Clone Name | rbasd1m05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY162186.1| Triticum monococcum extracellular invertase (exin1) mRNA, complete cds Length = 2279 Score = 569 bits (287), Expect = e-159 Identities = 391/419 (93%), Gaps = 5/419 (1%) Strand = Plus / Minus Query: 312 ccatccatccaccgagcgaaaacccagctcccgaatcctaataggcttgagctccgctca 371 |||||| ||||||| |||||||||||||||| ||||||||||||||||||| | ||||| Sbjct: 1860 ccatccgtccaccgtgcgaaaacccagctccgaaatcctaataggcttgagccctgctca 1801 Query: 372 ccgagctcgccgcgatcagcccgtcggggagcacgttcacggtcgccgtcgccatctccc 431 |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| Sbjct: 1800 ccgagctcgccgcgatcagctcgtcggggaggacgttcacggtcgccgtggccatctccc 1741 Query: 432 acgcgtcgaggctggacaccttgacggcgccggtgcccgttgttgaacacgtacaggtgg 491 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1740 acgcgtcgaggctggacaccttgacggcgccggtg-ccgttgttgaacacgtacaggtgg 1682 Query: 492 ctgttgccgttcacgacgtggtccgggtacacccttcgccgtgatgcacgtcctgccgcc 551 |||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| Sbjct: 1681 ctgttgccgttcacgacgtggtccgggtacaccc-tcgccgtgatgcacgcccggccgcc 1623 Query: 552 gccgccgaagctctccaccaccgagtggtcgaccagtgttctgagcgagatgctgccccc 611 |||||||||||||||||||||||||||||| ||||| |||||||| |||||| | || || Sbjct: 1622 gccgccgaagctctccaccaccgagtggtcaaccagcgttctgagggagatgatcccgcc 1563 Query: 612 ttgcgcctcgatgtccatgtccacgaaggccccgtacggcgggcttgtacacgccgtctc 671 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | Sbjct: 1562 gtgcgcctcgatgtccatgtccacgaaggccccgtatggc-ggcttgtacacgccgtccc 1504 Query: 672 tggtgctcgacttcgagagggtcggtgcacatgagcaccttgtactttgtcgttctgcc 730 ||||||||||| | |||| |||||||||||||||| ||||||||| ||||||||||||| Sbjct: 1503 tggtgctcgaccttgaga-ggtcggtgcacatgaggaccttgtac-ttgtcgttctgcc 1447 Score = 220 bits (111), Expect = 5e-54 Identities = 159/176 (90%), Gaps = 8/176 (4%) Strand = Plus / Minus Query: 155 aacacctaaacacaaatattcctacaatctttttcctttgcagcatcctagaatcctcct 214 |||||||| |||||||| ||| || |||||||||||||||||||||||||||||||| || Sbjct: 2037 aacacctagacacaaatcttcttagaatctttttcctttgcagcatcctagaatccttct 1978 Query: 215 tctgtgctgttctggcaaac--------aatgagggagcctccatttgtacacctgagcc 266 |||||||||||| | |||| |||||||||||||||||||||||||||||||| Sbjct: 1977 tctgtgctgttccgagaaacaatgactcaatgagggagcctccatttgtacacctgagcc 1918 Query: 267 acaattgggcaggcaaatccaatcggccgtagaaattcacaatggccatccatcca 322 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1917 acaattgggcaggcaaatccaatcggccgtggaaattcacaatggccatccatcca 1862 Score = 89.7 bits (45), Expect = 1e-14 Identities = 98/112 (87%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 1 ttattttgtacaactcaacggntatcatacttttacatgacacccgttttcaccttggna 60 ||||||| ||||||||||| | |||||||| |||||| ||| |||||||||||||||| | Sbjct: 2227 ttattttttacaactcaactgatatcatacatttacaggacgcccgttttcaccttgg-a 2169 Query: 61 aatacactc-taaactgatgcc-aacgcccatcatgcagggcatgcgtgcta 110 ||||||||| ||| ||||||| || |||| |||||||||||||||||||| Sbjct: 2168 aatacactcttaatttgatgccaaatacccaacatgcagggcatgcgtgcta 2117
>ref|XM_450319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2098 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1843 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1784 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 1783 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 1725 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 1724 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 1668
>gb|AY575555.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 8 mRNA, partial cds Length = 348 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 217 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 158 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 157 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 99 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 98 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 42
>gb|AY578164.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 7 mRNA, complete cds Length = 2076 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1821 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1762 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 1761 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 1703 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 1702 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 1646
