Clone Name | rbasd1m04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 355 bits (179), Expect = 1e-94 Identities = 336/387 (86%), Gaps = 1/387 (0%) Strand = Plus / Plus Query: 333 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 392 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 20305004 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 20305063 Query: 393 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 452 ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| |||||||||||| Sbjct: 20305064 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 20305123 Query: 453 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 512 ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 20305124 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 20305183 Query: 513 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 572 || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 20305184 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 20305243 Query: 573 atgtcgtagttgccaaacccattttgaagcaagtgcatagctctccgaaccacagcctct 632 ||||| || || ||||| ||||||||||| |||| ||| ||||| | |||||| | ||| Sbjct: 20305244 atgtcataatttccaaagccattttgaagtaagtacatggctctgtgtaccacaacttct 20305303 Query: 633 gatgggtcggattgggcaatggtgcaggttcccccacgaaattttgcaagggaaaattgc 692 ||||| || ||||||||||||||||||||||||||||| | ||||||| |||||| || Sbjct: 20305304 gatggatctgattgggcaatggtgcaggttcccccacgcagctttgcaa-ggaaaacggc 20305362 Query: 693 tggtggcactccatactcaaagcagta 719 || ||||||||| ||||| |||||||| Sbjct: 20305363 tgatggcactccgtactcgaagcagta 20305389 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 tcacctctcacgctttctcttca 228 ||||||||||||||||||||||| Sbjct: 20304877 tcacctctcacgctttctcttca 20304899
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 355 bits (179), Expect = 1e-94 Identities = 336/387 (86%), Gaps = 1/387 (0%) Strand = Plus / Plus Query: 333 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 392 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 84131 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 84190 Query: 393 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 452 ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| |||||||||||| Sbjct: 84191 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 84250 Query: 453 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 512 ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 84251 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 84310 Query: 513 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 572 || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 84311 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 84370 Query: 573 atgtcgtagttgccaaacccattttgaagcaagtgcatagctctccgaaccacagcctct 632 ||||| || || ||||| ||||||||||| |||| ||| ||||| | |||||| | ||| Sbjct: 84371 atgtcataatttccaaagccattttgaagtaagtacatggctctgtgtaccacaacttct 84430 Query: 633 gatgggtcggattgggcaatggtgcaggttcccccacgaaattttgcaagggaaaattgc 692 ||||| || ||||||||||||||||||||||||||||| | ||||||| |||||| || Sbjct: 84431 gatggatctgattgggcaatggtgcaggttcccccacgcagctttgcaa-ggaaaacggc 84489 Query: 693 tggtggcactccatactcaaagcagta 719 || ||||||||| ||||| |||||||| Sbjct: 84490 tgatggcactccgtactcgaagcagta 84516 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 206 tcacctctcacgctttctcttca 228 ||||||||||||||||||||||| Sbjct: 84004 tcacctctcacgctttctcttca 84026
>dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full insert sequence Length = 1099 Score = 355 bits (179), Expect = 1e-94 Identities = 336/387 (86%), Gaps = 1/387 (0%) Strand = Plus / Minus Query: 333 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 392 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 762 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 703 Query: 393 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 452 ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| |||||||||||| Sbjct: 702 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 643 Query: 453 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 512 ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 642 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 583 Query: 513 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 572 || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 582 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 523 Query: 573 atgtcgtagttgccaaacccattttgaagcaagtgcatagctctccgaaccacagcctct 632 ||||| || || ||||| ||||||||||| |||| ||| ||||| | |||||| | ||| Sbjct: 522 atgtcataatttccaaagccattttgaagtaagtacatggctctgtgtaccacaacttct 463 Query: 633 gatgggtcggattgggcaatggtgcaggttcccccacgaaattttgcaagggaaaattgc 692 ||||| || ||||||||||||||||||||||||||||| | ||||||| |||||| || Sbjct: 462 gatggatctgattgggcaatggtgcaggttcccccacgcagctttgcaa-ggaaaacggc 404 Query: 693 tggtggcactccatactcaaagcagta 719 || ||||||||| ||||| |||||||| Sbjct: 403 tgatggcactccgtactcgaagcagta 377 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 206 tcacctctcacgctttctcttca 228 ||||||||||||||||||||||| Sbjct: 889 tcacctctcacgctttctcttca 867
>dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135P13, full insert sequence Length = 3195 Score = 355 bits (179), Expect = 1e-94 Identities = 336/387 (86%), Gaps = 1/387 (0%) Strand = Plus / Minus Query: 333 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 392 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 2668 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 2609 Query: 393 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 452 ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| |||||||||||| Sbjct: 2608 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 2549 Query: 453 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 512 ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 2548 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 2489 Query: 513 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 572 || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 2488 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 2429 Query: 573 atgtcgtagttgccaaacccattttgaagcaagtgcatagctctccgaaccacagcctct 632 ||||| || || ||||| ||||||||||| |||| ||| ||||| | |||||| | ||| Sbjct: 2428 atgtcataatttccaaagccattttgaagtaagtacatggctctgtgtaccacaacttct 2369 Query: 633 gatgggtcggattgggcaatggtgcaggttcccccacgaaattttgcaagggaaaattgc 692 ||||| || ||||||||||||||||||||||||||||| | ||||||| |||||| || Sbjct: 2368 gatggatctgattgggcaatggtgcaggttcccccacgcagctttgcaa-ggaaaacggc 2310 Query: 693 tggtggcactccatactcaaagcagta 719 || ||||||||| ||||| |||||||| Sbjct: 2309 tgatggcactccgtactcgaagcagta 2283 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 206 tcacctctcacgctttctcttca 228 ||||||||||||||||||||||| Sbjct: 2795 tcacctctcacgctttctcttca 2773
>dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H07, full insert sequence Length = 1044 Score = 355 bits (179), Expect = 1e-94 Identities = 336/387 (86%), Gaps = 1/387 (0%) Strand = Plus / Minus Query: 333 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacatcccggct 392 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct: 758 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacatcccagct 699 Query: 393 gtgacggtggccattcccagcggaccggcagcgaaaatcttgaatggggtggacagaaga 452 ||||| ||||||||||| || ||||| ||||| |||| ||| | ||| |||||||||||| Sbjct: 698 gtgacagtggccattccaagtggaccagcagcaaaaagcttaagtggagtggacagaaga 639 Query: 453 gctgccagtggcacgccaatggcggaagatgcttgcccgctcaccccaatgcctggttca 512 ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 638 gctgccaatggcactccaatggcggaagatgcttgcccacttgttccaatgccaggttcc 579 Query: 513 tccacaggtacaagtccagtcttgcagtagagtgcaaagtcctcgcaattcttctcgaat 572 || ||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 578 tcaacaggaagaagcccagttttgcagtagagtgcaaagtcctcgcaattgttctcaaat 519 Query: 573 atgtcgtagttgccaaacccattttgaagcaagtgcatagctctccgaaccacagcctct 632 ||||| || || ||||| ||||||||||| |||| ||| ||||| | |||||| | ||| Sbjct: 518 atgtcataatttccaaagccattttgaagtaagtacatggctctgtgtaccacaacttct 459 Query: 633 gatgggtcggattgggcaatggtgcaggttcccccacgaaattttgcaagggaaaattgc 692 ||||| || ||||||||||||||||||||||||||||| | ||||||| |||||| || Sbjct: 458 gatggatctgattgggcaatggtgcaggttcccccacgcagctttgcaa-ggaaaacggc 400 Query: 693 tggtggcactccatactcaaagcagta 719 || ||||||||| ||||| |||||||| Sbjct: 399 tgatggcactccgtactcgaagcagta 373 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 206 tcacctctcacgctttctcttca 228 ||||||||||||||||||||||| Sbjct: 885 tcacctctcacgctttctcttca 863
>gb|AY110920.1| Zea mays CL34388_1 mRNA sequence Length = 598 Score = 178 bits (90), Expect = 2e-41 Identities = 219/262 (83%) Strand = Plus / Minus Query: 292 ggaaaccgaggtgcgatggcaggttttccacctccactttggccacatcctttcttactc 351 |||||||| ||||||||| | || ||||| || ||||| || || ||||| ||||||| Sbjct: 268 ggaaaccggggtgcgatgataatttctccacttcaacttttgctacgtccttccttactc 209 Query: 352 ctatgtcggtgatgtatctaccggcacagtacatcccggctgtgacggtggccattccca 411 ||||||| || |||||||| || |||||||||||||| || ||||| ||||||||||| | Sbjct: 208 ctatgtcagtaatgtatctgccagcacagtacatcccagccgtgacagtggccattccaa 149 Query: 412 gcggaccggcagcgaaaatcttgaatggggtggacagaagagctgccagtggcacgccaa 471 ||||||| ||||| | || |||||| || ||||||||||||||||||| ||||| |||| Sbjct: 148 gcggaccagcagccagaagcttgaacggagtggacagaagagctgccaacggcacaccaa 89 Query: 472 tggcggaagatgcttgcccgctcaccccaatgcctggttcatccacaggtacaagtccag 531 | || ||||| |||||||| || ||||||||| || || || ||||||| ||| |||| Sbjct: 88 tagcagaagaagcttgcccactagtcccaatgccaggctcctcaacaggtagaagcccag 29 Query: 532 tcttgcagtagagtgcaaagtc 553 |||||||||||||||| ||||| Sbjct: 28 tcttgcagtagagtgcgaagtc 7
