ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2b11 |
|---|---|
| Clone Library Name | barley_pub |
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 33.9 bits (76), Expect = 0.32 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = -2 Query: 410 GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246 GT+ EP ++ P + GQPG G P R +G PG G P H GP V Sbjct: 1004 GTAGEPGRDGNPGSDGQPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1054
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 33.9 bits (76), Expect = 0.32 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = -2 Query: 407 TSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGT----SGLPARIHS--GPSAHV 246 T+P+P + L SG G S P R L+ PGT PA+ S P+ HV Sbjct: 1279 TAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHV 1338 Query: 245 PLRPP 231 P +PP Sbjct: 1339 PAKPP 1343
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 33.9 bits (76), Expect = 0.32 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = -2 Query: 410 GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246 GT+ EP ++ P + GQPG G P R +G PG G P H GP V Sbjct: 1004 GTAGEPGRDGNPGSDGQPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1054
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 32.3 bits (72), Expect = 0.94 Identities = 18/54 (33%), Positives = 22/54 (40%) Frame = -1 Query: 405 KPRTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRPACPHTLRPECPCT 244 K R C D +F RS S A G + P+CP L P+ PCT Sbjct: 1020 KGRVCGLCGNFDDNAINDFATRSRSVVGDALEFGNSWKLSPSCPDALAPKDPCT 1073
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/59 (37%), Positives = 26/59 (44%) Frame = -2 Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225 PE AQ R G+PGT G P SG PGT G+P S + + P FP Sbjct: 316 PEGAQGPR----GEPGTPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -2 Query: 413 SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLP 279 SG P P +G PG G PR +D + + G PG G P Sbjct: 426 SGIPGAPGVQGPPGLAGPPGAKGEPGPRGVDGQSIPGLPGKDGRP 470 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = -2 Query: 413 SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLP 279 +G EP P G+PG SG R D + GKPG +GLP Sbjct: 1308 AGIKGEPGLPGIPGAKGEPGLSGIPGKRGND--GIPGKPGPAGLP 1350
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = -2 Query: 413 SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246 +GT+ EP ++ P + G PG G P R +G PG G P H GP V Sbjct: 1004 AGTAGEPGRDGNPGSDGLPGRDG--SPGGKGDRGENGSPGAPGAPG--HPGPPGPV 1055
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = -2 Query: 413 SGTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246 +GT+ EP ++ P + G PG G P R +G PG G P H GP V Sbjct: 848 AGTAGEPGRDGNPGSDGLPGRDG--APGAKGDRGENGSPGAPGAPG--HPGPPGPV 899
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 31.2 bits (69), Expect = 2.1 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Frame = -2 Query: 401 PEPAQNFRPLT--SGQPGTSGHAQPRRLD*RHLSGKPGTSGL---PARIHSGPSAHVPLR 237 P P +PLT +GQP HAQP H G PG L P H GP L Sbjct: 820 PSPHPPLQPLTGSAGQPSAPSHAQPP----LHGQGPPGPHSLQAGPLLQHPGPPQPFGLP 875 Query: 236 P 234 P Sbjct: 876 P 876
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 377 PLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPL-RPPFPT 222 P G PG +G A P+ L G+PG +G P R +GP+ V L PP P+ Sbjct: 2185 PGPPGAPGLAGPAGPQGPS--GLKGEPGETGPPGRGLTGPTGAVGLPGPPGPS 2235
>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 protein) Length = 549 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = -3 Query: 427 NFRPSPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPAC----LPAYTQA 260 N P+ LP T + PAS +P++ A +S PE P+ LPA + Sbjct: 335 NNEPALPSTSYLPSTPSV-VPASSYIPSSETPPAPSSREASRPPEEPSAPSPTLPAQFKQ 393 Query: 259 RVPMYPSGL 233 R PMY SGL Sbjct: 394 RAPMYNSGL 402