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 4116475 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 4116416 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 4116415 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 4116357 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 4116356 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 4116300 Score = 107 bits (54), Expect = 5e-20 Identities = 149/178 (83%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 4144369 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 4144310 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 4144309 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 4144251 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 4144250 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 4144194
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 99956 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 99897 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 99896 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 99838 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 99837 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 99781 Score = 107 bits (54), Expect = 5e-20 Identities = 149/178 (83%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 127850 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 127791 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 127790 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 127732 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 127731 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 127675
>dbj|AK069080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I08, full insert sequence Length = 2101 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 1846 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacggcgtcg 1787 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 1786 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 1728 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 1727 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 1671
>gb|AF155121.1|AF155121 Oryza sativa subsp. indica apoplastic invertase (INV1) gene, complete cds Length = 7783 Score = 115 bits (58), Expect = 2e-22 Identities = 150/178 (84%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| |||||| || Sbjct: 6930 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttcacggcgtcg 6871 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 6870 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 6812 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 6811 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 6755
>gb|AY578165.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 8 pseudogene mRNA, complete sequence Length = 1353 Score = 107 bits (54), Expect = 5e-20 Identities = 149/178 (83%), Gaps = 2/178 (1%) Strand = Plus / Minus Query: 404 acgttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccg 463 ||||| |||||||||||||||| |||||||| || || ||| |||||| ||| || || Sbjct: 1283 acgttgacggtcgccgtcgccaggtcccacgcctccagcttggccaccttaacgtcgtcg 1224 Query: 464 gtgcccgttgttgaacacgtacaggtggctgttgccgttcacgacgtggtccgggtacac 523 | |||||||||||||||||||| |||||| ||| || | ||||| |||||||| || Sbjct: 1223 ct-cccgttgttgaacacgtacaaatggctgctgctcgtcgccacgtgctccgggtaaac 1165 Query: 524 ccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtc 581 || |||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 1164 ccg-cgccgtgatgcacgcccgcccgccgccgccgaagctctccaccaccgaatggtc 1108
>gb|AY575552.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 5 mRNA, partial cds Length = 506 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttc 592 ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |||| Sbjct: 328 tgatgcacgccctgccgccgccgccgaagctctccaccgccgaccggtcgatcagagttc 269 Query: 593 t 593 | Sbjct: 268 t 268
>gb|AY578161.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 4 mRNA, complete cds Length = 2042 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttc 592 ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |||| Sbjct: 1689 tgatgcacgccctgccgccgccgccgaagctctccaccgccgaccggtcgatcagagttc 1630 Query: 593 t 593 | Sbjct: 1629 t 1629
>dbj|AB154521.1| Oryza sativa (japonica cultivar-group) OsCIN4 mRNA for cell wall invertase, complete cds Length = 2068 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttc 592 ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |||| Sbjct: 1683 tgatgcacgccctgccgccgccgccgaagctctccaccgccgaccggtcgatcagagttc 1624 Query: 593 t 593 | Sbjct: 1623 t 1623
