ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1m03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 212 bits (107), Expect = 2e-52 Identities = 124/129 (96%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct: 77421 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagccgataa-tagtg 77363 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77362 gagctcgaaaattgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 77303 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77302 gtattggtg 77294
>ref|XM_481018.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 335 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 393 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 394 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 453 Query: 121 gtattggtg 129 ||||||||| Sbjct: 454 gtattggtg 462
>ref|XM_481019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2157 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1077 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1135 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1136 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1195 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1196 gtattggtg 1204
>ref|XM_507181.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0036E18.24 mRNA Length = 2157 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1077 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1135 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1136 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1195 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1196 gtattggtg 1204
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 77648 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 77590 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77589 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 77530 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77529 gtattggtg 77521
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 77648 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 77590 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77589 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 77530 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77529 gtattggtg 77521
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 77589 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 77531 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77530 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 77471 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77470 gtattggtg 77462
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 53659 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 53601 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 53600 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 53541 Query: 121 gtattggtg 129 ||||||||| Sbjct: 53540 gtattggtg 53532
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 126487 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 126429 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 126428 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 126369 Query: 121 gtattggtg 129 ||||||||| Sbjct: 126368 gtattggtg 126360
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 77635 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 77577 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77576 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 77517 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77516 gtattggtg 77508
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 73145 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 73203 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 73204 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 73263 Query: 121 gtattggtg 129 ||||||||| Sbjct: 73264 gtattggtg 73272
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 75836 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 75778 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 75777 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 75718 Query: 121 gtattggtg 129 ||||||||| Sbjct: 75717 gtattggtg 75709
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9900 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 9842 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9841 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 9782 Query: 121 gtattggtg 129 ||||||||| Sbjct: 9781 gtattggtg 9773
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9192072 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 9192130 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9192131 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 9192190 Query: 121 gtattggtg 129 ||||||||| Sbjct: 9192191 gtattggtg 9192199 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9115119 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 9115177 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9115178 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 9115237 Query: 121 gtattggtg 129 ||||||||| Sbjct: 9115238 gtattggtg 9115246
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 5657098 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 5657040 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 5657039 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 5656980 Query: 121 gtattggtg 129 ||||||||| Sbjct: 5656979 gtattggtg 5656971
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10369444 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 10369386 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 10369385 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 10369326 Query: 121 gtattggtg 129 ||||||||| Sbjct: 10369325 gtattggtg 10369317 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 14021423 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 14021477
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9259414 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 9259472 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9259473 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 9259532 Query: 121 gtattggtg 129 ||||||||| Sbjct: 9259533 gtattggtg 9259541
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 23181454 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 23181512 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 23181513 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 23181572 Query: 121 gtattggtg 129 ||||||||| Sbjct: 23181573 gtattggtg 23181581
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 12756200 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 12756142 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 12756141 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 12756082 Query: 121 gtattggtg 129 ||||||||| Sbjct: 12756081 gtattggtg 12756073 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 19545381 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 19545439 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 19545440 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctc 19545499 Query: 121 gtattggtg 129 ||||||||| Sbjct: 19545500 gtattggtg 19545508 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 75 atgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 3035955 atgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgtattggtg 3036009 Score = 77.8 bits (39), Expect = 7e-12 Identities = 45/47 (95%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtag 47 |||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3109410 ttgacatcaaaataatatgattcaacctcaaacccttttaaatgtag 3109364
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 33497414 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 33497356 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 33497355 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 33497296 Query: 121 gtattggtg 129 ||||||||| Sbjct: 33497295 gtattggtg 33497287
