ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC147971.2| Gallus gallus BAC clone CH261-79K6 from chromosom... 44 0.49
2dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 42 1.9
3emb|AJ581920.1|TAE581920 Triticum aestivum RAFTIN1b gene promoter 40 7.6
4emb|CR762385.5| Zebrafish DNA sequence from clone DKEY-245L10 in... 40 7.6
5ref|XM_682251.1| PREDICTED: Danio rerio similar to Laminin gamma... 40 7.6
6emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in l... 40 7.6
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
8dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6

>gb|AC147971.2| Gallus gallus BAC clone CH261-79K6 from chromosome unknown, complete
              sequence
          Length = 229445

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 204    aagagtatttatagtctaagtc 225
              ||||||||||||||||||||||
Sbjct: 119541 aagagtatttatagtctaagtc 119562



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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     gcaaggggatcttccctagat 75
              |||||||||||||||||||||
Sbjct: 878445 gcaaggggatcttccctagat 878465



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>emb|AJ581920.1|TAE581920 Triticum aestivum RAFTIN1b gene promoter
          Length = 2095

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 274 cgggcaggcaggccggaagttccgggctttcc 305
           |||||||| ||||| |||||||||||||||||
Sbjct: 880 cgggcagg-aggccagaagttccgggctttcc 850



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>emb|CR762385.5| Zebrafish DNA sequence from clone DKEY-245L10 in linkage group 5,
             complete sequence
          Length = 99183

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gttttgggcaggttctgggc 403
             ||||||||||||||||||||
Sbjct: 23674 gttttgggcaggttctgggc 23693



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>ref|XM_682251.1| PREDICTED: Danio rerio similar to Laminin gamma-3 chain precursor
            (Laminin 12 gamma 3 subunit) (LOC558958), mRNA
          Length = 3888

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gttttgggcaggttctgggc 403
            ||||||||||||||||||||
Sbjct: 3866 gttttgggcaggttctgggc 3847



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>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15, complete
              sequence
          Length = 192849

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    atgggaggaggatagtagat 143
              ||||||||||||||||||||
Sbjct: 160131 atgggaggaggatagtagat 160112



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 282     caggccggaagttccgggctttcc 305
               ||||||||||||||||||| ||||
Sbjct: 8335753 caggccggaagttccgggccttcc 8335776



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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 282    caggccggaagttccgggctttcc 305
              ||||||||||||||||||| ||||
Sbjct: 112424 caggccggaagttccgggccttcc 112447


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,163,724
Number of Sequences: 3902068
Number of extensions: 3163724
Number of successful extensions: 55861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55813
Number of HSP's gapped (non-prelim): 49
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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