>ref|XM_483638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 311 caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 370 |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| || Sbjct: 759 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 700 Query: 371 accggcacagtacatcccggctgtgacggtggccat 406 ||||| |||||||||||||| ||||||| |||||| Sbjct: 699 gccggcgcagtacatcccggcggtgacggcggccat 664 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| ||| Sbjct: 536 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 477 Query: 591 ccattttgaagcaagtgcat 610 || || || |||| |||||| Sbjct: 476 ccgttctggagcaggtgcat 457
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 311 caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 370 |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| || Sbjct: 27386430 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 27386489 Query: 371 accggcacagtacatcccggctgtgacggtggccat 406 ||||| |||||||||||||| ||||||| |||||| Sbjct: 27386490 gccggcgcagtacatcccggcggtgacggcggccat 27386525 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| ||| Sbjct: 27386653 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 27386712 Query: 591 ccattttgaagcaagtgcat 610 || || || |||| |||||| Sbjct: 27386713 ccgttctggagcaggtgcat 27386732
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 311 caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 370 |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| || Sbjct: 13225 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 13284 Query: 371 accggcacagtacatcccggctgtgacggtggccat 406 ||||| |||||||||||||| ||||||| |||||| Sbjct: 13285 gccggcgcagtacatcccggcggtgacggcggccat 13320 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| ||| Sbjct: 13448 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 13507 Query: 591 ccattttgaagcaagtgcat 610 || || || |||| |||||| Sbjct: 13508 ccgttctggagcaggtgcat 13527
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 311 caggttttccacctccactttggccacatcctttcttactcctatgtcggtgatgtatct 370 |||||| ||||||||||| ||| | || ||||| || || || |||||||||||||| || Sbjct: 87957 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 88016 Query: 371 accggcacagtacatcccggctgtgacggtggccat 406 ||||| |||||||||||||| ||||||| |||||| Sbjct: 88017 gccggcgcagtacatcccggcggtgacggcggccat 88052 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||||||||| || ||||||||||| || |||||||| | ||||||| |||| ||| Sbjct: 88180 gtcttgcagtagagcgcgaagtcctcgcagttgttctcgaacacgtcgtagctgccgaac 88239 Query: 591 ccattttgaagcaagtgcat 610 || || || |||| |||||| Sbjct: 88240 ccgttctggagcaggtgcat 88259
>ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 mRNA, complete cds Length = 1025 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| Sbjct: 550 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 491 Query: 591 ccattttg 598 || ||||| Sbjct: 490 ccgttttg 483
>gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds Length = 783 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| Sbjct: 473 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 414 Query: 591 ccattttg 598 || ||||| Sbjct: 413 ccgttttg 406
>emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZH04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1021 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| Sbjct: 550 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 491 Query: 591 ccattttg 598 || ||||| Sbjct: 490 ccgttttg 483
>gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete sequence Length = 982 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| Sbjct: 517 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 458 Query: 591 ccattttg 598 || ||||| Sbjct: 457 ccgttttg 450
>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence Length = 104001 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttctcgaatatgtcgtagttgccaaac 590 |||||||| ||||| || || ||||| || || |||| ||| ||||||||||||||||| Sbjct: 37840 gtcttgcaatagagcgcgaaatcctcacagttgttcttgaaaatgtcgtagttgccaaat 37781 Query: 591 ccattttg 598 || ||||| Sbjct: 37780 ccgttttg 37773
