ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1m11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 226 bits (114), Expect = 5e-56 Identities = 186/210 (88%) Strand = Plus / Minus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 602 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 543 Query: 277 cttggaacctcaagaatctttagcacaagctcttcaaaacatttctccacattttctctt 336 ||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||| Sbjct: 542 cttggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctctt 483 Query: 337 gttttggcactgctttcgagaaaaaggcatccacattgctgtgcaaaggcaagaccttct 396 |||||||||||||| || |||||||| |||||| ||| ||| |||||||||||||||||| Sbjct: 482 gttttggcactgctctcaagaaaaagacatccagattcctgggcaaaggcaagaccttct 423 Query: 397 tctgttgttaccattctgtcctcatccttg 426 || |||| ||||| || ||||||| |||| Sbjct: 422 tcccttgtcaccatcctttcctcattcttg 393
>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full insert sequence Length = 1083 Score = 226 bits (114), Expect = 5e-56 Identities = 186/210 (88%) Strand = Plus / Minus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 726 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 667 Query: 277 cttggaacctcaagaatctttagcacaagctcttcaaaacatttctccacattttctctt 336 ||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||| Sbjct: 666 cttggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctctt 607 Query: 337 gttttggcactgctttcgagaaaaaggcatccacattgctgtgcaaaggcaagaccttct 396 |||||||||||||| || |||||||| |||||| ||| ||| |||||||||||||||||| Sbjct: 606 gttttggcactgctctcaagaaaaagacatccagattcctgggcaaaggcaagaccttct 547 Query: 397 tctgttgttaccattctgtcctcatccttg 426 || |||| ||||| || ||||||| |||| Sbjct: 546 tcccttgtcaccatcctttcctcattcttg 517
>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full insert sequence Length = 1002 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Minus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 718 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 659 Query: 277 cttggaacctcaagaatctttagcacaagctcttcaaaacatttctccacattttctctt 336 ||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||||| Sbjct: 658 cttggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctctt 599 Query: 337 gttttggcactgctttcgagaaaaaggcatccacattgctgtgcaaaggcaagaccttct 396 |||||||||||||| || |||||||| |||||| || ||| |||||||||||||||||| Sbjct: 598 gttttggcactgctctcaagaaaaagacatccagatccctgggcaaaggcaagaccttct 539 Query: 397 tctgttgttaccattctgtcctcatccttg 426 || |||| ||||| || ||||||| |||| Sbjct: 538 tcccttgtcaccatcctttcctcattcttg 509
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 143 bits (72), Expect = 5e-31 Identities = 108/120 (90%) Strand = Plus / Minus Query: 302 caagctcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaa 361 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 2538511 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 2538452 Query: 362 ggcatccacattgctgtgcaaaggcaagaccttcttctgttgttaccattctgtcctcat 421 | |||||| ||| ||| |||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 2538451 gacatccagattcctgggcaaaggcaagaccttcttcccttgtcaccatcctttcctcat 2538392 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 2540428 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 2540369 Query: 277 cttggaacctcaagaatct 295 ||||| ||||||||||||| Sbjct: 2540368 cttggtacctcaagaatct 2540350
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 143 bits (72), Expect = 5e-31 Identities = 108/120 (90%) Strand = Plus / Plus Query: 302 caagctcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaa 361 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 131583 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 131642 Query: 362 ggcatccacattgctgtgcaaaggcaagaccttcttctgttgttaccattctgtcctcat 421 | |||||| ||| ||| |||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 131643 gacatccagattcctgggcaaaggcaagaccttcttcccttgtcaccatcctttcctcat 131702 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 129666 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 129725 Query: 277 cttggaacctcaagaatct 295 ||||| ||||||||||||| Sbjct: 129726 cttggtacctcaagaatct 129744