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 42611 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 42553 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 42552 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 42493 Query: 121 gtattggtg 129 ||||||||| Sbjct: 42492 gtattggtg 42484
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 70627 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 70685 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 70686 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 70745 Query: 121 gtattggtg 129 ||||||||| Sbjct: 70746 gtattggtg 70754
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 132102 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 132160 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 132161 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 132220 Query: 121 gtattggtg 129 ||||||||| Sbjct: 132221 gtattggtg 132229
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 16216 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 16274 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 16275 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 16334 Query: 121 gtattggtg 129 ||||||||| Sbjct: 16335 gtattggtg 16343
>dbj|AK105308.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B12, full insert sequence Length = 2166 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1085 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1143 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1144 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1203 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1204 gtattggtg 1212
>dbj|AK071967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084G06, full insert sequence Length = 1764 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1300 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1358 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1359 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1418 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1419 gtattggtg 1427
>dbj|AK063122.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E09, full insert sequence Length = 792 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 334 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 392 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 393 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 452 Query: 121 gtattggtg 129 ||||||||| Sbjct: 453 gtattggtg 461
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10375483 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 10375425 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 10375424 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 10375365 Query: 121 gtattggtg 129 ||||||||| Sbjct: 10375364 gtattggtg 10375356 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 14029665 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 14029719
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 5657091 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 5657033 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 5657032 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 5656973 Query: 121 gtattggtg 129 ||||||||| Sbjct: 5656972 gtattggtg 5656964
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 204 bits (103), Expect = 5e-50 Identities = 123/129 (95%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 11621 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 11563 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 11562 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 11503 Query: 121 gtattggtg 129 ||||||||| Sbjct: 11502 gtattggtg 11494
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 200 bits (101), Expect = 7e-49 Identities = 121/127 (95%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 3 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggn 62 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 524 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtgga 466 Query: 63 gctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgt 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 465 gctcgaaaattgatgtgtattcgagtcataggagccgctggtaatcagcgatatgctcgt 406 Query: 123 attggtg 129 ||||||| Sbjct: 405 attggtg 399
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 200 bits (101), Expect = 7e-49 Identities = 121/127 (95%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 3 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggn 62 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 80081 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtgga 80023 Query: 63 gctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgt 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 80022 gctcgaaaattgatgtgtattcgagtcataggagccgctggtaatcagcgatatgctcgt 79963 Query: 123 attggtg 129 ||||||| Sbjct: 79962 attggtg 79956
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 198 bits (100), Expect = 3e-48 Identities = 120/126 (95%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 4 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggng 63 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct: 32000700 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtggag 32000642 Query: 64 ctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgta 123 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 32000641 ctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgta 32000582 Query: 124 ttggtg 129 |||||| Sbjct: 32000581 ttggtg 32000576 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 24638385 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 24638327 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 24638326 gagctcgaaaattgatgtgtattcgagtcataagagctgctagtaatcagcgatatgctc 24638267 Query: 121 gtattggtg 129 ||||||||| Sbjct: 24638266 gtattggtg 24638258
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 198 bits (100), Expect = 3e-48 Identities = 120/126 (95%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 4 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggng 63 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct: 92652 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtggag 92594 Query: 64 ctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgta 123 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 92593 ctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgta 92534 Query: 124 ttggtg 129 |||||| Sbjct: 92533 ttggtg 92528
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 198 bits (100), Expect = 3e-48 Identities = 120/126 (95%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 4 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggng 63 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct: 1825 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtggag 1767 Query: 64 ctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgta 123 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1766 ctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgta 1707 Query: 124 ttggtg 129 |||||| Sbjct: 1706 ttggtg 1701
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 198 bits (100), Expect = 3e-48 Identities = 120/126 (95%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 4 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggng 63 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | Sbjct: 32091212 aaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtggag 32091154 Query: 64 ctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgta 123 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 32091153 ctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgta 32091094 Query: 124 ttggtg 129 |||||| Sbjct: 32091093 ttggtg 32091088 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 24555854 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 24555796 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 24555795 gagctcgaaaattgatgtgtattcgagtcataagagctgctagtaatcagcgatatgctc 24555736 Query: 121 gtattggtg 129 ||||||||| Sbjct: 24555735 gtattggtg 24555727
