ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 42 0.37
2gb|AE014075.1| Escherichia coli CFT073, complete genome 42 0.37
3gb|CP000243.1| Escherichia coli UTI89, complete genome 42 0.37
4gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 42 0.37
5dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 42 0.37
6gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 42 0.37
7gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 42 0.37
8gb|U29581.1|ECU29581 Escherichia coli K-12 genome; approximately... 42 0.37
9dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 42 0.37
10gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 42 0.37
11gb|CP000036.1| Shigella boydii Sb227, complete genome 42 0.37
12gb|CP000038.1| Shigella sonnei Ss046, complete genome 42 0.37
13gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosom... 40 1.5
14emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chr... 40 1.5
15emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chro... 40 1.5
16gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, compl... 40 1.5
17gb|AC018467.9| Homo sapiens BAC clone RP11-398J17 from 2, comple... 40 1.5
18dbj|AP003041.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 1.5
19dbj|AP003326.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 1.5
20gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 38 5.8
21gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, com... 38 5.8
22gb|AC163398.5| Mus musculus chromosome 18, clone RP24-376O5, com... 38 5.8
23gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, com... 38 5.8
24gb|AC129542.9| Mus musculus chromosome 1, clone RP23-249L15, com... 38 5.8
25gb|AC146650.13| Medicago truncatula clone mth2-14j5, complete se... 38 5.8
26gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete s... 38 5.8
27emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chro... 38 5.8
28emb|AL355522.11| Human DNA sequence from clone RP11-546O15 on ch... 38 5.8
29gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence 38 5.8
30emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 38 5.8
31emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chro... 38 5.8
32gb|BC097982.1| Rattus norvegicus cDNA clone IMAGE:7443440, parti... 38 5.8
33gb|AC022740.4|AC022740 Homo sapiens chromosome 15, clone RP11-61... 38 5.8
34emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chr... 38 5.8
35gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B... 38 5.8
36gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11-66F2... 38 5.8
37emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in... 38 5.8
38gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 38 5.8
39emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chr... 38 5.8
40emb|AL593855.9| Mouse DNA sequence from clone RP23-329H3 on chro... 38 5.8 
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2882509 ctggttgatggaagaagcggt 2882489
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 3198326 ctggttgatggaagaagcggt 3198306
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 3077964 ctggttgatggaagaagcggt 3077944
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2921531 ctggttgatggaagaagcggt 2921511
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2922165 ctggttgatggaagaagcggt 2922145
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2877198 ctggttgatggaagaagcggt 2877178
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 3713207 ctggttgatggaagaagcggt 3713187
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>gb|U29581.1|ECU29581 Escherichia coli K-12 genome; approximately 63 to 64 minutes
          Length = 71128

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 79   ctggttgatggaagaagcggt 99
            |||||||||||||||||||||
Sbjct: 5064 ctggttgatggaagaagcggt 5044
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 3645909 ctggttgatggaagaagcggt 3645889
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2779472 ctggttgatggaagaagcggt 2779452
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 2680207 ctggttgatggaagaagcggt 2680187
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      ctggttgatggaagaagcggt 99
               |||||||||||||||||||||
Sbjct: 3093236 ctggttgatggaagaagcggt 3093216
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>gb|AC126247.3| Mus musculus BAC clone RP24-370C15 from chromosome 13, complete sequence
          Length = 143813

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 50     ggcctatggagtacataaaaatgt 73
              |||||||||||||||| |||||||
Sbjct: 120641 ggcctatggagtacatgaaaatgt 120664
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>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part
              of the PDE4B gene for phosphodiesterase 4B, cAMP-specific
              (phosphodiesterase E4 dunce homolog, Drosophila), complete
              sequence
          Length = 152113

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tccagaaaatacagtttgaa 35
              ||||||||||||||||||||
Sbjct: 143247 tccagaaaatacagtttgaa 143228
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>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two
              novel genes, the 5' end of the Accn1 gene for neuronal
              amiloride-sensitive cation channel 1 (degenerin) and the
              Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and
              7, complete sequence
          Length = 223726

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     tatggagtacataaaaatgt 73
              ||||||||||||||||||||
Sbjct: 167046 tatggagtacataaaaatgt 167027
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>gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, complete sequence
          Length = 238472

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     agaaaatacagtttgaatac 38
              ||||||||||||||||||||
Sbjct: 123678 agaaaatacagtttgaatac 123659
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>gb|AC018467.9| Homo sapiens BAC clone RP11-398J17 from 2, complete sequence
          Length = 157611

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     aatacagtttgaatacaaga 42
              ||||||||||||||||||||
Sbjct: 113677 aatacagtttgaatacaaga 113696
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>dbj|AP003041.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-567M21, complete
             sequence
          Length = 188172

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    agaaaatacagtttgaatac 38
             ||||||||||||||||||||
Sbjct: 31322 agaaaatacagtttgaatac 31303
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>dbj|AP003326.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2178H20, complete
             sequence
          Length = 90920

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    agaaaatacagtttgaatac 38
             ||||||||||||||||||||
Sbjct: 81101 agaaaatacagtttgaatac 81082
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>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete
              sequence
          Length = 195598

