ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 pre... 32 1.8
2ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precu... 32 1.8
3TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylam... 30 5.2
4FPS_DROME (P18106) Tyrosine-protein kinase Fps85D (EC 2.7.10.2) ... 30 8.8

>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC|
            2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene)
          Length = 1254

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/75 (30%), Positives = 29/75 (38%)
 Frame = +2

Query: 206  APLFREPAPFVLLLPNGTQEYTGAESSSPVPSFGTSTCLTPGVSFTGPDLICTYRPLGEA 385
            +PL R      L LP  T  Y    + SP P +     + P    T    +   RP G  
Sbjct: 1107 SPLQRYSEDPTLPLPTETDGYVAPLACSPQPEYVNQPEVRPQPPLTPEGPLPPVRPAGAT 1166

Query: 386  LELPRTALPTLLSVV 430
            LE P+T  P    VV
Sbjct: 1167 LERPKTLSPGKNGVV 1181



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>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC|
            2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene)
            (Epidermal growth factor receptor-related protein)
          Length = 1257

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/75 (30%), Positives = 30/75 (40%)
 Frame = +2

Query: 206  APLFREPAPFVLLLPNGTQEYTGAESSSPVPSFGTSTCLTPGVSFTGPDLICTYRPLGEA 385
            +PL R      L LP  T  Y    + SP P +   + + P    T    +   RP G  
Sbjct: 1109 SPLQRYSEDPTLPLPPETDGYVAPLACSPQPEYVNQSEVQPQPPLTPEGPLPPVRPAGAT 1168

Query: 386  LELPRTALPTLLSVV 430
            LE P+T  P    VV
Sbjct: 1169 LERPKTLSPGKNGVV 1183



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>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline|
           chlorohydrolase)
          Length = 476

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 224 PAPFVLLLPNGTQEYTGAESSSPVPSFGTSTCLTPGVSFTGPDLICTYRPLGEALELPRT 403
           P PFVL  P  +   T   ++SP P         PG  FT   +   Y  +    + PR 
Sbjct: 111 PKPFVLASPLSSTTRTSDPTTSPAPG-------PPGSPFTDAGIRAIYARM--YFDAPRA 161

Query: 404 ALPTLLSVVLAEKVASLMLLEGAWT 478
            L  L++ + A+   ++ + E A T
Sbjct: 162 ELEELVATIHAKAPGAVRMDESAST 186



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>FPS_DROME (P18106) Tyrosine-protein kinase Fps85D (EC 2.7.10.2) (dFer)|
          Length = 1325

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 159 RFMQLQPSESSTKSIMLLCSENLHHLCSYFP-TEHRSTQARNRHHLSHRLAPVHALPQE 332
           RF +LQP   S  S+ ++   N      Y P T HR  QA + H+L   +A     P +
Sbjct: 477 RFNKLQPRSQSLGSLSVIRDGNGPSPARYEPITNHRLRQAASVHYLGEEIATSSTNPPD 535


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,832,129
Number of Sequences: 219361
Number of extensions: 2163555
Number of successful extensions: 4994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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