>dbj|AK067444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F12, full insert sequence Length = 2100 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttc 592 ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |||| Sbjct: 1747 tgatgcacgccctgccgccgccgccgaagctctccaccgccgaccggtcgatcagagttc 1688 Query: 593 t 593 | Sbjct: 1687 t 1687
>dbj|AK061744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F09, full insert sequence Length = 1318 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttc 592 ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |||| Sbjct: 951 tgatgcacgccctgccgccgccgccgaagctctccaccgccgaccggtcgatcagagttc 892 Query: 593 t 593 | Sbjct: 891 t 891
>ref|NM_189408.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 1249 tgatgcacgccctgccgccgccgccgaagctctccaccgccga 1207
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 42622357 tgatgcacgccctgccgccgccgccgaagctctccaccgccga 42622315
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 69.9 bits (35), Expect = 1e-08 Identities = 41/43 (95%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 143240 tgatgcacgccctgccgccgccgccgaagctctccaccgccga 143198
>ref|XM_474246.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1545 Score = 65.9 bits (33), Expect = 2e-07 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 406 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggt 465 ||||||||||||||| |||||||||||||| ||||| ||||||| || || | ||| | Sbjct: 1509 gttcacggtcgccgtggccatctcccacgcctcgagcttggacacattcaccgtgcctg- 1451 Query: 466 gcccgttgttgaacacgtacaggtg 490 ||| |||||||||||||||||||| Sbjct: 1450 acccattgttgaacacgtacaggtg 1426 Score = 52.0 bits (26), Expect = 0.003 Identities = 62/74 (83%) Strand = Plus / Minus Query: 532 gtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgtt 591 |||||||||| | ||| ||||| ||||||||||| | || ||||||||| | ||||||| Sbjct: 1385 gtgatgcacgctcggccaccgcctccgaagctctcaatcatcgagtggtcaatcagtgtt 1326 Query: 592 ctgagcgagatgct 605 ||||| || ||||| Sbjct: 1325 ctgagtgatatgct 1312
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 65.9 bits (33), Expect = 2e-07 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 406 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggt 465 ||||||||||||||| |||||||||||||| ||||| ||||||| || || | ||| | Sbjct: 28897 gttcacggtcgccgtggccatctcccacgcctcgagcttggacacattcaccgtgcctg- 28955 Query: 466 gcccgttgttgaacacgtacaggtg 490 ||| |||||||||||||||||||| Sbjct: 28956 acccattgttgaacacgtacaggtg 28980 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Plus Query: 471 ttgttgaacacgtacaggtggctg 494 |||||||||||||||||||||||| Sbjct: 25825 ttgttgaacacgtacaggtggctg 25848
>gb|AY575553.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 6-like mRNA, partial sequence Length = 506 Score = 65.9 bits (33), Expect = 2e-07 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 406 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggt 465 ||||||||||||||| |||||||||||||| ||||| ||||||| || || | ||| | Sbjct: 436 gttcacggtcgccgtggccatctcccacgcctcgagcttggacacattcaccgtgcctg- 378 Query: 466 gcccgttgttgaacacgtacaggtg 490 ||| |||||||||||||||||||| Sbjct: 377 acccattgttgaacacgtacaggtg 353 Score = 52.0 bits (26), Expect = 0.003 Identities = 62/74 (83%) Strand = Plus / Minus Query: 532 gtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgtt 591 |||||||||| | ||| ||||| ||||||||||| | || ||||||||| | ||||||| Sbjct: 312 gtgatgcacgctcggccaccgcctccgaagctctcaatcatcgagtggtcaatcagtgtt 253 Query: 592 ctgagcgagatgct 605 ||||| || ||||| Sbjct: 252 ctgagtgatatgct 239
>gb|AY578162.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 5 mRNA, complete cds Length = 1731 Score = 65.9 bits (33), Expect = 2e-07 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 406 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggt 465 ||||||||||||||| |||||||||||||| ||||| ||||||| || || | ||| | Sbjct: 1545 gttcacggtcgccgtggccatctcccacgcctcgagcttggacacattcaccgtgcctg- 1487 Query: 466 gcccgttgttgaacacgtacaggtg 490 ||| |||||||||||||||||||| Sbjct: 1486 acccattgttgaacacgtacaggtg 1462 Score = 52.0 bits (26), Expect = 0.003 Identities = 62/74 (83%) Strand = Plus / Minus Query: 532 gtgatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgtt 591 |||||||||| | ||| ||||| ||||||||||| | || ||||||||| | ||||||| Sbjct: 1421 gtgatgcacgctcggccaccgcctccgaagctctcaatcatcgagtggtcaatcagtgtt 1362 Query: 592 ctgagcgagatgct 605 ||||| || ||||| Sbjct: 1361 ctgagtgatatgct 1348