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     acatgtccagaaaatacagtttg 33
              ||||| |||||||||||||||||
Sbjct: 186384 acatggccagaaaatacagtttg 186362
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>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence
          Length = 186659

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     cagaaaatacagtttgaat 36
              |||||||||||||||||||
Sbjct: 133414 cagaaaatacagtttgaat 133432
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>gb|AC163398.5| Mus musculus chromosome 18, clone RP24-376O5, complete sequence
          Length = 136268

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 64    ataaaaatgttnctactggttg 85
             ||||||||||| ||||||||||
Sbjct: 72142 ataaaaatgtttctactggttg 72163
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>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence
          Length = 168986

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     cagaaaatacagtttgaat 36
              |||||||||||||||||||
Sbjct: 151338 cagaaaatacagtttgaat 151356
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>gb|AC129542.9| Mus musculus chromosome 1, clone RP23-249L15, complete sequence
          Length = 194807

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    gaaaatacagtttgaatacaaga 42
             |||||||||||||||| ||||||
Sbjct: 34937 gaaaatacagtttgaaaacaaga 34915
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>gb|AC146650.13| Medicago truncatula clone mth2-14j5, complete sequence
          Length = 95379

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    ctatggagtacataaaaat 71
             |||||||||||||||||||
Sbjct: 70276 ctatggagtacataaaaat 70258
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>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 135139

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    ctatggagtacataaaaat 71
             |||||||||||||||||||
Sbjct: 46019 ctatggagtacataaaaat 46001
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>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a
             novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene
             and two novel genes, complete sequence
          Length = 134242

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    aatacagtttgaatacaag 41
             |||||||||||||||||||
Sbjct: 86130 aatacagtttgaatacaag 86112
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>emb|AL355522.11| Human DNA sequence from clone RP11-546O15 on chromosome 6 Contains the 3'
              end of the CLIC5 gene for chloride intracellular channel 5,
              complete sequence
          Length = 182982

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     tatggagtacataaaaatg 72
              |||||||||||||||||||
Sbjct: 124156 tatggagtacataaaaatg 124138
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>gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence
          Length = 163056

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     cagaaaatacagtttgaat 36
              |||||||||||||||||||
Sbjct: 118833 cagaaaatacagtttgaat 118815
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>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
              (pseudo)gene for a novel protein similar to high-mobility
              group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    ggatctccagcatctatgc 122
              |||||||||||||||||||
Sbjct: 153745 ggatctccagcatctatgc 153727
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>emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chromosome 4 Contains a high
              mobility group box 1 (Hmgb1) pseudogene, complete sequence
          Length = 185595

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    ggatctccagcatctatgc 122
              |||||||||||||||||||
Sbjct: 113078 ggatctccagcatctatgc 113060
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>gb|BC097982.1| Rattus norvegicus cDNA clone IMAGE:7443440, partial cds
          Length = 2727

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 43   ccaagatggcctatggagtacat 65
            |||||||| ||||||||||||||
Sbjct: 1531 ccaagatgacctatggagtacat 1509
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>gb|AC022740.4|AC022740 Homo sapiens chromosome 15, clone RP11-617D22, complete sequence
          Length = 162482

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    ggtcccgggatctccagca 115
             |||||||||||||||||||
Sbjct: 19700 ggtcccgggatctccagca 19718
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>emb|AL928869.11| Mouse DNA sequence from clone RP23-393F9 on chromosome 2, complete
             sequence
          Length = 97022

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    tttgaatacaagaccaaga 48
             |||||||||||||||||||
Sbjct: 43834 tttgaatacaagaccaaga 43852
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>gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence
          Length = 176875

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    ggtcccgggatctccagca 115
             |||||||||||||||||||
Sbjct: 48542 ggtcccgggatctccagca 48560
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>gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11-66F23, complete sequence
          Length = 182426

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    ggtcccgggatctccagca 115
             |||||||||||||||||||
Sbjct: 24053 ggtcccgggatctccagca 24035
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>emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in linkage group 10,
             complete sequence
          Length = 122664

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    cagaaaatacagtttgaat 36
             |||||||||||||||||||
Sbjct: 30981 cagaaaatacagtttgaat 30999
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     acatgtccagaaaatacag 29
              |||||||||||||||||||
Sbjct: 665861 acatgtccagaaaatacag 665843
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>emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chromosome 2, complete
             sequence
          Length = 154935

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 18    cagaaaatacagtttgaatacaa 40
             ||||||||||| |||||||||||
Sbjct: 71133 cagaaaatacattttgaatacaa 71155
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>emb|AL593855.9| Mouse DNA sequence from clone RP23-329H3 on chromosome 1, complete
              sequence
          Length = 177918

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     gaaaatacagtttgaatacaaga 42
              |||||||||||||||| ||||||
Sbjct: 134495 gaaaatacagtttgaaaacaaga 134473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,281,622
Number of Sequences: 3902068
Number of extensions: 1281622
Number of successful extensions: 73387
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73073
Number of HSP's gapped (non-prelim): 314
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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