ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLO8_ARATH (O22757) MLO-like protein 8 (AtMlo8) 31 3.0
2SRD48_CAEEL (O17822) Serpentine receptor class delta-48 (Protein... 30 6.7
3CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor 30 8.8

>MLO8_ARATH (O22757) MLO-like protein 8 (AtMlo8)|
          Length = 593

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 608 VRRRICLGMMCLMNGSCVLVTSKDGKYIHFKE 513
           +RR ICL + CL+ G   +VT++D K +  K+
Sbjct: 9   LRRLICLCLWCLLGGGVTVVTAEDEKKVVHKQ 40



to top

>SRD48_CAEEL (O17822) Serpentine receptor class delta-48 (Protein srd-48)|
          Length = 316

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 508 CPSLKCMYLPSFEVTRTQLPFIKHIIPKHILLRT 609
           CP   C ++ S   T+T LPF +HI+P  ++L T
Sbjct: 247 CPIFACYFVVSR--TKTDLPFEQHILPVLVMLPT 278



to top

>CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor|
          Length = 1406

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 593 CLGMMCLMNGSCVLVTSKDGKYIHFKEGQFNATLLCPN 480
           C    CL NG+C+          HF++GQ   + LCP+
Sbjct: 445 CTHQQCLNNGTCIP---------HFQDGQHGFSCLCPS 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,376,615
Number of Sequences: 219361
Number of extensions: 1309814
Number of successful extensions: 3475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3474
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top