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -2 Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225 PE AQ R G+PG G P SG PGT G+P S + + P FP Sbjct: 357 PEGAQGSR----GEPGNPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 406
>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)| Length = 747 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = -2 Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225 PE AQ R G+PGT G P +G PGT G+P S + + P FP Sbjct: 200 PEGAQGPR----GEPGTPGSPGPAGA-----AGNPGTDGIPGAKGSAGAPGIAGAPGFP 249
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -2 Query: 401 PEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225 PE AQ R G+PG G P SG PGT G+P S + + P FP Sbjct: 317 PEGAQGSR----GEPGNPGSPGPAGA-----SGNPGTDGIPGAKGSAGAPGIAGAPGFP 366
>BCL3_MOUSE (Q9Z2F6) B-cell lymphoma 3-encoded protein homolog (Protein Bcl-3)| Length = 440 Score = 30.4 bits (67), Expect = 3.6 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 1/125 (0%) Frame = -3 Query: 421 RPSPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPACL-PAYTQARVPMY 245 RP LP P RPASPE PAT A D R ++P P + AR Sbjct: 11 RPKGTPGAALPLRKRPLRPASPE-PATTRSPAGPLDALRSGCDVPVVPGPPHCVAR---- 65 Query: 244 PSGLHFRLRL*ILFSYLRFRVS*CLDNHFLSLAPSTILLPWRCPPCGKIHSDAKAPNLGK 65 P L+++ L ++S L N L P +++ P P I + G Sbjct: 66 PEALYYQGPLMPIYSTPTMAPHFPLLN--LPTHPYSMICPMEHPLSADIAMATRVDEDGD 123 Query: 64 IPLRI 50 PL I Sbjct: 124 TPLHI 128
>HHP2_SCHPO (P40236) Casein kinase I homolog hhp2 (EC 2.7.11.1)| Length = 400 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%) Frame = +2 Query: 332 EVERGRKFRAGRTSGGGSFGQV-LGL 406 +++ G K+R GR G GSFGQ+ LGL Sbjct: 5 DIKIGNKYRIGRKIGSGSFGQIYLGL 30
>NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120| (Proliferation-associated nucleolar protein p120) Length = 855 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 127 PWRCPPCGKIHSDAKAPNLGKIPLRIQ 47 P+ PP G++ DA+AP+L ++ RIQ Sbjct: 218 PFVLPPAGEMEQDAQAPDLQRVHKRIQ 244
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 30.0 bits (66), Expect = 4.6 Identities = 17/83 (20%), Positives = 36/83 (43%) Frame = -3 Query: 559 KTLRKWTRRRTSEITQARRSPQEPRTSGXXXXXXXXXXXXXXXDNFRPSPEQAQNLPKTS 380 + L++ +++ ++ Q ++ Q+P+ S P PE+ +N+P+ Sbjct: 3398 RQLQQQQQQQQQKVQQQQQQQQQPKASQTPVPQGAASPDKDPAKE-SPKPEEQKNVPREL 3456 Query: 379 AP*RPASPELPATLNLGASTSDI 311 +P P PE P + AS + Sbjct: 3457 SPLLPKPPEEPEAESKSASADSL 3479
>LAMA2_MOUSE (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin| heavy chain) Length = 3106 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 15/80 (18%) Frame = -1 Query: 423 FGLVRNKPRTCPKLPPPDVRPARNFRP----------RSTSAPR-----LATSIGKARNF 289 +G+VR P C P + P+ NF P R T+ PR Sbjct: 1452 YGIVRGLPNDCQPCACPLISPSNNFSPSCVLEGLEDYRCTACPRGYEGQYCERCAPGYTG 1511 Query: 288 RPACPHTLRPECPCTPPASI 229 P+ P EC C P S+ Sbjct: 1512 SPSSPGGSCQECECDPYGSL 1531
>SEM4B_HUMAN (Q9NPR2) Semaphorin-4B precursor| Length = 832 Score = 29.6 bits (65), Expect = 6.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 402 PRTCPKLPPPDVRPARNFRPRST 334 P+TCP + PP+ RP P ST Sbjct: 753 PKTCPVVLPPETRPLNGLGPPST 775
>DNAA_GLOVI (Q7NKK4) Chromosomal replication initiator protein dnaA| Length = 442 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 264 RPECPCTPPASISDLDYKYSSPTFVLGLAN 175 R P PPA+++ L+ KY+ FV+G N Sbjct: 91 REPAPAAPPANVASLNSKYTFSRFVVGANN 120
>HRR25_YEAST (P29295) Casein kinase I homolog HRR25 (EC 2.7.11.1)| Length = 494 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +2 Query: 344 GRKFRAGRTSGGGSFGQV 397 GRKFR GR G GSFG + Sbjct: 6 GRKFRIGRKIGSGSFGDI 23
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 29.6 bits (65), Expect = 6.1 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = -2 Query: 422 SA*SGTSPEPAQNFRPLTSG-QPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHV 246 SA S P P RP P +SG+ + RL R+LS T LP+ SGP Sbjct: 301 SASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPP 360 Query: 245 PL-RPPFP 225 P RPP P Sbjct: 361 PSERPPPP 368