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 2e-07 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 406 gttcacggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggt 465 ||||||||||||||| |||||||||||||| ||||| ||||||| || || | ||| | Sbjct: 33978000 gttcacggtcgccgtggccatctcccacgcctcgagcttggacacattcaccgtgcctg- 33978058 Query: 466 gcccgttgttgaacacgtacaggtg 490 ||| |||||||||||||||||||| Sbjct: 33978059 acccattgttgaacacgtacaggtg 33978083 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Plus Query: 471 ttgttgaacacgtacaggtggctg 494 |||||||||||||||||||||||| Sbjct: 33974928 ttgttgaacacgtacaggtggctg 33974951 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 20423630 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 20423581
>gb|AY111968.1| Zea mays CL1139_-3 mRNA sequence Length = 2057 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgt 590 |||||||||||||||||| ||||||||||||||||||| ||| | |||| |||||| Sbjct: 1739 gatgcacgtcctgccgcccgcgccgaagctctccaccacggagggttcgatcagtgt 1683
>gb|AF043728.1|AF043728 Zea mays cell wall invertase Incw3 mRNA, partial cds Length = 217 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgt 590 |||||||||||||||||| ||||||||||||||||||| ||| | |||| |||||| Sbjct: 73 gatgcacgtcctgccgcccgcgccgaagctctccaccacggagggttcgatcagtgt 17
>gb|AF043346.1|AF043346 Zea mays cell wall invertase (incw3) gene, complete cds Length = 6997 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccac 572 |||||||||||||||||| ||||||||||||||||||| Sbjct: 4383 gatgcacgtcctgccgcccgcgccgaagctctccaccac 4345
>dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrolase, complete cds Length = 2319 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 529 gccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 ||||||||||| ||||||| |||| |||||||||||||||| |||| Sbjct: 1745 gccgtgatgcagatcctgccaccgctgccgaagctctccaccgccga 1699
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Plus Query: 537 gcacgtcctgccgccgccgccgaagc 562 |||||||||||||||||||||||||| Sbjct: 28362978 gcacgtcctgccgccgccgccgaagc 28363003
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Plus Query: 537 gcacgtcctgccgccgccgccgaagc 562 |||||||||||||||||||||||||| Sbjct: 88541 gcacgtcctgccgccgccgccgaagc 88566
>emb|AJ516025.1|TAE516025 Triticum aestivum mRNA for fructan 1-exohydrolase w1 precursor (1-FEH w1 gene) Length = 2101 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 543 cctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttctgag 596 |||||| ||||||||||||||||||||| |||| |||| | ||| |||||||| Sbjct: 1632 cctgccaccgccgccgaagctctccaccgccgaccggtcaatcagagttctgag 1579
>ref|XM_474245.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 471 ttgttgaacacgtacaggtggctg 494 |||||||||||||||||||||||| Sbjct: 1658 ttgttgaacacgtacaggtggctg 1635
>gb|AY302084.1| Saccharum hybrid cultivar cell wall invertase (Shcw1) mRNA, partial cds Length = 1889 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 690 gggtcggtgcacatgagcaccttg 713 |||||||||||||||||||||||| Sbjct: 1307 gggtcggtgcacatgagcaccttg 1284 Score = 46.1 bits (23), Expect = 0.16 Identities = 35/39 (89%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccac 572 |||||||||| |||| || ||||||||||||||||||| Sbjct: 1455 gatgcacgtcttgcctcccgcgccgaagctctccaccac 1417
>gb|AY575554.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 7-like mRNA, partial sequence Length = 397 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 471 ttgttgaacacgtacaggtggctg 494 |||||||||||||||||||||||| Sbjct: 271 ttgttgaacacgtacaggtggctg 248
>gb|AY578163.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 6 mRNA, complete cds Length = 1926 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 471 ttgttgaacacgtacaggtggctg 494 |||||||||||||||||||||||| Sbjct: 1733 ttgttgaacacgtacaggtggctg 1710
>gb|U17695.1|ZMU17695 Zea mays cell wall invertase mRNA, complete cds Length = 2149 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 690 gggtcggtgcacatgagcaccttg 713 |||||||||||||||||||||||| Sbjct: 1526 gggtcggtgcacatgagcaccttg 1503
>gb|AY110034.1| Zea mays CL1139_2 mRNA sequence Length = 2161 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 690 gggtcggtgcacatgagcaccttg 713 |||||||||||||||||||||||| Sbjct: 1538 gggtcggtgcacatgagcaccttg 1515