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 143 bits (72), Expect = 5e-31 Identities = 108/120 (90%) Strand = Plus / Minus Query: 302 caagctcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaa 361 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 2538621 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 2538562 Query: 362 ggcatccacattgctgtgcaaaggcaagaccttcttctgttgttaccattctgtcctcat 421 | |||||| ||| ||| |||||||||||||||||||| |||| ||||| || ||||||| Sbjct: 2538561 gacatccagattcctgggcaaaggcaagaccttcttcccttgtcaccatcctttcctcat 2538502 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 217 ttctcatgcttctgtttcagcgagttcctcttgacgaccgacgagccttcctccgacaga 276 ||||| |||||||||||||| |||||||||||||| || || || ||||||||| | ||| Sbjct: 2540538 ttctcgtgcttctgtttcagagagttcctcttgacaactgaagaaccttcctccaagaga 2540479 Query: 277 cttggaacctcaagaatct 295 ||||| ||||||||||||| Sbjct: 2540478 cttggtacctcaagaatct 2540460
>gb|AY108713.1| Zea mays PCO101165 mRNA sequence Length = 755 Score = 105 bits (53), Expect = 1e-19 Identities = 92/105 (87%) Strand = Plus / Minus Query: 322 tccacattttctcttgttttggcactgctttcgagaaaaaggcatccacattgctgtgca 381 ||||| |||||||||||||| ||||| || |||| ||| || ||||||| || |||||| Sbjct: 751 tccacgttttctcttgttttagcactactctcgacaaagagacatccacgttcttgtgca 692 Query: 382 aaggcaagaccttcttctgttgttaccattctgtcctcatccttg 426 || ||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 691 aatgcaagaccttcttcttttgtcaccattctgtcctcatccttg 647
>emb|AJ865107.1| Cocos nucifera microsatellite DNA, clone CnCir J2 Length = 527 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 306 ctcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggca 365 ||||||||||||||||||||||||||| | |||||| ||||||| ||| ||||| | ||| Sbjct: 513 ctcttcaaaacatttctccacattttcccgtgtttttgcactgcattcaagaaacaagca 454 Query: 366 tccacattgctgtgcaaaggcaa 388 |||| |||| || ||||| |||| Sbjct: 453 tccatattgttgcgcaaaagcaa 431
>ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative GTP-binding protein (OSJNBa0018F16.14), mRNA Length = 669 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 307 tcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggcat 366 ||||||||||| ||||| ||||| |||| |||||| || || || || ||||| |||||| Sbjct: 542 tcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaataggcat 483 Query: 367 ccacattgctgtgcaaaggcaagaccttcttctgttgt 404 ||| ||| | |||||||||||| ||||||||| |||| Sbjct: 482 ccagattcttctgcaaaggcaagcccttcttctcttgt 445
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 307 tcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggcat 366 ||||||||||| ||||| ||||| |||| |||||| || || || || ||||| |||||| Sbjct: 59099 tcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaataggcat 59158 Query: 367 ccacattgctgtgcaaaggcaagaccttcttctgttgt 404 ||| ||| | |||||||||||| ||||||||| |||| Sbjct: 59159 ccagattcttctgcaaaggcaagcccttcttctcttgt 59196
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 307 tcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggcat 366 ||||||||||| ||||| ||||| |||| |||||| || || || || ||||| |||||| Sbjct: 16180210 tcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaataggcat 16180269 Query: 367 ccacattgctgtgcaaaggcaagaccttcttctgttgt 404 ||| ||| | |||||||||||| ||||||||| |||| Sbjct: 16180270 ccagattcttctgcaaaggcaagcccttcttctcttgt 16180307
>dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109P10, full insert sequence Length = 1101 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 307 tcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggcat 366 ||||||||||| ||||| ||||| |||| |||||| || || || || ||||| |||||| Sbjct: 724 tcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaataggcat 665 Query: 367 ccacattgctgtgcaaaggcaagaccttcttctgttgt 404 ||| ||| | |||||||||||| ||||||||| |||| Sbjct: 664 ccagattcttctgcaaaggcaagcccttcttctcttgt 627
