Clone Name | rbasd2b11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC147971.2| Gallus gallus BAC clone CH261-79K6 from chromosome unknown, complete sequence Length = 229445 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 204 aagagtatttatagtctaagtc 225 |||||||||||||||||||||| Sbjct: 119541 aagagtatttatagtctaagtc 119562
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 gcaaggggatcttccctagat 75 ||||||||||||||||||||| Sbjct: 878445 gcaaggggatcttccctagat 878465
>emb|AJ581920.1|TAE581920 Triticum aestivum RAFTIN1b gene promoter Length = 2095 Score = 40.1 bits (20), Expect = 7.6 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 274 cgggcaggcaggccggaagttccgggctttcc 305 |||||||| ||||| ||||||||||||||||| Sbjct: 880 cgggcagg-aggccagaagttccgggctttcc 850
>emb|CR762385.5| Zebrafish DNA sequence from clone DKEY-245L10 in linkage group 5, complete sequence Length = 99183 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gttttgggcaggttctgggc 403 |||||||||||||||||||| Sbjct: 23674 gttttgggcaggttctgggc 23693
>ref|XM_682251.1| PREDICTED: Danio rerio similar to Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit) (LOC558958), mRNA Length = 3888 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gttttgggcaggttctgggc 403 |||||||||||||||||||| Sbjct: 3866 gttttgggcaggttctgggc 3847
>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15, complete sequence Length = 192849 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atgggaggaggatagtagat 143 |||||||||||||||||||| Sbjct: 160131 atgggaggaggatagtagat 160112
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 caggccggaagttccgggctttcc 305 ||||||||||||||||||| |||| Sbjct: 8335753 caggccggaagttccgggccttcc 8335776
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 caggccggaagttccgggctttcc 305 ||||||||||||||||||| |||| Sbjct: 112424 caggccggaagttccgggccttcc 112447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,163,724 Number of Sequences: 3902068 Number of extensions: 3163724 Number of successful extensions: 55861 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55813 Number of HSP's gapped (non-prelim): 49 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)