>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)| Length = 546 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = -1 Query: 348 RPRSTSAPRLATSIGKA--RNFRPACPHTLRPECPCTPPAS 232 R R+ +PR+ ++ + R+ P+ P + RP P TPPA+ Sbjct: 366 RARNLISPRMEKALSQLALRSAAPSSPGSPRPALPATPPAT 406
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -3 Query: 412 PEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPA 284 P + P S P P+SP P T G S R P LPA Sbjct: 740 PAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPA 782
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -3 Query: 412 PEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPA 284 P + P S P P+SP P T G S R P LPA Sbjct: 740 PAASPGPPAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPA 782
>DAMX_SERMA (P45459) Protein damX (Fragment)| Length = 214 Score = 29.3 bits (64), Expect = 7.9 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Frame = -1 Query: 549 GNGLEDERVR*PKQGEVHRSRELPGARTFXXXXXXXXXXSTTFGLVRNKPRTCPKLPPPD 370 G+G E P+QG H +LPG + T G+ T P P Sbjct: 1 GSGTPTEAQTQPQQGGAHERVDLPGNMADALSQQQGQVDAATQGMT-GAASTLPTAPATV 59 Query: 369 VRPA---RNFRPRSTSAPRLATSIGKARNFRPACPHTLRPECPCTPPASIS 226 + A RP +AP+ + K +P P TPPA S Sbjct: 60 MSGAAAREATRPVQGTAPQQHKTPAKTAAAKPTATQHKSPTTVYTPPAKPS 110
>TMBI1_HUMAN (Q969X1) Transmembrane BAX inhibitor motif-containing protein 1| (RECS1 protein homolog) Length = 311 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -2 Query: 407 TSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPP 231 ++P P ++ PL G P G+ QP L G P G P + P+ + PP Sbjct: 5 SAPPPYEDRNPLYPGPPPPGGYGQPSVLP----GGYPAYPGYPQPGYGHPAGYPQPMPP 59
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -1 Query: 405 KPRTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRP---ACPHTLRPECPCTPPA 235 KP PP +RP +T+ R AT + R+ P + PHTL P P PA Sbjct: 4 KPNQATTEPPLSLRPGTVPTVPATTPARPATITIQRRHPAPKADSTPHTLPPFSPSPSPA 63 Query: 234 S 232 S Sbjct: 64 S 64
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/58 (34%), Positives = 25/58 (43%) Frame = -2 Query: 398 EPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARIHSGPSAHVPLRPPFP 225 EP Q P ++G+PG G P SG+PG G P + GP PP P Sbjct: 214 EPVQKGEPGSTGEPGPVGPPGP--------SGQPGNDGTPGQ--PGPKG-----PPGP 256
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Frame = -2 Query: 410 GTSPEPAQNFRPLTSGQPGTSGHAQPRRLD*RHLSGKPGTSGLPARI----HSGPSAH-- 249 G EP +RP GQ G +G PR G PG G P + GP H Sbjct: 195 GPRGEPGTEYRP---GQAGRAGPPGPR--------GPPGPEGNPGGAGEDGNQGPVGHPG 243 Query: 248 VPLRPPFP 225 VP RP P Sbjct: 244 VPGRPGIP 251
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -3 Query: 415 SPEQAQNLPKTSAP*RPASPELPATLNLGASTSDIYRESPELPACLP--AYTQARVPMYP 242 SP + LP++S P R P ATL Y P PA LP AYT +R ++ Sbjct: 364 SPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRSYPFLPNPPAALPSIAYTSSRGKIHH 423 Query: 241 S 239 S Sbjct: 424 S 424
>B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 1) [Includes: L Length = 397 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = -1 Query: 399 RTCPKLPPPDVRPARNFRPRSTSAPRLATSIGKARNFRPA-CPHTLR---PECPCTPPAS 232 RT PPP + + RP S+P + + G A N PHT P CP P Sbjct: 77 RTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVPHTTALSLPACPEESPLL 136 Query: 231 ISDLDYKYSSP 199 + + +++ P Sbjct: 137 VGPMLIEFNMP 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,186,013 Number of Sequences: 219361 Number of extensions: 1919685 Number of successful extensions: 6301 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5580 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6264 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