>ref|XM_479424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1075 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1133 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1134 gagctcaaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1193 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1194 gtattggtg 1202
>ref|XM_479423.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 1075 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 1133 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1134 gagctcaaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 1193 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1194 gtattggtg 1202
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 14571 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 14513 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 14512 gagctcgaaaattgatgtgtattcgagtcataagagctgctagtaatcagcgatatgctc 14453 Query: 121 gtattggtg 129 ||||||||| Sbjct: 14452 gtattggtg 14444
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 146093 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 146151 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 146152 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctc 146211 Query: 121 gtattggtg 129 ||||||||| Sbjct: 146212 gtattggtg 146220
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 5280 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 5338 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 5339 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctc 5398 Query: 121 gtattggtg 129 ||||||||| Sbjct: 5399 gtattggtg 5407
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 70431 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 70373 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 70372 gagctcgaaaattgatgtgtattcgagtcataagagctgctagtaatcagcgatatgctc 70313 Query: 121 gtattggtg 129 ||||||||| Sbjct: 70312 gtattggtg 70304
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 27923131 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 27923073 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 27923072 gagctcaaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 27923013 Query: 121 gtattggtg 129 ||||||||| Sbjct: 27923012 gtattggtg 27923004
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 86489 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 86431 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 86430 gagctcaaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 86371 Query: 121 gtattggtg 129 ||||||||| Sbjct: 86370 gtattggtg 86362
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 12465 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtg 12407 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 12406 gagctcaaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 12347 Query: 121 gtattggtg 129 ||||||||| Sbjct: 12346 gtattggtg 12338
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 196 bits (99), Expect = 1e-47 Identities = 122/129 (94%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct: 77591 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-agcg 77533 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 77532 gagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcgatatgctc 77473 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77472 gtattggtg 77464
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 192 bits (97), Expect = 2e-46 Identities = 120/127 (94%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 3 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggn 62 |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 79423 gaaatccaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtgga 79365 Query: 63 gctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgt 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 79364 gctcgaaaattgatgtgtattcgagtcataggagccgctggtaatcagcgatatgctcgt 79305 Query: 123 attggtg 129 ||||||| Sbjct: 79304 attggtg 79298
>emb|X06734.1|CHZMRP14 Maize chloroplast genes for ribosomal proteins L14, S8 and L16 partial Length = 1287 Score = 192 bits (97), Expect = 2e-46 Identities = 120/127 (94%), Gaps = 1/127 (0%) Strand = Plus / Plus Query: 3 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggn 62 |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 246 gaaatccaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtgga 304 Query: 63 gctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgt 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 305 gctcgaaaattgatgtgtattcgagtcataggagccgctggtaatcagcgatatgctcgt 364 Query: 123 attggtg 129 ||||||| Sbjct: 365 attggtg 371
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 192 bits (97), Expect = 2e-46 Identities = 120/127 (94%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 3 gaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggn 62 |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 79439 gaaatccaaataatatgattcaacctcagacccttttaaatgtagcagataac-agtgga 79381 Query: 63 gctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgt 122 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 79380 gctcgaaaattgatgtgtattcgagtcataggagccgctggtaatcagcgatatgctcgt 79321 Query: 123 attggtg 129 ||||||| Sbjct: 79320 attggtg 79314
>ref|XM_450630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 793 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 335 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 393 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 394 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 453 Query: 121 gtattggtg 129 ||||||||| Sbjct: 454 gtattggtg 462
>ref|XM_450631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 1063 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 1121 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 1122 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 1181 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1182 gtattggtg 1190
>ref|XM_506652.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1001_G09.24 mRNA Length = 1742 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 1278 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 1336 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 1337 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 1396 Query: 121 gtattggtg 129 ||||||||| Sbjct: 1397 gtattggtg 1405
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 11896235 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 11896293 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 11896294 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 11896353 Query: 121 gtattggtg 129 ||||||||| Sbjct: 11896354 gtattggtg 11896362 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattca 24 |||||||||||||||||||||||| Sbjct: 14456045 ttgaaatcaaaataatatgattca 14456068
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 |||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| Sbjct: 24916690 ttgaaatcaaaataatataatttaacctcagacccttttaaatgtagcagataa-tagtg 24916748 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || |||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 24916749 gagctcgaaaattaatgtgtattcaagtcataggagctgctagtaatcagcgatatgctc 24916808 Query: 121 gtattggtg 129 ||||||||| Sbjct: 24916809 gtattggtg 24916817
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 77725 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 77783 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 77784 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 77843 Query: 121 gtattggtg 129 ||||||||| Sbjct: 77844 gtattggtg 77852
