ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor 34 0.32
2CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1) 34 0.32
3CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 34 0.32
4MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 32 0.94
5CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta... 32 1.2
6CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor 32 1.6
7CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor 32 1.6
8CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain 32 1.6
9RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro... 31 2.1
10CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 31 2.1
11NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf... 31 2.7
12CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta... 31 2.7
13CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragm... 31 2.7
14CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain... 31 2.7
15BCL3_MOUSE (Q9Z2F6) B-cell lymphoma 3-encoded protein homolog (P... 30 3.6
16HHP2_SCHPO (P40236) Casein kinase I homolog hhp2 (EC 2.7.11.1) 30 3.6
17NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120 (P... 30 4.6
18ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ... 30 4.6
19LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M ... 30 4.6
20SEM4B_HUMAN (Q9NPR2) Semaphorin-4B precursor 30 6.1
21DNAA_GLOVI (Q7NKK4) Chromosomal replication initiator protein dnaA 30 6.1
22HRR25_YEAST (P29295) Casein kinase I homolog HRR25 (EC 2.7.11.1) 30 6.1
23WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin... 30 6.1
24CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked h... 29 7.9
25HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated c... 29 7.9
26HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated... 29 7.9
27DAMX_SERMA (P45459) Protein damX (Fragment) 29 7.9
28TMBI1_HUMAN (Q969X1) Transmembrane BAX inhibitor motif-containin... 29 7.9
29SOX14_DROME (P40656) Putative transcription factor SOX-14 29 7.9
30DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) 29 7.9
31COL8_CAEEL (P18833) Cuticle collagen 8 precursor 29 7.9
32V70K_TYMVC (P28478) 69 kDa protein 29 7.9
33B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.... 29 7.9

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = -2

Query: 410  GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246
            GT+ EP ++  P + GQPG  G   P     R  +G PG  G P   H GP   V
Sbjct: 1004 GTAGEPGRDGNPGSDGQPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1054



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>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)|
          Length = 1431

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = -2

Query: 407  TSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGT----SGLPARIHS--GPSAHV 246
            T+P+P +    L SG  G S    P R     L+  PGT       PA+  S   P+ HV
Sbjct: 1279 TAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHV 1338

Query: 245  PLRPP 231
            P +PP
Sbjct: 1339 PAKPP 1343



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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = -2

Query: 410  GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246
            GT+ EP ++  P + GQPG  G   P     R  +G PG  G P   H GP   V
Sbjct: 1004 GTAGEPGRDGNPGSDGQPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1054



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 405  KPRTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRPACPHTLRPECPCT 244
            K R C      D     +F  RS S    A   G +    P+CP  L P+ PCT
Sbjct: 1020 KGRVCGLCGNFDDNAINDFATRSRSVVGDALEFGNSWKLSPSCPDALAPKDPCT 1073



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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = -2

Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225
           PE AQ  R    G+PGT G   P        SG PGT G+P    S  +  +   P FP
Sbjct: 316 PEGAQGPR----GEPGTPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 365



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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 413 SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLP 279
           SG    P     P  +G PG  G   PR +D + + G PG  G P
Sbjct: 426 SGIPGAPGVQGPPGLAGPPGAKGEPGPRGVDGQSIPGLPGKDGRP 470



 Score = 29.6 bits (65), Expect = 6.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 413  SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLP 279
            +G   EP     P   G+PG SG    R  D   + GKPG +GLP
Sbjct: 1308 AGIKGEPGLPGIPGAKGEPGLSGIPGKRGND--GIPGKPGPAGLP 1350



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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 413  SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246
            +GT+ EP ++  P + G PG  G   P     R  +G PG  G P   H GP   V
Sbjct: 1004 AGTAGEPGRDGNPGSDGLPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1055



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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -2

Query: 413  SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246
            +GT+ EP ++  P + G PG  G   P     R  +G PG  G P   H GP   V
Sbjct: 848  AGTAGEPGRDGNPGSDGLPGRDG--APGAKGDRGENGSPGAPGAPG--HPGPPGPV 899



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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -2

Query: 401 PEPAQNFRPLT--SGQPGTSGHAQPRRLD*RHLSGKPGTSGL---PARIHSGPSAHVPLR 237
           P P    +PLT  +GQP    HAQP      H  G PG   L   P   H GP     L 
Sbjct: 820 PSPHPPLQPLTGSAGQPSAPSHAQPP----LHGQGPPGPHSLQAGPLLQHPGPPQPFGLP 875

Query: 236 P 234
           P
Sbjct: 876 P 876



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 377  PLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPL-RPPFPT 222
            P   G PG +G A P+      L G+PG +G P R  +GP+  V L  PP P+
Sbjct: 2185 PGPPGAPGLAGPAGPQGPS--GLKGEPGETGPPGRGLTGPTGAVGLPGPPGPS 2235



