Clone Name | rbasd2b07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA Length = 1248 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 1189 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 1131 Query: 258 tt 259 || Sbjct: 1130 tt 1129
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 10006276 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 10006218 Query: 258 tt 259 || Sbjct: 10006217 tt 10006216
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 86558 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 86500 Query: 258 tt 259 || Sbjct: 86499 tt 86498
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 142042 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 141984 Query: 258 tt 259 || Sbjct: 141983 tt 141982
>dbj|AK069448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020G14, full insert sequence Length = 890 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 425 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 367 Query: 258 tt 259 || Sbjct: 366 tt 365
>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full insert sequence Length = 2351 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 1907 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 1849 Query: 258 tt 259 || Sbjct: 1848 tt 1847
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 33833 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 33775 Query: 258 tt 259 || Sbjct: 33774 tt 33773
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 60.0 bits (30), Expect = 4e-06 Identities = 55/62 (88%), Gaps = 1/62 (1%) Strand = Plus / Minus Query: 198 ggagcttccttattccaccgtagaatccatcgctctcgtttgccttcttccctgtggtcc 257 |||||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| Sbjct: 100769 ggagcttcctgattccaccgtagaaaccgtcgccctc-attgccctcttccctgtggtcc 100711 Query: 258 tt 259 || Sbjct: 100710 tt 100709
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 230 ctctcgtttgccttcttccctgtggtcctttc 261 |||| ||||||||||||||||||| ||||||| Sbjct: 667524 ctcttgtttgccttcttccctgtgctcctttc 667493
>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence Length = 117818 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 230 ctctcgtttgccttcttccctgtggtcctttc 261 |||| ||||||||||||||||||| ||||||| Sbjct: 89886 ctcttgtttgccttcttccctgtgctcctttc 89855
>ref|XM_456588.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A06138g) partial mRNA Length = 2949 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ttgattgaggagtcaataacg 123 ||||||||||||||||||||| Sbjct: 2521 ttgattgaggagtcaataacg 2501
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ttgattgaggagtcaataacg 123 ||||||||||||||||||||| Sbjct: 497272 ttgattgaggagtcaataacg 497252
>gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, complete sequence Length = 168872 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gagggtgtggctgatggtgg 58 |||||||||||||||||||| Sbjct: 65760 gagggtgtggctgatggtgg 65779
>gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, complete sequence Length = 173759 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gagggtgtggctgatggtgg 58 |||||||||||||||||||| Sbjct: 4967 gagggtgtggctgatggtgg 4986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,741,659 Number of Sequences: 3902068 Number of extensions: 1741659 Number of successful extensions: 27783 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27742 Number of HSP's gapped (non-prelim): 33 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)