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct: 715 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataac-actg 773 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct: 774 gagctcgaaaattaatgtgtattcgagtcataggagctgctagtagtcagcgatatgctc 833 Query: 121 gtattggtg 129 ||||||||| Sbjct: 834 gtattggtg 842
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 180 bits (91), Expect = 7e-43 Identities = 120/129 (93%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtg 60 |||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||| Sbjct: 77973 ttgaaatcaaaataatataatttaacctcagacccttttaaatgtagcagataa-tagtg 78031 Query: 61 gngctcgaaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 | |||||||| || |||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 78032 gagctcgaaaattaatgtgtattcaagtcataggagctgctagtaatcagcgatatgctc 78091 Query: 121 gtattggtg 129 ||||||||| Sbjct: 78092 gtattggtg 78100
>ref|NM_190859.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 372 Score = 172 bits (87), Expect = 2e-40 Identities = 107/113 (94%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| Sbjct: 1 atgattcaacctcagacccttttaaatgtagcagataac-agtggagctcgaaaattgat 59 Query: 77 gtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 60 gtgtattcgagtcataggagctgctagtaatcagcgatatgctcgtattggtg 112
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 75 atgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 23199 atgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgtattggtg 23253 Score = 77.8 bits (39), Expect = 7e-12 Identities = 45/47 (95%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacctcagacccttttaaatgtag 47 |||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 96654 ttgacatcaaaataatatgattcaacctcaaacccttttaaatgtag 96608
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 75 atgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 129971 atgtgtattcgagtcataggagctgctagtaatcagcgatatgctcgtattggtg 130025
>gb|DQ069425.1| Typha latifolia ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 97.6 bits (49), Expect = 8e-18 Identities = 98/113 (86%), Gaps = 4/113 (3%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||||||| |||||||| || || || || |||||||| || || Sbjct: 1 atgattcaacctcagacccttttgaatgtagcgga-taacagcggagctcgaaaattaat 59 Query: 77 gtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 |||||||||| |||||||| ||||||||||| |||||||||| |||||||| Sbjct: 60 gtgtattcgaatcatagga---gctggtaatcaccgatatgctcatattggtg 109
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 93.7 bits (47), Expect = 1e-16 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 14 aatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaantt 73 |||||||||||||||||||||| ||| |||||||||||| || || || |||||| | || Sbjct: 3326 aatatgattcaacctcagacccatttgaatgtagcagac-aacagcggggctcgagaatt 3384 Query: 74 gatgtgtattcgagtcataggagct 98 ||||||||||||| ||||||||||| Sbjct: 3385 gatgtgtattcgaatcataggagct 3409
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 93.7 bits (47), Expect = 1e-16 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 14 aatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaantt 73 |||||||||||||||||||||| ||| |||||||||||| || || || |||||| | || Sbjct: 79607 aatatgattcaacctcagacccatttgaatgtagcagac-aacagcggggctcgagaatt 79549 Query: 74 gatgtgtattcgagtcataggagct 98 ||||||||||||| ||||||||||| Sbjct: 79548 gatgtgtattcgaatcataggagct 79524
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 93.7 bits (47), Expect = 1e-16 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||||||||||||||||||||| || || || || |||||| Sbjct: 80814 aaaatgatatgattcaacctcagacccttttaaatgtagcgga-taacagcggggctcga 80756 Query: 69 aanttgatgtgtattcgagtcataggagc 97 | ||||||||||||||| |||||||||| Sbjct: 80755 gaattgatgtgtattcgaatcataggagc 80727
>gb|DQ069426.1| Yucca schidigera ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 89.7 bits (45), Expect = 2e-15 Identities = 97/113 (85%), Gaps = 4/113 (3%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 |||||||||||||| |||||||| ||||||||||| || || || |||||| | ||||| Sbjct: 1 atgattcaacctcaaacccttttgaatgtagcaga-taacagcggagctcgagaattgat 59 Query: 77 gtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 |||||||||| ||||||| ||||||||||| |||||||||| |||||||| Sbjct: 60 gtgtattcgaatcatagg---ggctggtaatcaccgatatgctcatattggtg 109
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 87.7 bits (44), Expect = 7e-15 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||| ||| ||||||||||| || || || |||||| Sbjct: 81013 aaaatgatatgattcaacctcagacccatttgaatgtagcaga-taacagcggggctcga 80955 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 80954 gaattgatgtgtattcgaatcataggagct 80925
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 87.7 bits (44), Expect = 7e-15 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||| ||| ||||||||||| || || || |||||| Sbjct: 80459 aaaatgatatgattcaacctcagacccatttgaatgtagcaga-taacagcggggctcga 80401 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 80400 gaattgatgtgtattcgaatcataggagct 80371
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 87.7 bits (44), Expect = 7e-15 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || ||||| || |||||| | ||||| Sbjct: 82674 atgattcaacctcagacccatttaaatgtagcgga-taatagcggggctcgagaattgat 82616 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 82615 gtgtattcgaatcataggagct 82594
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 87.7 bits (44), Expect = 7e-15 Identities = 96/112 (85%), Gaps = 4/112 (3%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||||||| |||||||| || || ||||| |||| | Sbjct: 82958 aaaatgatatgattcaacctcagacccttttgaatgtagcgga-taacagtggagctcaa 82900 Query: 69 aanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctc 120 || || |||||||||||| |||||||| |||||||||| |||||||||| Sbjct: 82899 aaattaatgtgtattcgaatcatagga---actggtaatcaccgatatgctc 82851
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 87.7 bits (44), Expect = 7e-15 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||||||| |||||||| || || || || |||||| Sbjct: 83044 aaaatgatatgattcaacctcagacccttttgaatgtagcgga-taacagcggggctcga 82986 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 82985 gaattgatgtgtattcgaatcataggagct 82956
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 87.7 bits (44), Expect = 7e-15 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || ||||| || |||||| | ||||| Sbjct: 82821 atgattcaacctcagacccatttaaatgtagcgga-taatagcggggctcgagaattgat 82763 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 82762 gtgtattcgaatcataggagct 82741
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 87.7 bits (44), Expect = 7e-15 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || ||||| || |||||| | ||||| Sbjct: 82818 atgattcaacctcagacccatttaaatgtagcgga-taatagcggggctcgagaattgat 82760 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 82759 gtgtattcgaatcataggagct 82738
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 87.7 bits (44), Expect = 7e-15 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || ||||| || |||||| | ||||| Sbjct: 82725 atgattcaacctcagacccatttaaatgtagcgga-taatagcggggctcgagaattgat 82667 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 82666 gtgtattcgaatcataggagct 82645
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 87.7 bits (44), Expect = 7e-15 Identities = 79/90 (87%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||| ||| ||||||||||| || || || |||||| Sbjct: 81011 aaaatgatatgattcaacctcagacccatttgaatgtagcaga-taacagcggggctcga 80953 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 80952 gaattgatgtgtattcgaatcataggagct 80923
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 87.7 bits (44), Expect = 7e-15 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || ||||| || |||||| | ||||| Sbjct: 82686 atgattcaacctcagacccatttaaatgtagcgga-taatagcggggctcgagaattgat 82628 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 82627 gtgtattcgaatcataggagct 82606
