ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1583_PASMU (Q9CKM8) Hypothetical protein PM1583 precursor 30 2.0
2C11B1_RAT (P15393) Cytochrome P450 11B1, mitochondrial precursor... 29 2.6
3RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial prec... 28 7.5
4YDA6_SCHPO (Q10348) Putative endonuclease C1F12.06c (EC 3.1.-.-) 27 9.9

>Y1583_PASMU (Q9CKM8) Hypothetical protein PM1583 precursor|
          Length = 204

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 185 EKLSYHCATKDIVINVRREYDL 250
           E++S +C TKD +IN R  YD+
Sbjct: 94  ERVSTNCKTKDTIINTRTRYDV 115



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>C11B1_RAT (P15393) Cytochrome P450 11B1, mitochondrial precursor (EC|
           1.14.15.4) (CYPXIB1) (P450C11) (Steroid
           11-beta-hydroxylase) (P450(11 beta)-DS)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -3

Query: 265 HNXLPEIILTTHVDHNVLCSAMIGQFL------WTSTYVWNE 158
           H+  PE +  TH  H++  S     FL      WTST VW E
Sbjct: 214 HDLKPESVTFTHALHSMFKSTTQLMFLPKSLTRWTSTRVWKE 255



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>RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial precursor (YmL4)|
           (MRP-L4)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 310 IWLGCLGETSNMNNKHNXLPEIILTTHVDHNVLCSAMIGQFLWTSTYVWNE 158
           +W  CL E + +  +++ L  I+ +TH + + L S  I   +W   +V NE
Sbjct: 109 LWYNCLREQNVLARENHLLKNIVGSTHDEFSEL-SNSIRTTMWQIRHVLNE 158



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>YDA6_SCHPO (Q10348) Putative endonuclease C1F12.06c (EC 3.1.-.-)|
          Length = 252

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -3

Query: 307 WLGCLGETSNMNNKHNXLPEIILTTHVDHNVL------CSAMIGQFLWTST 173
           +L C+G T +++     L + +L    DH +L       S ++G  +WTS+
Sbjct: 145 YLHCVGLTESLDAHRETLKKHVLKKTTDHPILIHSIDQSSEILGAAVWTSS 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,636,943
Number of Sequences: 219361
Number of extensions: 685356
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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