>gb|AF050129.1|AF050129 Zea mays cell wall invertase Incw1 gene, complete cds Length = 5364 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 690 gggtcggtgcacatgagcaccttg 713 |||||||||||||||||||||||| Sbjct: 3503 gggtcggtgcacatgagcaccttg 3480
>emb|AM075205.1| Triticum aestivum mRNA for fructan 6-exohydrolase (6-FEH gene) Length = 1797 Score = 48.1 bits (24), Expect = 0.041 Identities = 97/120 (80%), Gaps = 1/120 (0%) Strand = Plus / Minus Query: 516 gggtacacccttcgccgtgatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||||||| | ||||||||||| |||| ||| || || || ||||| ||||| ||||| Sbjct: 1670 gggtacacccgt-gccgtgatgcatgtccggcccccacctccaaagctttccactaccga 1612 Query: 576 gtggtcgaccagtgttctgagcgagatgctgcccccttgcgcctcgatgtccatgtccac 635 ||||| | || |||||| || || ||| | | ||||||| ||||||||| |||||||| Sbjct: 1611 atggtcaatcaatgttctaagagatatggtcctcccttgctgctcgatgtctatgtccac 1552
>ref|XM_472408.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1752 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 1614 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 1565
>ref|XM_469625.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1098 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 938 ccgaagctctccaccaccgagtg 916
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 29858768 ccgaagctctccaccaccgagtg 29858746
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 151837 ccgaagctctccaccaccgagtg 151859
>gb|AY342320.1| Oryza sativa (indica cultivar-group) cell wall invertase 3 (CIN3) mRNA, complete cds Length = 1761 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 1623 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 1574
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 37050 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 37001
>gb|AY575551.1| Oryza sativa (indica cultivar-group) cell wall invertase 4 mRNA, partial cds Length = 300 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 109 ccgaagctctccaccaccgagtg 87
>gb|AY575550.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 3 mRNA, partial cds Length = 324 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 171 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 122
>gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 3 mRNA, complete cds Length = 1911 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 1650 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 1601
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 24709 ccgaagctctccaccaccgagtg 24687
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 29950190 ccgaagctctccaccaccgagtg 29950168
>gb|AY220486.1| Oryza sativa (indica cultivar-group) apoplastic invertase (INV4) gene, complete cds Length = 3848 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 3327 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 3278
>gb|AF043347.1|AF043347 Zea mays cell wall invertase (incw4) gene, complete cds Length = 5535 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 5019 ccgaagctctccaccaccgagtg 4997 Score = 42.1 bits (21), Expect = 2.5 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 410 acggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggtgccc 469 |||||||||| ||| | |||||| || ||||| ||||||||| || | ||| ||||| Sbjct: 5163 acggtcgccgccgcgagctcccatgcctcgagcttggacacctccaccgtgcctgtgcca 5104 Query: 470 gttgttgaacacgtacaggtggctgttgc 498 |||||||||||| ||| ||||||||||| Sbjct: 5103 -ttgttgaacacgaacatgtggctgttgc 5076
>dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full insert sequence Length = 2289 Score = 46.1 bits (23), Expect = 0.16 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgc-cgccgccgaagctctccaccaccgagtggtcga 583 |||||||||| |||||| |||| ||||||||||||||||| ||||| |||| Sbjct: 1684 gatgcacgtcttgccgcgcgcc-ccgaagctctccaccacggagtgatcga 1635
>gb|AY110858.1| Zea mays CL1272_1 mRNA sequence Length = 2233 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 1866 ccgaagctctccaccaccgagtg 1844 Score = 42.1 bits (21), Expect = 2.5 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 410 acggtcgccgtcgccatctcccacgcgtcgaggctggacaccttgacggcgccggtgccc 469 |||||||||| ||| | |||||| || ||||| ||||||||| || | ||| ||||| Sbjct: 2010 acggtcgccgccgcgagctcccatgcctcgagcttggacacctccaccgtgcctgtgcca 1951 Query: 470 gttgttgaacacgtacaggtggctgttgc 498 |||||||||||| ||| ||||||||||| Sbjct: 1950 -ttgttgaacacgaacatgtggctgttgc 1923
>gb|AF043729.1|AF043729 Zea mays cell wall invertase Incw4 mRNA, partial cds Length = 381 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 556 ccgaagctctccaccaccgagtg 578 ||||||||||||||||||||||| Sbjct: 278 ccgaagctctccaccaccgagtg 256