>gb|DQ069421.1| Acorus americanus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 85.7 bits (43), Expect = 3e-14 Identities = 72/81 (88%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 |||||||||||||||||||||||||||||||| || || || || |||||| | ||||| Sbjct: 1 atgattcaacctcagacccttttaaatgtagcgga-taacagcggggctcgagaattgat 59 Query: 77 gtgtattcgagtcataggagc 97 |||||||||| |||||||||| Sbjct: 60 gtgtattcgaatcataggagc 80
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 83.8 bits (42), Expect = 1e-13 Identities = 103/122 (84%), Gaps = 4/122 (3%) Strand = Plus / Minus Query: 8 caaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcg 67 ||||||||||||||||||||||| |||||||| ||||||||||| || || || || || Sbjct: 83338 caaaataatatgattcaacctcaaacccttttgaatgtagcaga-taacagcggagcccg 83280 Query: 68 aaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattgg 127 | | ||||||||||||||| ||||||| ||| |||||| |||||||||| |||||| Sbjct: 83279 agaattgatgtgtattcgaatcatagg---ggctagtaatcgacgatatgctcatattgg 83223 Query: 128 tg 129 || Sbjct: 83222 tg 83221
>gb|AF441853.1|AF441853 Cucumis sativus RBL1 mRNA, complete cds; chloroplast gene for chloroplast product Length = 703 Score = 83.8 bits (42), Expect = 1e-13 Identities = 103/122 (84%), Gaps = 4/122 (3%) Strand = Plus / Plus Query: 8 caaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcg 67 ||||||||||||||||||||||| |||||||| ||||||||||| || || || || || Sbjct: 58 caaaataatatgattcaacctcaaacccttttgaatgtagcaga-taacagcggagcccg 116 Query: 68 aaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattgg 127 | | ||||||||||||||| ||||||| ||| |||||| |||||||||| |||||| Sbjct: 117 agaattgatgtgtattcgaatcatagg---ggctagtaatcgacgatatgctcatattgg 173 Query: 128 tg 129 || Sbjct: 174 tg 175
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 83.8 bits (42), Expect = 1e-13 Identities = 103/122 (84%), Gaps = 4/122 (3%) Strand = Plus / Minus Query: 8 caaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcg 67 ||||||||||||||||||||||| |||||||| ||||||||||| || || || || || Sbjct: 83566 caaaataatatgattcaacctcaaacccttttgaatgtagcaga-taacagcggagcccg 83508 Query: 68 aaanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattgg 127 | | ||||||||||||||| ||||||| ||| |||||| |||||||||| |||||| Sbjct: 83507 agaattgatgtgtattcgaatcatagg---ggctagtaatcgacgatatgctcatattgg 83451 Query: 128 tg 129 || Sbjct: 83450 tg 83449
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 81.8 bits (41), Expect = 4e-13 Identities = 96/113 (84%), Gaps = 4/113 (3%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| ||| ||||||||||| || || || || ||| | ||||| Sbjct: 85455 atgattcaacctcagacccatttgaatgtagcaga-taacagcggggcccgagaattgat 85397 Query: 77 gtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||||||||||||||||| ||| |||||| |||||||||| |||||||| Sbjct: 85396 gtgtattcgagtcatagga---gctagtaatcgccgatatgctcatattggtg 85347
>gb|DQ069423.1| Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 79.8 bits (40), Expect = 2e-12 Identities = 72/82 (87%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| ||| |||||||| ||| || || || |||||||| |||| Sbjct: 1 atgattcaacctcagacccatttgaatgtagcggac-aacagcggagctcgaaaactgat 59 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 60 gtgtattcgaatcataggagct 81
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 79.8 bits (40), Expect = 2e-12 Identities = 72/82 (87%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || || || || |||||| | ||||| Sbjct: 83546 atgattcaacctcagacccatttaaatgtagcgga-taacagcggggctcgagaattgat 83488 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 83487 gtgtattcgaatcataggagct 83466
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 79.8 bits (40), Expect = 2e-12 Identities = 72/82 (87%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || || || || |||||| | ||||| Sbjct: 83544 atgattcaacctcagacccatttaaatgtagcgga-taacagcggggctcgagaattgat 83486 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 83485 gtgtattcgaatcataggagct 83464
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 79.8 bits (40), Expect = 2e-12 Identities = 78/90 (86%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| |||| |||||||||||| || ||||| || || || Sbjct: 78951 aaaatgatatgattcaacctcaaacccatttaaatgtagccga-taatagcggagcccgc 78893 Query: 69 aanttgatgtgtattcgagtcataggagct 98 || ||||||||||||||| ||||||||||| Sbjct: 78892 aaattgatgtgtattcgaatcataggagct 78863
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 79.8 bits (40), Expect = 2e-12 Identities = 72/82 (87%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || || || || |||||| | ||||| Sbjct: 83309 atgattcaacctcagacccatttaaatgtagcgga-taacagcggggctcgagaattgat 83251 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 83250 gtgtattcgaatcataggagct 83229
>gb|M15176.1|MZECPPG Zea mays chloroplast Eco x DNA Length = 1368 Score = 77.8 bits (39), Expect = 7e-12 Identities = 39/39 (100%) Strand = Plus / Plus Query: 10 aaataatatgattcaacctcagacccttttaaatgtagc 48 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1161 aaataatatgattcaacctcagacccttttaaatgtagc 1199 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gcgatatgctcgtattggtg 129 |||||||||||||||||||| Sbjct: 1260 gcgatatgctcgtattggtg 1279 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gcgatatgctcgtattggtg 129 |||||||||||||||||||| Sbjct: 1200 gcgatatgctcgtattggtg 1219
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 71.9 bits (36), Expect = 4e-10 Identities = 71/82 (86%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||||||| |||||||| ||| || || || || ||||| | || Sbjct: 86979 atgattcaacctcagacccttttgaatgtagcggac-aacagcggagcccgaaaacttat 86921 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 86920 gtgtattcgaatcataggagct 86899
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 71.9 bits (36), Expect = 4e-10 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||||||||||| ||| |||||||| ||| || || || |||||| Sbjct: 82295 aaaatgatatgattcaacctcagacccatttgaatgtagcggac-aacagcggggctcga 82237 Query: 69 aanttgatgtgtattcgagtcatagg 94 | |||||||| |||||| ||||||| Sbjct: 82236 gaattgatgtgcattcgaatcatagg 82211
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 71.9 bits (36), Expect = 4e-10 Identities = 71/82 (86%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||||||| |||||||||||| || || || || |||||| | || || Sbjct: 83789 atgattcaacctcagacccatttaaatgtagcgga-taacagcggggctcgagaattaat 83731 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| ||||||||||| Sbjct: 83730 gtgtattcgaatcataggagct 83709
>dbj|AB077439.1| Sophora alopecuroides plastid DNA, intron region Length = 569 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatg 44 |||||||||||||||||||||||||||||||||||| Sbjct: 526 aaaataatatgattcaacctcagacccttttaaatg 561
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 65.9 bits (33), Expect = 3e-08 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||| ||||||| ||| |||||||| ||| || || || || ||| Sbjct: 85918 aaaatgatatgattcaaccccagacccatttgaatgtagcggac-aacagcggggcccga 85860 Query: 69 aanttgatgtgtattcgagtcatagga 95 | ||||||||||||||| |||||||| Sbjct: 85859 gaattgatgtgtattcgaatcatagga 85833
>dbj|AB077366.1| Iris bungei plastid DNA, intron region Length = 576 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 4 aaatcaaaataatatgattcaacctcagacccttttaaatg 44 |||| ||||| |||||||||||||||||||||||||||||| Sbjct: 528 aaataaaaatgatatgattcaacctcagacccttttaaatg 568
>gb|DQ069424.1| Ranunculus macranthus ribosomal protein L14 (rpl14) gene, partial cds; chloroplast Length = 366 Score = 63.9 bits (32), Expect = 1e-07 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 |||||||||||||||||| |||||||||||| ||| || || || ||| |||| || || Sbjct: 1 atgattcaacctcagacctatttaaatgtagcggac-aacagcggggctagaaaattaat 59 Query: 77 gtgtattcgagtcataggagct 98 ||||||| || ||||||||||| Sbjct: 60 gtgtattagaatcataggagct 81