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 307 tcttcaaaacatttctccacattttctcttgttttggcactgctttcgagaaaaaggcat 366 ||||||||||| ||||| ||||| |||| |||||| || || || || ||||| |||||| Sbjct: 16188451 tcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaataggcat 16188510 Query: 367 ccacattgctgtgcaaaggcaagaccttcttctgttgt 404 ||| ||| | |||||||||||| ||||||||| |||| Sbjct: 16188511 ccagattcttctgcaaaggcaagcccttcttctcttgt 16188548
>gb|AY813475.1| Schistosoma japonicum SJCHGC06695 protein mRNA, complete cds Length = 989 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 325 acattttctcttgttttggcactgctttcgagaaaaag 362 |||||||| ||||||||||||||| |||| | |||||| Sbjct: 450 acattttcacttgttttggcactggtttcaacaaaaag 413
>gb|AC146238.2| Pan troglodytes BAC clone CH251-170A15 from Y, complete sequence Length = 169552 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 tccacattttctcttgttttg 342 ||||||||||||||||||||| Sbjct: 36498 tccacattttctcttgttttg 36518
>ref|XM_965991.1| PREDICTED: Tribolium castaneum similar to Cadherin-related tumor suppressor precursor (Fat protein) (LOC659713), mRNA Length = 15795 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 caagttgttatttctccctcc 54 ||||||||||||||||||||| Sbjct: 12222 caagttgttatttctccctcc 12202
>dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, complete sequence Length = 140513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 tccacattttctcttgttttg 342 ||||||||||||||||||||| Sbjct: 74579 tccacattttctcttgttttg 74599
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 tccacattttctcttgttttg 342 ||||||||||||||||||||| Sbjct: 20137404 tccacattttctcttgttttg 20137384
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence Length = 112428 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 301 acaagctcttcaaaacatttctccacattttctcttgttttggcactgc 349 |||||||||||||| |||| || ||||||| ||| ||||| ||||||| Sbjct: 47035 acaagctcttcaaagcattgctgcacatttactcgagttttagcactgc 46987
>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete sequence Length = 200403 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 tccacattttctcttgttttg 342 ||||||||||||||||||||| Sbjct: 170896 tccacattttctcttgttttg 170916
>emb|AL845167.7| Mouse DNA sequence from clone RP23-36P16 on chromosome X, complete sequence Length = 162237 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 382 aaggcaagaccttcttctgttgttaccat 410 ||||||||||||| |||||||| |||||| Sbjct: 33363 aaggcaagaccttgttctgttgataccat 33391
>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA, complete cds Length = 990 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 292 atctttagcacaagctcttcaaaacatt 319 ||||| || ||||||||||||||||||| Sbjct: 631 atcttaagaacaagctcttcaaaacatt 604
>gb|AC168269.3| Mus musculus BAC clone RP23-193M17 from chromosome 17, complete sequence Length = 223337 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 atttctccctcccctttact 62 |||||||||||||||||||| Sbjct: 60500 atttctccctcccctttact 60481
>gb|AC158141.8| Mus musculus chromosome 5, clone RP23-281M20, complete sequence Length = 220396 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 tttctccacattttctcttgtttt 341 |||||||| ||||||||||||||| Sbjct: 47709 tttctccatattttctcttgtttt 47686
>ref|NM_001007117.1| Danio rerio helentron 3 helitron-like transposon replicase/helicase/endonuclease (hel_dr3), mRNA Length = 7062 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cttctcatgcttctgtttca 235 |||||||||||||||||||| Sbjct: 5586 cttctcatgcttctgtttca 5567
>emb|AJ784061.1| Influenza B virus (B/Jiangsu/10/03) partial HA gene for haemagglutinin, genomic RNA Length = 1080 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 acagacttggaacctcaaga 291 |||||||||||||||||||| Sbjct: 449 acagacttggaacctcaaga 468
>emb|AL161424.13| Human DNA sequence from clone RP11-175B12 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1) and a novel gene, complete sequence Length = 126427 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaacctcaagttgttatttc 47 |||||||||||||||||||| Sbjct: 95977 aaacctcaagttgttatttc 95958