>ref|XM_464363.1| Oryza sativa (japonica cultivar-group), mRNA Length = 297 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Plus Query: 546 gccgccgccgccgaagctctccaccaccga 575 |||||||| |||||||||||||||| |||| Sbjct: 96 gccgccgctgccgaagctctccaccgccga 125
>gb|AY342319.1| Oryza sativa (indica cultivar-group) cell wall invertase 1 (CIN1) mRNA, complete cds Length = 1734 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 1599 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 1558
>gb|AF030421.1| Triticum aestivum cell wall invertase (IVR3) mRNA, partial cds Length = 1563 Score = 44.1 bits (22), Expect = 0.64 Identities = 46/54 (85%) Strand = Plus / Minus Query: 543 cctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttctgag 596 |||||| |||||||||||| |||||||| |||| |||| | ||| |||||||| Sbjct: 1257 cctgccaccgccgccgaagttctccaccgccgaccggtcaatcagagttctgag 1204
>gb|AY575548.1| Oryza sativa (indica cultivar-group) cultivar IR64 cell wall invertase 1-like mRNA, partial sequence Length = 528 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 226 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 185
>gb|AY578158.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 1 mRNA, complete cds Length = 2129 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 1613 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 1572
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 19706116 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 19706075 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Plus Query: 546 gccgccgccgccgaagctctccaccaccga 575 |||||||| |||||||||||||||| |||| Sbjct: 4732051 gccgccgctgccgaagctctccaccgccga 4732080
>emb|AJ564996.1|TAE564996 Triticum aestivum mRNA for fructan 1-exohydrolase w3 precursor (1-FEH w3 gene) Length = 2108 Score = 44.1 bits (22), Expect = 0.64 Identities = 46/54 (85%) Strand = Plus / Minus Query: 543 cctgccgccgccgccgaagctctccaccaccgagtggtcgaccagtgttctgag 596 |||||| ||||| ||||||||||||||| |||| |||| | ||| |||||||| Sbjct: 1696 cctgccaccgccaccgaagctctccaccgccgaccggtcaatcagagttctgag 1643
>gb|AF165181.1|AF165181 Zea mays cultivar miniature 1-1 cell wall invertase (Incw) mRNA, partial cds Length = 1754 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 1470 agggtcggtgcacatgagcacc 1449
>gb|AF165180.1|AF165180 Zea mays cultivar mn1-89 cell wall invertase 2 (Incw2) mRNA, complete cds Length = 2027 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 1533 agggtcggtgcacatgagcacc 1512
>gb|AF165179.1|AF165179 Zea mays cultivar W22 inbred cell wall invertase 2 (Incw2) mRNA, complete cds Length = 2027 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 1533 agggtcggtgcacatgagcacc 1512
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Plus Query: 546 gccgccgccgccgaagctctccaccaccga 575 |||||||| |||||||||||||||| |||| Sbjct: 12641 gccgccgctgccgaagctctccaccgccga 12670
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 14667 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 14626
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 62874 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 62833
>gb|AE005048.1| Halobacterium sp. NRC-1 section 79 of 170 of the complete genome Length = 10225 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 366 cgctcaccgagctcgccgcgatcagc 391 ||||| |||||||||||||||||||| Sbjct: 1002 cgctcgccgagctcgccgcgatcagc 1027
>dbj|AK121403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A09, full insert sequence Length = 2103 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 1663 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 1622
>gb|AF050631.1|AF050631 Zea mays invertase mRNA, complete cds Length = 2036 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 1548 agggtcggtgcacatgagcacc 1527
>gb|AY110035.1| Zea mays CL1139_1 mRNA sequence Length = 2025 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 1550 agggtcggtgcacatgagcacc 1529
>gb|AY106676.1| Zea mays PCO093097 mRNA sequence Length = 1020 Score = 44.1 bits (22), Expect = 0.64 Identities = 34/38 (89%) Strand = Plus / Minus Query: 533 tgatgcacgtcctgccgccgccgccgaagctctccacc 570 |||||||| ||||||||| || ||||||||||||||| Sbjct: 738 tgatgcacaccctgccgcctccaccgaagctctccacc 701