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence Length = 130054 Score = 63.9 bits (32), Expect = 1e-07 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| ||| |||||||||||| || ||||| || || || Sbjct: 30849 aaaatgatatgattcaacctcaaacctatttaaatgtagccga-taatagcggagcccgc 30791 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 30790 gaattgatgtgtattcgaatcataggagct 30761
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence Length = 140624 Score = 63.9 bits (32), Expect = 1e-07 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| ||| |||||||||||| || ||||| || || || Sbjct: 114654 aaaatgatatgattcaacctcaaacctatttaaatgtagccga-taatagcggagcccgc 114712 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 114713 gaattgatgtgtattcgaatcataggagct 114742
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 63.9 bits (32), Expect = 1e-07 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| ||| |||||||||||| || ||||| || || || Sbjct: 44666 aaaatgatatgattcaacctcaaacctatttaaatgtagccga-taatagcggagcccgc 44724 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | ||||||||||||||| ||||||||||| Sbjct: 44725 gaattgatgtgtattcgaatcataggagct 44754
>dbj|AB077337.1| Saussurea involucrata plastid DNA, intron region Length = 541 Score = 63.9 bits (32), Expect = 1e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatg 44 ||||| |||||||||||||||||||||||||||||| Sbjct: 498 aaaatcatatgattcaacctcagacccttttaaatg 533
>emb|X03834.1|CHSOL16 Spirodela oligorhiza chloroplast gene for ribosomal protein L16 Length = 2064 Score = 63.9 bits (32), Expect = 1e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagc 48 ||||| ||||||||||||||||||||||||| |||||||| Sbjct: 2010 aaaatgatatgattcaacctcagacccttttgaatgtagc 2049
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 61.9 bits (31), Expect = 4e-07 Identities = 72/85 (84%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 14 aatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaantt 73 |||||||||||||| || ||| ||| |||||||||||| || || || ||| |||| || Sbjct: 80158 aatatgattcaaccacaaacctatttgaatgtagcagac-aacagcggggctagaaaatt 80100 Query: 74 gatgtgtattcgagtcataggagct 98 ||||||||||||| | ||||||||| Sbjct: 80099 gatgtgtattcgaataataggagct 80075
>dbj|AB077335.1| Allium altaicum plastid DNA, intron region Length = 551 Score = 58.0 bits (29), Expect = 7e-06 Identities = 29/29 (100%) Strand = Plus / Plus Query: 16 tatgattcaacctcagacccttttaaatg 44 ||||||||||||||||||||||||||||| Sbjct: 515 tatgattcaacctcagacccttttaaatg 543
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 58.0 bits (29), Expect = 7e-06 Identities = 99/121 (81%), Gaps = 4/121 (3%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| ||||||||||||| || ||| ||| |||||||||||| || || || ||| || Sbjct: 81072 aaaatgatatgattcaaccacaaacctatttgaatgtagcagac-aacagcggggctaga 81014 Query: 69 aanttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggt 128 | ||||||||||||||| | |||||| ||| |||||| |||||||||| ||||||| Sbjct: 81013 gaattgatgtgtattcgaataatagga---gctagtaatcgccgatatgctcatattggt 80957 Query: 129 g 129 | Sbjct: 80956 g 80956
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 56.0 bits (28), Expect = 3e-05 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| |||| ||| ||||| || || || ||||| |||||| Sbjct: 86178 aaaatgatatgattcaacctcaaacccgtttgaatgtcgcgga-taacagtggggctcga 86120 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | || |||||||||||| |||| |||||| Sbjct: 86119 gaattaatgtgtattcgaatcatcggagct 86090
>dbj|AB077365.1| Iris dichotoma plastid DNA, intron region Length = 566 Score = 56.0 bits (28), Expect = 3e-05 Identities = 28/28 (100%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatg 44 |||||||||||||||||||||||||||| Sbjct: 531 atgattcaacctcagacccttttaaatg 558
>dbj|AB087469.1| Anthoceros formosae chloroplast rpl14 mRNA for ribosomal protein L14, complete cds Length = 460 Score = 56.0 bits (28), Expect = 3e-05 Identities = 45/50 (90%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcga 86 |||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 370 tttaaatgtagcagacaac-agtggagctcgaaaactgatgtgtattcga 322
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 56.0 bits (28), Expect = 3e-05 Identities = 45/50 (90%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcga 86 |||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 100069 tttaaatgtagcagacaac-agtggagctcgaaaactgatgtgtattcga 100021
>gb|M60179.1|OBECPRPA O.ammophila ribosomal protein L14 and L16 (rpl14, rpl16) genes, 3' end and 5' end Length = 542 Score = 56.0 bits (28), Expect = 3e-05 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcga 68 ||||| |||||||||||||||| |||| ||| ||||| || || || ||||| |||||| Sbjct: 132 aaaatgatatgattcaacctcaaacccgtttgaatgtcgcgga-taacagtggggctcga 74 Query: 69 aanttgatgtgtattcgagtcataggagct 98 | || |||||||||||| |||| |||||| Sbjct: 73 gaattaatgtgtattcgaatcatcggagct 44
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 50.1 bits (25), Expect = 0.002 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 |||||||||||||| || ||||||||| ||||| |||||||| |||||||| | || Sbjct: 76621 atgattcaacctcaaacttatttaaatgttgcaga-taatagtggagctcgaaaactaat 76563 Query: 77 gtgtattcgagtcatagga 95 ||| |||||||| |||||| Sbjct: 76562 gtgcattcgagttatagga 76544
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 48.1 bits (24), Expect = 0.006 Identities = 68/82 (82%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||| |||| ||| ||| |||||||| ||||| || || |||||| | ||||| Sbjct: 87686 atgattcaagctcaaacctatttgaatgtagcggacaac-agcggggctcgagaattgat 87628 Query: 77 gtgtattcgagtcataggagct 98 |||||||||| || |||||||| Sbjct: 87627 gtgtattcgaatcgtaggagct 87606
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattca 24 |||||||||||||||||||||||| Sbjct: 147848 ttgaaatcaaaataatatgattca 147871
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1 ttgaaatcaaaataatatgattca 24 |||||||||||||||||||||||| Sbjct: 55610 ttgaaatcaaaataatatgattca 55633
>dbj|AB077333.1| Ferula feruloides plastid DNA, intron region Length = 531 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 21 ttcaacctcagacccttttaaatg 44 |||||||||||||||||||||||| Sbjct: 500 ttcaacctcagacccttttaaatg 523
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 48.1 bits (24), Expect = 0.006 Identities = 59/70 (84%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 |||||||||||||| | |||||| ||| ||||| || ||||| |||||||| ||||| Sbjct: 79781 atgattcaacctcaaagttatttaaaagtaacagac-aacagtggagctcgaaaattgat 79723 Query: 77 gtgtattcga 86 |||||||||| Sbjct: 79722 gtgtattcga 79713
>gb|AC157473.1| Medicago truncatula chromosome 7 BAC clone mte1-11e4, complete sequence Length = 125310 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 21 ttcaacctcagacccttttaaat 43 ||||||||||||||||||||||| Sbjct: 65402 ttcaacctcagacccttttaaat 65424
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 44.1 bits (22), Expect = 0.098 Identities = 45/52 (86%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcgagt 88 |||||||||||| || || |||||| ||||| || || |||||||||||||| Sbjct: 140505 tttaaatgtagctgataa-tagtggtgctcgcaaattaatgtgtattcgagt 140455
>dbj|AB077440.1| Incarvillea potaninii plastid DNA, intron region Length = 536 Score = 44.1 bits (22), Expect = 0.098 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 15 atatgattcaacctcagacccttttaaatg 44 ||||||||||||||||| |||||||||||| Sbjct: 500 atatgattcaacctcag-cccttttaaatg 528
>dbj|AB077334.1| Zygophyllum pterocarpum plastid DNA, intron region Length = 553 Score = 44.1 bits (22), Expect = 0.098 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 15 atatgattcaacctcagacccttttaaatg 44 ||||||||||||||||| |||||||||||| Sbjct: 517 atatgattcaacctcag-cccttttaaatg 545
>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence Length = 129121 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 cttttaaatgtagcagacaaatagt 59 ||||||||||||||| ||||||||| Sbjct: 9858 cttttaaatgtagcaaacaaatagt 9834
