ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1m04 |
|---|---|
| Clone Library Name | barley_pub |
>F100A_HUMAN (Q8TB05) Protein FAM100A| Length = 177 Score = 34.3 bits (77), Expect = 0.40 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Frame = +1 Query: 145 HQLSPTKRREVHTPPNCTAKLT-------SHAFSSTGAASSPCLSFCSPIPHLPHGGNRG 303 HQ+ T TPPN LT S +F S G+ S + SP PH PH Sbjct: 59 HQMMCTPANTPATPPNFPDALTMFSRLKASESFHSGGSGSPMAATATSPPPHFPHAATSS 118 Query: 304 AMA 312 + A Sbjct: 119 SAA 121
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 33.9 bits (76), Expect = 0.52 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = +1 Query: 145 HQLSPTKRREVHTPPNCTAKLT-------SHAFSSTGAASSP-CLSFCSPIPHLPH 288 HQ+ T TPPN LT S +F S G++ SP S SP PH PH Sbjct: 58 HQMMCTPANTPATPPNFPDALTMFSRLKASESFHSGGSSGSPMATSATSPPPHFPH 113
>LRAT_HUMAN (O95237) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 33.5 bits (75), Expect = 0.68 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -1 Query: 634 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 527 +E V RRA LL GF Y + NCE F YC+ G Sbjct: 138 NEEVARRAEKLL--GFTPYSLLWNNCEHFVTYCRYG 171
>F100A_MOUSE (Q6P3B2) Protein FAM100A| Length = 176 Score = 33.5 bits (75), Expect = 0.68 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Frame = +1 Query: 145 HQLSPTKRREVHTPPNCTAKLT-------SHAFSSTGAASSP-CLSFCSPIPHLPH 288 HQ+ T TPPN LT S +F G +SSP S SP PH PH Sbjct: 58 HQMMCTPANTPATPPNFPDALTMFSRLKASESFHGGGGSSSPMATSATSPPPHFPH 113
>YEG9_SCHPO (O13991) Hypothetical oxidoreductase C26H5.09c (EC 1.-.-.-)| Length = 369 Score = 33.1 bits (74), Expect = 0.89 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Frame = -1 Query: 724 PSTALSMECHQQFSLAKFRGGTCTIAQSDPSEAVVRRAMHLLQNG-FGNYDIFEKNCEDF 548 P T E + F LAK + T+ Q+ + A ++NG G FE + + F Sbjct: 100 PFTPTYGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQFESHIDRF 159 Query: 547 ALYCKTGLVPVDEPGIGVSGQASSAIGVPLAALLSTPFKIFA 422 L+ K V PG G+ S + L TP + A Sbjct: 160 RLFRKGNWKDVPNPGCGLVYDLGSHLIDQAITLFGTPHSVTA 201
>RISC_RAT (Q920A6) Retinoid-inducible serine carboxypeptidase precursor (EC| 3.4.16.-) (Serine carboxypeptidase 1) Length = 452 Score = 31.6 bits (70), Expect = 2.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 161 VGDSWCRPVDNIESMLQYIISLIYIDNNVAVKRAXHVECALHMMN 27 +GDSW PVD++ S Y+ S+ +DN + + E L+ +N Sbjct: 198 LGDSWISPVDSVLSWGPYLYSVSLLDNKGLAEVSDIAEQVLNAVN 242
>RYR2_RABIT (P30957) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) Length = 4969 Score = 31.2 bits (69), Expect = 3.4 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +2 Query: 269 RFRIFRTAET-EVRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRTGSENLEWGG 445 RFRIFR +T V+ ++ F + S GD+ G PGC + + G Sbjct: 1084 RFRIFRAEKTYAVKAGRWYFEFEAVTS----GDMRVGWSRPGCQPDQELGSDERAFAFDG 1139 Query: 446 QKSCQWH 466 K+ +WH Sbjct: 1140 FKAQRWH 1146
>ACSA1_ACEXY (P21877) Cellulose synthase 1 [Includes: Cellulose synthase catalytic| domain [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 1 regulatory domain)] Length = 1550 Score = 30.4 bits (67), Expect = 5.8 Identities = 33/120 (27%), Positives = 47/120 (39%) Frame = +3 Query: 126 DIIHRSAPTIADEAQGGSYSPKLYRQAHLSRFLFNGSSFVTLSELLFTDSASSARRKPRC 305 DI+HRS+PT G + S + R L V+L LL S++ A PR Sbjct: 706 DIVHRSSPT--KPLAGNALSDDTNNPSRKERVLKGTVKMVSLLALLTFASSAQAASAPRA 763 Query: 306 DGRXXXXXXXXXXXXPMSVMYLPAQYIPAVTVAIPSGPAAKILNGVDRRAASGTPMAEDA 485 P LPA +PA + A +G NG + +G P+A D+ Sbjct: 764 VAAKAPAHQPEASDLPP----LPA-LLPATSGAAQAGAGDAGANGPG--SPTGQPLAADS 816
>RISC_MOUSE (Q920A5) Retinoid-inducible serine carboxypeptidase precursor (EC| 3.4.16.-) (Serine carboxypeptidase 1) Length = 452 Score = 30.4 bits (67), Expect = 5.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 161 VGDSWCRPVDNIESMLQYIISLIYIDN 81 +GDSW PVD++ S Y+ S+ +DN Sbjct: 198 LGDSWISPVDSVLSWGPYLYSMSLLDN 224
>POL1_BAYMG (Q04574) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein| 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro); Nuclea Length = 2412 Score = 30.4 bits (67), Expect = 5.8 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +3 Query: 429 ILNGVDRRAASGTPMAEDACPLTPMPGSSTGTSPVLQ*SA 548 + V RR + TPMAE+ P +PM S+ +P L SA Sbjct: 5 LAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSA 44