>emb|AL136117.12| Human DNA sequence from clone CTC-1333E1 on chromosome 6, complete sequence Length = 86514 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ctcttcaaaacatttctcca 325 |||||||||||||||||||| Sbjct: 23870 ctcttcaaaacatttctcca 23889
>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 670 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 292 atctttagcacaagctcttcaaaacatt 319 ||||| || ||||||||||||||||||| Sbjct: 524 atcttaagaacaagctcttcaaaacatt 497
>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890) mRNA, complete cds Length = 864 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 292 atctttagcacaagctcttcaaaacatt 319 ||||| || ||||||||||||||||||| Sbjct: 595 atcttaagaacaagctcttcaaaacatt 568
>emb|BX324181.26| Zebrafish DNA sequence from clone CH211-203O8 in linkage group 4, complete sequence Length = 141840 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cttctcatgcttctgtttca 235 |||||||||||||||||||| Sbjct: 81682 cttctcatgcttctgtttca 81663
>dbj|AB209933.1| Crocodylus niloticus ERa mRNA for estrogen receptor alpha, complete cds Length = 1764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acccttcacaccaaaacctc 34 |||||||||||||||||||| Sbjct: 10 acccttcacaccaaaacctc 29
>gb|AC114301.2| Homo sapiens chromosome 5 clone RP11-143L23, complete sequence Length = 162976 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cacattttctcttgttttgg 343 |||||||||||||||||||| Sbjct: 128110 cacattttctcttgttttgg 128091
>gb|AC098567.4| Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17, complete sequence Length = 185277 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 atttctccctcccctttact 62 |||||||||||||||||||| Sbjct: 167779 atttctccctcccctttact 167798
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaacctcaagttgttatttc 47 |||||||||||||||||||| Sbjct: 297767 aaacctcaagttgttatttc 297748
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tcttcaaaacatttctccac 326 |||||||||||||||||||| Sbjct: 1744689 tcttcaaaacatttctccac 1744708
>emb|BX296554.9| Zebrafish DNA sequence from clone DKEYP-30G1 in linkage group 5, complete sequence Length = 126703 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 aaaggcatccacattgctgtgcaa 382 ||||||||||||||||||| |||| Sbjct: 35005 aaaggcatccacattgctgagcaa 34982
>gb|DQ067625.1| Paramecium octaurelia histone H4 gene, partial cds Length = 105 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 aagctcttcaaaacatttct 322 |||||||||||||||||||| Sbjct: 74 aagctcttcaaaacatttct 55
>gb|AC026812.3| Homo sapiens chromosome 5 clone P1_420D1, complete sequence Length = 43369 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cacattttctcttgttttgg 343 |||||||||||||||||||| Sbjct: 40248 cacattttctcttgttttgg 40267
>gb|AC007304.11| Homo sapiens chromosome 13 clone 168l22 map 13q14, complete sequence Length = 120205 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aaacctcaagttgttatttc 47 |||||||||||||||||||| Sbjct: 1123 aaacctcaagttgttatttc 1104
>tpg|BK001159.1| TPA: TPA_exp: Danio rerio transposon helitron-like Hel_Dr3 replicase/helicase/endonuclease gene, complete cds Length = 7062 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cttctcatgcttctgtttca 235 |||||||||||||||||||| Sbjct: 5586 cttctcatgcttctgtttca 5567
>gb|AC154584.3| Mus musculus BAC clone RP23-248M3 from chromosome 13, complete sequence Length = 166580 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tccacattttctcttgtttt 341 |||||||||||||||||||| Sbjct: 101743 tccacattttctcttgtttt 101762
>gb|AC084543.1|CBRG28M02 Caenorhabditis briggsae cosmid G28M02, complete sequence Length = 44796 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cttcttctgttgttaccattctgt 415 |||||||| ||||||||||||||| Sbjct: 18974 cttcttcttttgttaccattctgt 18951