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 42.1 bits (21), Expect = 0.39 Identities = 36/41 (87%) Strand = Plus / Plus Query: 14 aatatgattcaacctcagacccttttaaatgtagcagacaa 54 ||||||||||||||||| || ||| |||||||||||||| Sbjct: 5214 aatatgattcaacctcaaacgtatttgaatgtagcagacaa 5254
>gb|M30487.1|CPACYRP Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds Length = 6468 Score = 42.1 bits (21), Expect = 0.39 Identities = 31/35 (88%) Strand = Plus / Plus Query: 54 aatagtggngctcgaaanttgatgtgtattcgagt 88 |||||||| ||||| || || |||||||||||||| Sbjct: 1710 aatagtggagctcgtaaattaatgtgtattcgagt 1744
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 42.1 bits (21), Expect = 0.39 Identities = 31/35 (88%) Strand = Plus / Minus Query: 54 aatagtggngctcgaaanttgatgtgtattcgagt 88 |||||||| ||||| || || |||||||||||||| Sbjct: 52512 aatagtggagctcgtaaattaatgtgtattcgagt 52478
>emb|CT025560.9| Mouse DNA sequence from clone RP23-432N22 on chromosome 16, complete sequence Length = 212903 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 acccttttaaatgtagcaga 51 |||||||||||||||||||| Sbjct: 68148 acccttttaaatgtagcaga 68129
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 330858 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 330912
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 330048 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 330102
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 330045 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 330099
>emb|X68048.1|CHPVHISG Phaseolus vulgaris chloroplast DNA for tRNA-His gene region Length = 1698 Score = 40.1 bits (20), Expect = 1.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatg 44 ||||| |||||||||||||||| || | |||||||| Sbjct: 1331 aaaatgatatgattcaacctcaaactcatttaaatg 1296
>emb|BX510930.15| Zebrafish DNA sequence from clone DKEY-91L18 in linkage group 14, complete sequence Length = 95848 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gaaatcaaaataatatgatt 22 |||||||||||||||||||| Sbjct: 64491 gaaatcaaaataatatgatt 64510
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 agcgatatgctcgtattggt 128 |||||||||||||||||||| Sbjct: 204859 agcgatatgctcgtattggt 204840
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 40.1 bits (20), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagc 48 ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 5528 aaaatgatatgattcaacctcaaactcatttgaatgtagc 5567
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 37552 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 37606
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 40.1 bits (20), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagc 48 ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 80085 aaaatgatatgattcaacctcaaactcatttgaatgtagc 80046
>gb|AC154414.2| Mus musculus BAC clone RP24-231D24 from 16, complete sequence Length = 157232 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 acccttttaaatgtagcaga 51 |||||||||||||||||||| Sbjct: 141824 acccttttaaatgtagcaga 141843
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 98813 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 98867
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 40.1 bits (20), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagc 48 ||||| |||||||||||||||| | || ||| |||||||| Sbjct: 85863 aaaatgatatgattcaacctcaaagccatttgaatgtagc 85824
>gb|M80799.1|VIRCPRPL Vigna unguiculata chloroplast ribosomal protein (L16 and L14) genes, 3' and 5' end respectively Length = 1268 Score = 40.1 bits (20), Expect = 1.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 9 aaaataatatgattcaacctcagacccttttaaatgtagc 48 ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 1119 aaaatgatatgattcaacctcaaactcatttgaatgtagc 1158
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 40.1 bits (20), Expect = 1.5 Identities = 49/58 (84%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 72 ttgatgtgtattcgagtcataggagctgctggtaatcagcgatatgctcgtattggtg 129 ||||| ||||||||| || ||||||||| ||||||| ||||||||| |||||||| Sbjct: 329902 ttgatatgtattcgaatcttaggagctg---gtaatcactgatatgctcatattggtg 329956
>gb|AY345979.1| Stevia rebaudiana UDP-glycosyltransferase 73E1 mRNA, complete cds Length = 1862 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattcaacc 27 |||||||||||| ||| |||||||||| Sbjct: 1692 ttgaaatcaaaaaaatctgattcaacc 1666
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 38.2 bits (19), Expect = 6.0 Identities = 57/69 (82%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 17 atgattcaacctcagacccttttaaatgtagcagacaaatagtggngctcgaaanttgat 76 ||||||||||||||| | |||||||||||| ||| || || || |||||||| | || Sbjct: 41120 atgattcaacctcagtcttatttaaatgtagccgac-aacagcggagctcgaaagctcat 41178 Query: 77 gtgtattcg 85 ||||||||| Sbjct: 41179 gtgtattcg 41187
>gb|AF164129.1| Urostyla grandis macronuclear small-subunit ribosomal RNA gene, complete sequence Length = 1768 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1488 gctgctggtaatcagcaatatgc 1510
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 38.2 bits (19), Expect = 6.0 Identities = 42/49 (85%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcg 85 |||| |||||||||| || ||| || ||||| || |||||||||||||| Sbjct: 76715 tttagatgtagcagataa-tagcggagctcgcaagttgatgtgtattcg 76668
>gb|AC151754.1| Ornithorhynchus anatinus chromosome UNK clone OABb-469A1, complete sequence Length = 138437 Score = 38.2 bits (19), Expect = 6.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 44 gtagcagacaaatagtggngct 65 |||||||||||||||||| ||| Sbjct: 104807 gtagcagacaaatagtggagct 104786
>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007C02, complete sequence Length = 148265 Score = 38.2 bits (19), Expect = 6.0 Identities = 28/31 (90%) Strand = Plus / Minus Query: 99 gctggtaatcagcgatatgctcgtattggtg 129 ||||||||||| ||||||||| |||||||| Sbjct: 98780 gctggtaatcactgatatgctcatattggtg 98750
>gb|U28730.1| Caenorhabditis elegans cosmid K10B2, complete sequence Length = 17344 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 ttgaaatcaaaataatatgattc 23 |||||||||||||||||| |||| Sbjct: 15584 ttgaaatcaaaataatatcattc 15562
>gb|DQ503578.1| Holosticha manca small subunit ribosomal RNA gene, complete sequence Length = 1772 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1489 gctgctggtaatcagcaatatgc 1511
>gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, complete sequence Length = 178222 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 gacccttttaaatgtagca 49 ||||||||||||||||||| Sbjct: 60755 gacccttttaaatgtagca 60773
>gb|DQ487193.1| Codonella sp. HCB-2005 18S small subunit ribosomal RNA gene, partial sequence Length = 1680 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1402 gctgctggtaatcagcaatatgc 1424
>gb|AY821918.1| Uncultured tintinnid ciliate clone CH1_5A_5 small subunit ribosomal RNA gene, partial sequence Length = 1588 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1380 gctgctggtaatcagcaatatgc 1402
>gb|AY083001.1| Uncultured eukaryote clone RT7iin1 18S ribosomal RNA gene, complete sequence Length = 1768 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1491 gctgctggtaatcagcaatatgc 1513
>gb|AC123792.4| Mus musculus BAC clone RP24-309B14 from chromosome 7, complete sequence Length = 162493 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 agtcataggagctgctggt 104 ||||||||||||||||||| Sbjct: 54755 agtcataggagctgctggt 54773
>gb|AF508781.1| Urostyla grandis 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 3615 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1488 gctgctggtaatcagcaatatgc 1510
>gb|AF508769.1| Oxytricha sp. Steamboat Hot Springs 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 3626 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1493 gctgctggtaatcagcaatatgc 1515