>CEA9_ECOLI (P09883) Colicin-E9 (EC 3.1.-.-)| Length = 582 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 344 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 478 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGIGVSGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = +3 Query: 387 PAVTVAIPSGPAAKILN---GVDRRAASGTPMAEDACPLTPMPGSSTGTSP 530 P +T IP P + GV+RR + G P +DA P+T S+ +P Sbjct: 1281 PPITAPIPPVPKPRTFQPGRGVERRPSGGKPEPDDAPPVTGAVELSSPEAP 1331
>RYR2_HUMAN (Q92736) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) (hRYR-2) Length = 4967 Score = 30.0 bits (66), Expect = 7.5 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +2 Query: 269 RFRIFRTAET-EVRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRTGSENLEWGG 445 RFRIFR +T V+ ++ F + + GD+ G PGC + + G Sbjct: 1084 RFRIFRAEKTYAVKAGRWYFEFETVTA----GDMRVGWSRPGCQPDQELGSDERAFAFDG 1139 Query: 446 QKSCQWH 466 K+ +WH Sbjct: 1140 FKAQRWH 1146
>CEA2_ECOLI (P04419) Colicin-E2 (EC 3.1.-.-)| Length = 581 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 344 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 478 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CADA_BACPF (P30336) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 723 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -1 Query: 490 GQASSAIGVPLAALLSTPFKIFAAGPLGMATVTAGMYCAGRYITDIGVRKDVA 332 G A +G P A ++STP I +A +G A + G Y+ ++G K +A Sbjct: 360 GLAVLVVGCPCALVISTPISIVSA--IGNAAKKGVLVKGGVYLEEMGALKAIA 410
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 9.8 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 383 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 478 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 9.8 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 383 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 478 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 9.8 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 383 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 478 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 9.8 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 383 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 478 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>LRAT_BOVIN (Q9BGL2) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 29.6 bits (65), Expect = 9.8 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 634 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 527 +E V +RA LL G Y + NCE F YC+ G Sbjct: 138 NEEVAQRAEKLL--GITPYSLLWNNCEHFVTYCRYG 171
>GCNT1_HUMAN (Q02742) Beta-1,3-galactosyl-O-glycosyl-glycoprotein| beta-1,6-N-acetylglucosaminyltransferase (EC 2.4.1.102) (Core 2 branching enzyme) (Core2-GlcNAc-transferase) (C2GNT) (Core 2 GNT) Length = 428 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Frame = +2 Query: 302 VRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRT---GSENLEW 439 V+WQ F GDVS G +P CDG H + G+ +L W Sbjct: 354 VKWQYFE------------GDVSKGAPYPPCDGVHVRSVCIFGAGDLNW 390
>CEA6_ECOLI (P17999) Colicin-E6 (EC 3.1.-.-) (Ribonuclease)| Length = 551 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 344 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 478 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CEA3_ECOLI (P00646) Colicin-E3 (EC 3.1.-.-) (Colicin-E3 A chain)| (Ribonuclease) Length = 551 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +2 Query: 344 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 478 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CADA_STAAR (Q6GIX1) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 726 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -1 Query: 490 GQASSAIGVPLAALLSTPFKIFAAGPLGMATVTAGMYCAGRYITDIGVRKDVA 332 G A +G P A ++STP I +A +G A + G Y+ ++G K +A Sbjct: 362 GLAVLVVGCPCALVISTPISIVSA--IGNAAKKGVLIKGGVYLEELGAIKAIA 412 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,681,450 Number of Sequences: 219361 Number of extensions: 2541794 Number of successful extensions: 7909 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 7486 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7905 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7422931207 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