>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence Length = 884 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 292 atctttagcacaagctcttcaaaacatt 319 ||||| || ||||||||||||||||||| Sbjct: 634 atcttaagaacaagctcttcaaaacatt 607
>dbj|AB115909.1| Alligator mississippiensis ERa mRNA for estrogen receptor a, complete cds Length = 1764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acccttcacaccaaaacctc 34 |||||||||||||||||||| Sbjct: 10 acccttcacaccaaaacctc 29
>gb|AC002427.1|AC002427 Homo sapiens BAC clone GS1-11E15 from 5q31, complete sequence Length = 101098 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cacattttctcttgttttgg 343 |||||||||||||||||||| Sbjct: 5262 cacattttctcttgttttgg 5281
>gb|AF144035.1|AF144035 Nosema locustae transcription initiation factor TFIID (TBP) gene, complete cds Length = 911 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 tgtgcaaaggcaagaccttc 395 |||||||||||||||||||| Sbjct: 652 tgtgcaaaggcaagaccttc 633
>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence Length = 203072 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tctccacattttctcttgttttgg 343 ||||||| |||||||||||||||| Sbjct: 123802 tctccactttttctcttgttttgg 123779
>gb|AC011311.11| Homo sapiens 3 BAC RP11-525K18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttatttctccctccccttta 60 |||||||||||||||||||| Sbjct: 166752 ttatttctccctccccttta 166771
>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete sequence Length = 218889 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 aaaggcatccacattgctgtgcaa 382 |||||||| ||||||||||||||| Sbjct: 112534 aaaggcatacacattgctgtgcaa 112557
>emb|AL928815.15| Zebrafish DNA sequence from clone BUSM1-257N2 in linkage group 2, complete sequence Length = 95293 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cttctcatgcttctgtttca 235 |||||||||||||||||||| Sbjct: 29066 cttctcatgcttctgtttca 29085
>gb|AC005138.1|AC005138 Homo sapiens chromosome 17, clone hRPK.261_A_13, complete sequence Length = 145618 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ctggcagcatcccccactct 217 |||||||||||||||||||| Sbjct: 140077 ctggcagcatcccccactct 140058
>gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, complete sequence Length = 178756 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ttgcgagatctagttggttg 168 |||||||||||||||||||| Sbjct: 174471 ttgcgagatctagttggttg 174490
>gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complete sequence Length = 193752 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ttgttaccattctgtcctca 420 |||||||||||||||||||| Sbjct: 121421 ttgttaccattctgtcctca 121402
>gb|L79911.1|ZFIER Taeniopygia guttata estrogen receptor mRNA, complete cds Length = 2792 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acccttcacaccaaaacctc 34 |||||||||||||||||||| Sbjct: 136 acccttcacaccaaaacctc 155
>gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete sequence Length = 115967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ctcttcaaaacatttctcca 325 |||||||||||||||||||| Sbjct: 3597 ctcttcaaaacatttctcca 3578
>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds Length = 700 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 292 atctttagcacaagctcttcaaaacatt 319 ||||| || ||||||||||||||||||| Sbjct: 543 atcttaagaacaagctcttcaaaacatt 516
>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence Length = 169556 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ttgcgagatctagttggttg 168 |||||||||||||||||||| Sbjct: 68968 ttgcgagatctagttggttg 68949
>dbj|AB055220.1| Caiman crocodilus ER mRNA for estrogen receptor, complete cds Length = 1764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acccttcacaccaaaacctc 34 |||||||||||||||||||| Sbjct: 10 acccttcacaccaaaacctc 29 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,118,620 Number of Sequences: 3902068 Number of extensions: 4118620 Number of successful extensions: 79603 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79399 Number of HSP's gapped (non-prelim): 204 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
