Human plectin (PLEC1) gene, exons 3-32, and complete cds
          Length = 22693

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 574   ctcctccaggacctgcagctgctca 598
             ||||||||||| |||||||||||||
Sbjct: 15775 ctcctccaggagctgcagctgctca 15751
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>gb|AC099744.3| Papio anubis clone RP41-65E12, complete sequence
          Length = 173295

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    taatattttactagaaatgct 159
              |||||||||||||||||||||
Sbjct: 119301 taatattttactagaaatgct 119281
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>emb|Z69031.1|CTACTAGEN C.thermosaccharolyticum actA gene
          Length = 1857

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 143  attttactagaaatgcttata 163
            |||||||||||||||||||||
Sbjct: 1154 attttactagaaatgcttata 1174
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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    caagcaattttaacttcatcttat 234
              ||||||||||||||||||| ||||
Sbjct: 257537 caagcaattttaacttcattttat 257560
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>ref|XM_957693.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYLTRANSFERASE
           COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX,
           MITOCHONDRIAL PRECURSOR (E2) (PDC-E2) (MRP3)
           (NCU07659.1) partial mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 522 cgagcccaacgctctccccg 541
           ||||||||||||||||||||
Sbjct: 522 cgagcccaacgctctccccg 541
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>ref|XM_328364.1| Neurospora crassa OR74A DIHYDROLIPOAMIDE ACETYLTRANSFERASE
           COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX,
           MITOCHONDRIAL PRECURSOR (E2) (PDC-E2) (MRP3)
           (NCU07659.1) partial mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 522 cgagcccaacgctctccccg 541
           ||||||||||||||||||||
Sbjct: 522 cgagcccaacgctctccccg 541
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 381      gatccttcaccggcggcgag 400
                ||||||||||||||||||||
Sbjct: 10412013 gatccttcaccggcggcgag 10412032
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>ref|XM_536669.2| PREDICTED: Canis familiaris similar to myosin phosphatase-Rho
            interacting protein isoform 2 (LOC479530), mRNA
          Length = 7594

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 357  tcagcctctccactggcggc 376
            ||||||||||||||||||||
Sbjct: 5645 tcagcctctccactggcggc 5626
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>gb|AE004377.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section
           34 of 93 of the complete chromosome
          Length = 10417

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 106 tctgctgaaatctggcttgaattt 129
           ||||||||||||||| ||||||||
Sbjct: 848 tctgctgaaatctgggttgaattt 825
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>emb|BX950872.7| Zebrafish DNA sequence from clone CH211-130M23 in linkage group 5,
            complete sequence
          Length = 141660

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  acaaacaagcagatttaatt 286
            ||||||||||||||||||||
Sbjct: 1097 acaaacaagcagatttaatt 1116
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>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0017B18, complete sequence
          Length = 150279

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 644   gtgaaccacttccaaatcgg 663
             ||||||||||||||||||||
Sbjct: 64219 gtgaaccacttccaaatcgg 64200
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   gatccttcaccggcggcgag 400
             ||||||||||||||||||||
Sbjct: 68566 gatccttcaccggcggcgag 68585
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tcacgccgacgatctcctcg 478
             ||||||||||||||||||||
Sbjct: 95057 tcacgccgacgatctcctcg 95076
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tcacgccgacgatctcctcg 478
             ||||||||||||||||||||
Sbjct: 99021 tcacgccgacgatctcctcg 99040
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    tcacgccgacgatctcctcg 478
              ||||||||||||||||||||
Sbjct: 290926 tcacgccgacgatctcctcg 290945
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>emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 in linkage group 10,
             complete sequence
          Length = 151591

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atacaagcaattttaacttcatct 231
             ||||||||||||| ||||||||||
Sbjct: 80277 atacaagcaatttgaacttcatct 80254
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    gatccttcaccggcggcgag 400
              ||||||||||||||||||||
Sbjct: 125479 gatccttcaccggcggcgag 125498
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>emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 in linkage group 14,
              complete sequence
          Length = 168697

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    ataatattttactagaaatg 157
              ||||||||||||||||||||
Sbjct: 131715 ataatattttactagaaatg 131734
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>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
          Length = 120017

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    tatgtctctataatatttta 148
              ||||||||||||||||||||
Sbjct: 100759 tatgtctctataatatttta 100778
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   cacgccgacgatctcctcgt 479
             ||||||||||||||||||||
Sbjct: 17696 cacgccgacgatctcctcgt 17715
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>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tggtggaagtgctaatgaca 62
             ||||||||||||||||||||
Sbjct: 23650 tggtggaagtgctaatgaca 23669
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>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence
          Length = 175579