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>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 protein)
          Length = 549

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 427 NFRPSPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPAC----LPAYTQA 260
           N  P+      LP T +   PAS  +P++    A +S      PE P+     LPA  + 
Sbjct: 335 NNEPALPSTSYLPSTPSV-VPASSYIPSSETPPAPSSREASRPPEEPSAPSPTLPAQFKQ 393

Query: 259 RVPMYPSGL 233
           R PMY SGL
Sbjct: 394 RAPMYNSGL 402



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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -2

Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225
           PE AQ  R    G+PG  G   P        SG PGT G+P    S  +  +   P FP
Sbjct: 357 PEGAQGSR----GEPGNPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 406



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>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -2

Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225
           PE AQ  R    G+PGT G   P        +G PGT G+P    S  +  +   P FP
Sbjct: 200 PEGAQGPR----GEPGTPGSPGPAGA-----AGNPGTDGIPGAKGSAGAPGIAGAPGFP 249



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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -2

Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225
           PE AQ  R    G+PG  G   P        SG PGT G+P    S  +  +   P FP
Sbjct: 317 PEGAQGSR----GEPGNPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 366



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>BCL3_MOUSE (Q9Z2F6) B-cell lymphoma 3-encoded protein homolog (Protein Bcl-3)|
          Length = 440

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
 Frame = -3

Query: 421 RPSPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPACL-PAYTQARVPMY 245
           RP       LP    P RPASPE PAT    A   D  R   ++P    P +  AR    
Sbjct: 11  RPKGTPGAALPLRKRPLRPASPE-PATTRSPAGPLDALRSGCDVPVVPGPPHCVAR---- 65

Query: 244 PSGLHFRLRL*ILFSYLRFRVS*CLDNHFLSLAPSTILLPWRCPPCGKIHSDAKAPNLGK 65
           P  L+++  L  ++S         L N  L   P +++ P   P    I    +    G 
Sbjct: 66  PEALYYQGPLMPIYSTPTMAPHFPLLN--LPTHPYSMICPMEHPLSADIAMATRVDEDGD 123

Query: 64  IPLRI 50
            PL I
Sbjct: 124 TPLHI 128



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>HHP2_SCHPO (P40236) Casein kinase I homolog hhp2 (EC 2.7.11.1)|
          Length = 400

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 332 EVERGRKFRAGRTSGGGSFGQV-LGL 406
           +++ G K+R GR  G GSFGQ+ LGL
Sbjct: 5   DIKIGNKYRIGRKIGSGSFGQIYLGL 30



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>NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120|
           (Proliferation-associated nucleolar protein p120)
          Length = 855

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 PWRCPPCGKIHSDAKAPNLGKIPLRIQ 47
           P+  PP G++  DA+AP+L ++  RIQ
Sbjct: 218 PFVLPPAGEMEQDAQAPDLQRVHKRIQ 244



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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/83 (20%), Positives = 36/83 (43%)
 Frame = -3

Query: 559  KTLRKWTRRRTSEITQARRSPQEPRTSGXXXXXXXXXXXXXXXDNFRPSPEQAQNLPKTS 380
            + L++  +++  ++ Q ++  Q+P+ S                    P PE+ +N+P+  
Sbjct: 3398 RQLQQQQQQQQQKVQQQQQQQQQPKASQTPVPQGAASPDKDPAKE-SPKPEEQKNVPREL 3456

Query: 379  AP*RPASPELPATLNLGASTSDI 311
            +P  P  PE P   +  AS   +
Sbjct: 3457 SPLLPKPPEEPEAESKSASADSL 3479



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>LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin|
            heavy chain)
          Length = 3106

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
 Frame = -1

Query: 423  FGLVRNKPRTCPKLPPPDVRPARNFRP----------RSTSAPR-----LATSIGKARNF 289
            +G+VR  P  C     P + P+ NF P          R T+ PR                
Sbjct: 1452 YGIVRGLPNDCQPCACPLISPSNNFSPSCVLEGLEDYRCTACPRGYEGQYCERCAPGYTG 1511

Query: 288  RPACPHTLRPECPCTPPASI 229
             P+ P     EC C P  S+
Sbjct: 1512 SPSSPGGSCQECECDPYGSL 1531



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>SEM4B_HUMAN (Q9NPR2) Semaphorin-4B precursor|
          Length = 832

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 402 PRTCPKLPPPDVRPARNFRPRST 334
           P+TCP + PP+ RP     P ST
Sbjct: 753 PKTCPVVLPPETRPLNGLGPPST 775



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>DNAA_GLOVI (Q7NKK4) Chromosomal replication initiator protein dnaA|
          Length = 442