>gb|AF050128.1|AF050128 Zea mays cell wall invertase Incw2 gene, complete cds Length = 4412 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 689 agggtcggtgcacatgagcacc 710 |||||||||||||||||||||| Sbjct: 2405 agggtcggtgcacatgagcacc 2384
>dbj|AB073749.1| Oryza sativa (japonica cultivar-group) OsCIN1 mRNA for cell wall invertase, complete cds Length = 2203 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 534 gatgcacgtcctgccgccgccgccgaagctctccaccaccga 575 |||||| ||| |||| ||| ||||||||||||| |||||||| Sbjct: 1658 gatgcaggtcttgcccccggcgccgaagctctcaaccaccga 1617
>ref|NM_195732.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0073L20.21), mRNA Length = 306 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 548 cgccgccgccgaagctctcca 568 ||||||||||||||||||||| Sbjct: 248 cgccgccgccgaagctctcca 268
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ccgccgaagctctccaccacc 573 ||||||||||||||||||||| Sbjct: 69710 ccgccgaagctctccaccacc 69690
>gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, complete sequence Length = 147194 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 atcaaaaccttccaacaccta 162 ||||||||||||||||||||| Sbjct: 138903 atcaaaaccttccaacaccta 138923
>ref|XM_754164.1| Ustilago maydis 521 hypothetical protein (UM03110.1) partial mRNA Length = 1521 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 420 tcgccatctcccacgcgtcgaggct 444 ||||||||||||||| ||||||||| Sbjct: 136 tcgccatctcccacgggtcgaggct 160
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence Length = 211178 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tccaacacctaaacacaaata 172 ||||||||||||||||||||| Sbjct: 109259 tccaacacctaaacacaaata 109239
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 cgcgatcagcccgtcggggag 402 ||||||||||||||||||||| Sbjct: 153431 cgcgatcagcccgtcggggag 153411
>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the gene for an ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 (ALS2CR19), the 3' end of a novel gene and two CpG islands, complete sequence Length = 216046 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 atcaaaaccttccaacaccta 162 ||||||||||||||||||||| Sbjct: 201195 atcaaaaccttccaacaccta 201215
>emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chromosome 1 Contains part of the ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 ALS2CR19 (2810455B10RIK 6030439I24RIK 2010002N16RIK), and the 3' end of a novel gene (4930448K12RIK 4930412B09RIK), complete sequence Length = 140936 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 atcaaaaccttccaacaccta 162 ||||||||||||||||||||| Sbjct: 128291 atcaaaaccttccaacaccta 128311
>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence Length = 164213 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 tccaacacctaaacacaaata 172 ||||||||||||||||||||| Sbjct: 109329 tccaacacctaaacacaaata 109309
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 cgccgccgccgaagctctcca 568 ||||||||||||||||||||| Sbjct: 117020 cgccgccgccgaagctctcca 117000
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 cgccgccgccgaagctctcca 568 ||||||||||||||||||||| Sbjct: 8726379 cgccgccgccgaagctctcca 8726359
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ccgccgaagctctccaccacc 573 ||||||||||||||||||||| Sbjct: 19265635 ccgccgaagctctccaccacc 19265615
>dbj|AK101551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O15, full insert sequence Length = 1127 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ccgccgaagctctccaccacc 573 ||||||||||||||||||||| Sbjct: 299 ccgccgaagctctccaccacc 279
>dbj|AK073623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N15, full insert sequence Length = 1127 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ccgccgaagctctccaccacc 573 ||||||||||||||||||||| Sbjct: 299 ccgccgaagctctccaccacc 279
>dbj|AK060876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A04, full insert sequence Length = 1014 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ccgccgaagctctccaccacc 573 ||||||||||||||||||||| Sbjct: 115 ccgccgaagctctccaccacc 95
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 cgccgccgccgaagctctcca 568 ||||||||||||||||||||| Sbjct: 8731518 cgccgccgccgaagctctcca 8731498 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,645,778 Number of Sequences: 3902068 Number of extensions: 5645778 Number of successful extensions: 121365 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119733 Number of HSP's gapped (non-prelim): 1607 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)