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tggtggaagtgctaatgaca 62
              ||||||||||||||||||||
Sbjct: 110783 tggtggaagtgctaatgaca 110802
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>emb|BX072533.17| Zebrafish DNA sequence from clone CH211-158C3 in linkage group 15,
             complete sequence
          Length = 183704

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ataatattttactagaaatg 157
             ||||||||||||||||||||
Sbjct: 45125 ataatattttactagaaatg 45106
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>gb|AC128966.4| Rattus norvegicus  BAC CH230-194D11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 214096

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   ttttaacttcatcttatacg 237
             ||||||||||||||||||||
Sbjct: 29021 ttttaacttcatcttatacg 29002
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>gb|AC154691.3| Mus musculus BAC clone RP24-336F24 from chromosome 16, complete
             sequence
          Length = 178904

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    tttggtttctgctgaaatctggct 122
             |||||||||||||||| |||||||
Sbjct: 24807 tttggtttctgctgaactctggct 24830
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>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete
             sequence
          Length = 214415

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     caagatgaagaataaaaggaggcc 24
             |||||| |||||||||||||||||
Sbjct: 42671 caagatcaagaataaaaggaggcc 42648
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>emb|AL929509.15| Zebrafish DNA sequence from clone CH211-165I22 in linkage group 1,
             complete sequence
          Length = 139628

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ataatattttactagaaatg 157
             ||||||||||||||||||||
Sbjct: 94948 ataatattttactagaaatg 94929
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>emb|CR318622.1| Zebrafish DNA sequence from clone DKEY-251O17 in linkage group 5,
            complete sequence
          Length = 54773

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  acaaacaagcagatttaatt 286
            ||||||||||||||||||||
Sbjct: 1097 acaaacaagcagatttaatt 1116
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 644     gtgaaccacttccaaatcgg 663
               ||||||||||||||||||||
Sbjct: 1168413 gtgaaccacttccaaatcgg 1168394
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 381      gatccttcaccggcggcgag 400
                ||||||||||||||||||||
Sbjct: 10410114 gatccttcaccggcggcgag 10410133
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 576     cctccaggacctgcagctgc 595
               ||||||||||||||||||||
Sbjct: 2993296 cctccaggacctgcagctgc 2993277
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>emb|AL954840.16| Zebrafish DNA sequence from clone DKEY-29K19, complete sequence
          Length = 167004

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    ataatattttactagaaatg 157
              ||||||||||||||||||||
Sbjct: 141738 ataatattttactagaaatg 141719
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>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  gatccttcaccggcggcgag 400
            ||||||||||||||||||||
Sbjct: 1226 gatccttcaccggcggcgag 1245
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>gb|AC144690.3| Didelphis virginiana clone LB3-234D12, complete sequence
          Length = 164830

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  aatattttactagaaatgct 159
            ||||||||||||||||||||
Sbjct: 9729 aatattttactagaaatgct 9710
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>emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in linkage group 19,
              complete sequence
          Length = 190702

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    gtttctgctgaaatctggcttgaa 126
              |||| |||||||||||||||||||
Sbjct: 181536 gtttatgctgaaatctggcttgaa 181559
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 644     gtgaaccacttccaaatcgg 663
               ||||||||||||||||||||
Sbjct: 1166134 gtgaaccacttccaaatcgg 1166115
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>dbj|AP003148.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-190J24, complete
             sequences
          Length = 172173

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    tttggtttctgctgaaatctggct 122
             |||||||||||||||| |||||||
Sbjct: 47772 tttggtttctgctgaactctggct 47749
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>emb|AL845303.11| Zebrafish DNA sequence from clone CH211-146K13 in linkage group 1,
             complete sequence
          Length = 54016

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   atacaagcaattttaacttcatct 231
             ||||||||||||| ||||||||||
Sbjct: 37680 atacaagcaatttgaacttcatct 37657
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    aatattttactagaaatgct 159
              ||||||||||||||||||||
Sbjct: 422178 aatattttactagaaatgct 422159
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>gb|J04432.1|NEURPNUC Neurospora crassa nuclear-encoded mitochondrial protein gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 522  cgagcccaacgctctccccg 541
            ||||||||||||||||||||
Sbjct: 1127 cgagcccaacgctctccccg 1146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,655,234
Number of Sequences: 3902068
Number of extensions: 5655234
Number of successful extensions: 124009
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123521
Number of HSP's gapped (non-prelim): 488
length of query: 700
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 677
effective length of database: 17,143,297,704
effective search space: 11606012545608
effective search space used: 11606012545608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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