>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02, complete sequence Length = 146541 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttct 567 ||||||||||| | ||||||||||||||||| |||| Sbjct: 113024 gtcttgcagtatatcgcaaagtcctcgcaattgttct 113060
>ref|NM_134290.1| Drosophila melanogaster Sox box protein 14 CG3090-RB, transcript variant B (Sox14), mRNA Length = 2485 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cttcaacgggagcagcttcgt 244 ||||||||||||||||||||| Sbjct: 2093 cttcaacgggagcagcttcgt 2113
>ref|NM_057546.2| Drosophila melanogaster Sox box protein 14 CG3090-RA, transcript variant A (Sox14), mRNA Length = 3159 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cttcaacgggagcagcttcgt 244 ||||||||||||||||||||| Sbjct: 2767 cttcaacgggagcagcttcgt 2787
>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone BACR28M05, complete sequence Length = 154840 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cttcaacgggagcagcttcgt 244 ||||||||||||||||||||| Sbjct: 76175 cttcaacgggagcagcttcgt 76195
>gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, complete sequence Length = 185470 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 ggtggacagaagagctgccag 460 ||||||||||||||||||||| Sbjct: 166607 ggtggacagaagagctgccag 166587
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttct 567 ||||||||||| | ||||||||||||||||| |||| Sbjct: 14032947 gtcttgcagtatatcgcaaagtcctcgcaattgttct 14032983
>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full insert sequence Length = 3464 Score = 42.1 bits (21), Expect = 2.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 531 gtcttgcagtagagtgcaaagtcctcgcaattcttct 567 ||||||||||| | ||||||||||||||||| |||| Sbjct: 2581 gtcttgcagtatatcgcaaagtcctcgcaattgttct 2617
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cttcaacgggagcagcttcgt 244 ||||||||||||||||||||| Sbjct: 505974 cttcaacgggagcagcttcgt 505994
>gb|AC004642.1|AC004642 Drosophila melanogaster DNA sequence (P1s DS00543 (D193) and DS02867 (D200)), complete sequence Length = 148432 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 cttcaacgggagcagcttcgt 244 ||||||||||||||||||||| Sbjct: 107047 cttcaacgggagcagcttcgt 107027
>gb|AC113158.3| Mus musculus BAC clone RP23-101D11 from chromosome 9, complete sequence Length = 188085 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 gcttataatatactgaagcataga 122 ||||||| |||||||||||||||| Sbjct: 10289 gcttatagtatactgaagcataga 10312
>gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromosome 22, complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tccacaggtacaagtccagt 532 |||||||||||||||||||| Sbjct: 201613 tccacaggtacaagtccagt 201594
>gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, complete sequence Length = 1456 Score = 40.1 bits (20), Expect = 9.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 528 ccagtcttgcagtagagtgcaaagtcctcgca 559 |||||||||||||| | |||||||||||||| Sbjct: 778 ccagtcttgcagtatatggcaaagtcctcgca 747
>gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosome 5, complete sequence Length = 164620 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 catccacaggtacaagtccagtct 534 |||||||||||||||| ||||||| Sbjct: 7689 catccacaggtacaaggccagtct 7666
>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence Length = 207188 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tacaagtccagtcttgcagt 540 |||||||||||||||||||| Sbjct: 20325 tacaagtccagtcttgcagt 20306
>gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, complete sequence Length = 235738 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcaccttgtctgagcttctg 263 |||||||||||||||||||| Sbjct: 154420 tcaccttgtctgagcttctg 154401
>gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome 1, complete sequence Length = 197978 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 ctggttcatccacaggtaca 524 |||||||||||||||||||| Sbjct: 38101 ctggttcatccacaggtaca 38082
>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence Length = 159785 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gcttataatatactgaagcataga 122 ||||||| |||||||||||||||| Sbjct: 14345 gcttatagtatactgaagcataga 14322
>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence Length = 212949 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 tggggtggacagaagagctg 456 |||||||||||||||||||| Sbjct: 94023 tggggtggacagaagagctg 94042
>gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosome 1, complete sequence Length = 182658 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcaccttgtctgagcttctg 263 |||||||||||||||||||| Sbjct: 4796 tcaccttgtctgagcttctg 4777