>emb|CR376821.11| Zebrafish DNA sequence from clone CH211-67P11 in linkage group 25, complete sequence Length = 187216 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 ttaaatgtagcagacaaat 56 ||||||||||||||||||| Sbjct: 146921 ttaaatgtagcagacaaat 146903
>emb|Z98172.1|HS234H5 Human DNA sequence from clone RP1-234H5 on chromosome 6q21 Contains the 3' end of the gene for \, complete sequence Length = 102230 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 gaaatcaaaataatatgat 21 ||||||||||||||||||| Sbjct: 58233 gaaatcaaaataatatgat 58215
>emb|BX546490.2| Human DNA sequence from clone RP11-336F23 on chromosome 1, complete sequence Length = 110467 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 ctcagacccttttaaatgt 45 ||||||||||||||||||| Sbjct: 91564 ctcagacccttttaaatgt 91582
>emb|AL354695.12| Human DNA sequence from clone RP11-265G8 on chromosome 10 Contains a high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene, a pseudogene similar to part of ATPase, Ca++ transporting cardiac muscle slow twitch 2 (ATP2A2) and the gene for a novel protein, complete sequence Length = 125859 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 aaatcaaaataatatgatt 22 ||||||||||||||||||| Sbjct: 2925 aaatcaaaataatatgatt 2943
>emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 10/17 Length = 345829 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 tcaaaataatatgattcaa 25 ||||||||||||||||||| Sbjct: 342408 tcaaaataatatgattcaa 342390
>gb|AY143571.1| Codonellopsis americana 18S ribosomal RNA gene, partial sequence Length = 1681 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1403 gctgctggtaatcagcaatatgc 1425
>gb|AY143560.1| Tintinnopsis fimbriata 18S ribosomal RNA gene, partial sequence Length = 1682 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1404 gctgctggtaatcagcaatatgc 1426
>emb|AL590614.8| Mouse DNA sequence from clone RP23-9O16 on chromosome 13 Contains the 3' end of the gene for a novel protein similar to nuclear envelope pore membrane protein POM121, the Prss16 gene for thymus serine protease16, three novel genes, the genes for two H2a, two H2b and one H4 histone family members, a ribosomal protein L37A (Rpl37a) pseudogene, a novel pseudogene, three genes for novel vomeronasal 1 receptor H (V1rh) family members, the gene for a novel vomeronasal 1 receptor I (V1ri) family member, six V1ri pseudogenes, a V1rh pseudogene and six CpG islands, complete sequence Length = 210845 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 aaatgtagcagacaaatag 58 ||||||||||||||||||| Sbjct: 94598 aaatgtagcagacaaatag 94616
>emb|CR450817.6| Zebrafish DNA sequence from clone DKEYP-74B4 in linkage group 25, complete sequence Length = 196897 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ttaaatgtagcagacaaat 56 ||||||||||||||||||| Sbjct: 170775 ttaaatgtagcagacaaat 170793
>gb|AC100814.2| Homo sapiens chromosome 8, clone CTD-3025N20, complete sequence Length = 169537 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcaaaataatatgattcaa 25 ||||||||||||||||||| Sbjct: 97078 tcaaaataatatgattcaa 97096
>gb|AC007729.3| Arabidopsis thaliana chromosome 2 BAC T18C6 genomic sequence, complete sequence Length = 114068 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 tcgagtcataggagctgct 101 ||||||||||||||||||| Sbjct: 100835 tcgagtcataggagctgct 100853
>gb|AC090824.6| Homo sapiens chromosome 17, clone CTD-2532B14, complete sequence Length = 187161 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ttcaacctcagaccctttt 39 ||||||||||||||||||| Sbjct: 96822 ttcaacctcagaccctttt 96804
>gb|AC025505.11| Homo sapiens, clone RP11-651N3, complete sequence Length = 166426 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 ttcaacctcagaccctttt 39 ||||||||||||||||||| Sbjct: 24968 ttcaacctcagaccctttt 24986
>gb|AC092484.1|AC092484 Homo sapiens clone RP11-114K22, complete sequence Length = 73900 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 tggtaatcagcgatatgct 119 ||||||||||||||||||| Sbjct: 64556 tggtaatcagcgatatgct 64538
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 38.2 bits (19), Expect = 6.0 Identities = 42/49 (85%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcg 85 ||||||||||||||| |||||||| ||||| | || ||||||||||| Sbjct: 28942 tttaaatgtagcaga-taatagtggtgctcgtgaattaatgtgtattcg 28989
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 6.0 Identities = 28/31 (90%) Strand = Plus / Plus Query: 99 gctggtaatcagcgatatgctcgtattggtg 129 ||||||||||| ||||||||| |||||||| Sbjct: 11796105 gctggtaatcactgatatgctcatattggtg 11796135
>gb|DQ022066.1| Hypotrichida sp. LPJ-2005 17S ribosomal RNA gene, complete sequence; macronuclear Length = 1770 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1490 gctgctggtaatcagcaatatgc 1512
>gb|DQ022065.1| Oxytricha sp. LPJ-2005 17S ribosomal RNA gene, complete sequence; macronuclear Length = 1774 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1494 gctgctggtaatcagcaatatgc 1516
>gb|DQ019318.1| Pseudourostyla cristata small subunit ribosomal RNA gene, partial sequence; macronuclear Length = 1775 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 1495 gctgctggtaatcagcaatatgc 1517
>gb|AC073410.7| Homo sapiens BAC clone RP11-27M5 from 2, complete sequence Length = 116859 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 36 ttttaaatgtagcagacaaatag 58 ||||||||| ||||||||||||| Sbjct: 77792 ttttaaatgaagcagacaaatag 77770
>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence Length = 179597 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcaaaataatatgattcaa 25 ||||||||||||||||||| Sbjct: 166892 tcaaaataatatgattcaa 166910
>gb|AY149186.1| Uncultured eukaryote DGGE band H8 18S ribosomal RNA gene, partial sequence Length = 330 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 gctgctggtaatcagcgatatgc 118 |||||||||||||||| |||||| Sbjct: 254 gctgctggtaatcagcaatatgc 232
>gb|AC025290.3|F9P14 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 48872 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 aaatcaaaataatatgatt 22 ||||||||||||||||||| Sbjct: 9583 aaatcaaaataatatgatt 9565
>emb|BX005062.4| Zebrafish DNA sequence from clone CH211-95I5 in linkage group 19, complete sequence Length = 170213 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 attcaacctcagacccttttaaa 42 ||||||||||||||| ||||||| Sbjct: 167842 attcaacctcagaccattttaaa 167864
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 tcgagtcataggagctgct 101 ||||||||||||||||||| Sbjct: 172957 tcgagtcataggagctgct 172975
>gb|AC121294.13| Mus musculus chromosome 8, clone RP23-187L12, complete sequence Length = 190298 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gacccttttaaatgtagca 49 ||||||||||||||||||| Sbjct: 143098 gacccttttaaatgtagca 143080
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 6.0 Identities = 28/31 (90%) Strand = Plus / Plus Query: 99 gctggtaatcagcgatatgctcgtattggtg 129 ||||||||||| ||||||||| |||||||| Sbjct: 11874516 gctggtaatcactgatatgctcatattggtg 11874546
>emb|X14062.1|CHCRL14 Chlamydomonas reinhardtii plasti gene for ribosomal protein L14 Length = 988 Score = 38.2 bits (19), Expect = 6.0 Identities = 42/49 (85%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 37 tttaaatgtagcagacaaatagtggngctcgaaanttgatgtgtattcg 85 ||||||||||||||| |||||||| ||||| | || ||||||||||| Sbjct: 541 tttaaatgtagcaga-taatagtggtgctcgtgaattaatgtgtattcg 588 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,149,995 Number of Sequences: 3902068 Number of extensions: 1149995 Number of successful extensions: 82540 Number of sequences better than 10.0: 178 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 81478 Number of HSP's gapped (non-prelim): 965 length of query: 129 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 108 effective length of database: 17,151,101,840 effective search space: 1852318998720 effective search space used: 1852318998720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