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 264 RPECPCTPPASISDLDYKYSSPTFVLGLAN 175
           R   P  PPA+++ L+ KY+   FV+G  N
Sbjct: 91  REPAPAAPPANVASLNSKYTFSRFVVGANN 120



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>HRR25_YEAST (P29295) Casein kinase I homolog HRR25 (EC 2.7.11.1)|
          Length = 494

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 GRKFRAGRTSGGGSFGQV 397
           GRKFR GR  G GSFG +
Sbjct: 6   GRKFRIGRKIGSGSFGDI 23



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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 422 SA*SGTSPEPAQNFRPLTSG-QPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246
           SA S   P P    RP      P +SG+ +  RL  R+LS    T  LP+   SGP    
Sbjct: 301 SASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPP 360

Query: 245 PL-RPPFP 225
           P  RPP P
Sbjct: 361 PSERPPPP 368



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>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
          Length = 546

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 348 RPRSTSAPRLATSIGKA--RNFRPACPHTLRPECPCTPPAS 232
           R R+  +PR+  ++ +   R+  P+ P + RP  P TPPA+
Sbjct: 366 RARNLISPRMEKALSQLALRSAAPSSPGSPRPALPATPPAT 406



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>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 412 PEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPA 284
           P  +   P  S P  P+SP  P T   G   S   R  P LPA
Sbjct: 740 PAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPA 782



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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 412 PEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPA 284
           P  +   P  S P  P+SP  P T   G   S   R  P LPA
Sbjct: 740 PAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPA 782



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>DAMX_SERMA (P45459) Protein damX (Fragment)|
          Length = 214

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
 Frame = -1

Query: 549 GNGLEDERVR*PKQGEVHRSRELPGARTFXXXXXXXXXXSTTFGLVRNKPRTCPKLPPPD 370
           G+G   E    P+QG  H   +LPG              + T G+      T P  P   
Sbjct: 1   GSGTPTEAQTQPQQGGAHERVDLPGNMADALSQQQGQVDAATQGMT-GAASTLPTAPATV 59

Query: 369 VRPA---RNFRPRSTSAPRLATSIGKARNFRPACPHTLRPECPCTPPASIS 226
           +  A      RP   +AP+   +  K    +P       P    TPPA  S
Sbjct: 60  MSGAAAREATRPVQGTAPQQHKTPAKTAAAKPTATQHKSPTTVYTPPAKPS 110



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>TMBI1_HUMAN (Q969X1) Transmembrane BAX inhibitor motif-containing protein 1|
           (RECS1 protein homolog)
          Length = 311

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 407 TSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPP 231
           ++P P ++  PL  G P   G+ QP  L      G P   G P   +  P+ +    PP
Sbjct: 5   SAPPPYEDRNPLYPGPPPPGGYGQPSVLP----GGYPAYPGYPQPGYGHPAGYPQPMPP 59



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 405 KPRTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRP---ACPHTLRPECPCTPPA 235
           KP      PP  +RP       +T+  R AT   + R+  P   + PHTL P  P   PA
Sbjct: 4   KPNQATTEPPLSLRPGTVPTVPATTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPA 63

Query: 234 S 232
           S
Sbjct: 64  S 64



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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 398 EPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225
           EP Q   P ++G+PG  G   P        SG+PG  G P +   GP       PP P
Sbjct: 214 EPVQKGEPGSTGEPGPVGPPGP--------SGQPGNDGTPGQ--PGPKG-----PPGP 256



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>COL8_CAEEL (P18833) Cuticle collagen 8 precursor|
          Length = 282

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
 Frame = -2

Query: 410 GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARI----HSGPSAH-- 249
           G   EP   +RP   GQ G +G   PR        G PG  G P       + GP  H  
Sbjct: 195 GPRGEPGTEYRP---GQAGRAGPPGPR--------GPPGPEGNPGGAGEDGNQGPVGHPG 243

Query: 248 VPLRPPFP 225
           VP RP  P
Sbjct: 244 VPGRPGIP 251



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>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 415 SPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPACLP--AYTQARVPMYP 242
           SP   + LP++S P R   P   ATL         Y   P  PA LP  AYT +R  ++ 
Sbjct: 364 SPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRSYPFLPNPPAALPSIAYTSSRGKIHH 423

Query: 241 S 239
           S
Sbjct: 424 S 424



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>B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 1) [Includes: L
          Length = 397

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -1

Query: 399 RTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRPA-CPHTLR---PECPCTPPAS 232
           RT    PPP +  +   RP   S+P + +  G A N      PHT     P CP   P  
Sbjct: 77  RTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVPHTTALSLPACPEESPLL 136

Query: 231 ISDLDYKYSSP 199
           +  +  +++ P
Sbjct: 137 VGPMLIEFNMP 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,186,013
Number of Sequences: 219361
Number of extensions: 1919685
Number of successful extensions: 6301
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6264
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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