>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence Length = 164489 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 tacaagtccagtcttgcagt 540 |||||||||||||||||||| Sbjct: 32359 tacaagtccagtcttgcagt 32378
>emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in linkage group 21, complete sequence Length = 180154 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tatatatcaagcttataatatact 112 ||||||| |||||||||||||||| Sbjct: 26984 tatatattaagcttataatatact 27007
>gb|AE006024.1| Caulobacter crescentus CB15 section 350 of 359 of the complete genome Length = 11264 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 atcgccgacgaagcgcaggg 172 |||||||||||||||||||| Sbjct: 4438 atcgccgacgaagcgcaggg 4457
>emb|CR523934.1| Gallus gallus finished cDNA, clone ChEST662n6 Length = 1346 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 679 caagggaaaattgctggtgg 698 |||||||||||||||||||| Sbjct: 1021 caagggaaaattgctggtgg 1040
>gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, complete cds Length = 39574 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cctccactttggccacatcc 341 |||||||||||||||||||| Sbjct: 9699 cctccactttggccacatcc 9680
>dbj|AK053698.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130208O22 product:unclassifiable, full insert sequence Length = 2993 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcaccttgtctgagcttctg 263 |||||||||||||||||||| Sbjct: 1210 tcaccttgtctgagcttctg 1191
>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone BACR35F01, complete sequence Length = 170869 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cctccactttggccacatcc 341 |||||||||||||||||||| Sbjct: 23986 cctccactttggccacatcc 24005
>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone BACR38D12, complete sequence Length = 171831 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cctccactttggccacatcc 341 |||||||||||||||||||| Sbjct: 64305 cctccactttggccacatcc 64324
>gb|AC084684.1|CBRMM06C2 Caenorhabditis briggsae cosmid MM06C2, complete sequence Length = 27000 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 26138 tttctcttcaacaggagcagcttc 26115 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 26003 tttctcttcaacaggagcagcttc 25980 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 23723 tttctcttcaactggagcagcttc 23700 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 23243 tttctcttcaactggagcagcttc 23220 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 23018 tttctcttcaactggagcagcttc 22995 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 22838 tttctcttcaactggagcagcttc 22815 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 22628 tttctcttcaactggagcagcttc 22605 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 tttctcttcaacgggagcagcttc 242 |||||||||||| ||||||||||| Sbjct: 22210 tttctcttcaactggagcagcttc 22187
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 gtgacggtggccattcccagcgga 416 ||||| |||||||||||||||||| Sbjct: 7729571 gtgaccgtggccattcccagcgga 7729594
>emb|AL928668.7| Zebrafish DNA sequence from clone CH211-208M1, complete sequence Length = 241975 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tatatatcaagcttataatatact 112 ||||||| |||||||||||||||| Sbjct: 186811 tatatattaagcttataatatact 186788
>gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, complete sequence Length = 149454 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 catccacaggtacaagtccagtct 534 |||||||||||||||| ||||||| Sbjct: 25679 catccacaggtacaaggccagtct 25656
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete sequence Length = 261690 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cctccactttggccacatcc 341 |||||||||||||||||||| Sbjct: 142478 cctccactttggccacatcc 142497
>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence Length = 217538 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 ctggttcatccacaggtaca 524 |||||||||||||||||||| Sbjct: 159027 ctggttcatccacaggtaca 159008
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence Length = 159765 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 683 ggaaaattgctggtggcact 702 |||||||||||||||||||| Sbjct: 47572 ggaaaattgctggtggcact 47591 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,953,559 Number of Sequences: 3902068 Number of extensions: 4953559 Number of successful extensions: 84384 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84120 Number of HSP's gapped (non-prelim): 259 length of query: 724 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 701 effective length of database: 17,143,297,704 effective search space: 12017451690504 effective search space used: 12017451690504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)