ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1l23 |
|---|---|
| Clone Library Name | barley_pub |
>ARPC2_DICDI (O96623) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) Length = 293 Score = 123 bits (309), Expect = 5e-28 Identities = 68/150 (45%), Positives = 100/150 (66%), Gaps = 3/150 (2%) Frame = -1 Query: 651 LAPQADKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSPV-PPLELKG 475 L PQ D V V++ + F+D+ D++L+ FLQ FV+ R+T ++N PS +S PPLELKG Sbjct: 147 LKPQGDNVIVIFDIAFKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKG 204 Query: 474 VNA-DALDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRR 298 V A AN GFV+FV+FP H+ +K ++ + TF Y+ YH+KC++G+MHT MR R Sbjct: 205 VKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNR 262 Query: 297 VESLIQALDRAKSD-AEKLKKLVHGGSFRR 211 VESLIQ L+RAK + +K+ + G F++ Sbjct: 263 VESLIQVLNRAKPEPVNTVKRTITGKFFKQ 292
>ARPC2_PONPY (Q5R5Z5) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) Length = 300 Score = 115 bits (288), Expect = 1e-25 Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 2/142 (1%) Frame = -1 Query: 636 DKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSP-VPPLELKGVNADA 460 D+VTVV+ F+D D+V+ F+QEF E RR A + AP ++S PPLELK +A A Sbjct: 159 DRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRR--ASHTAPQVLFSHREPPLELKDTDA-A 215 Query: 459 LDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQ 280 + N G++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++ Sbjct: 216 VGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK 275 Query: 279 ALDRAKSDAEKLK-KLVHGGSF 217 L+RA+ DAEK + K + G +F Sbjct: 276 VLNRARPDAEKKEMKTITGKTF 297
>ARPC2_HUMAN (O15144) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) Length = 300 Score = 115 bits (288), Expect = 1e-25 Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 2/142 (1%) Frame = -1 Query: 636 DKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSP-VPPLELKGVNADA 460 D+VTVV+ F+D D+V+ F+QEF E RR A + AP ++S PPLELK +A A Sbjct: 159 DRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRR--ASHTAPQVLFSHREPPLELKDTDA-A 215 Query: 459 LDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQ 280 + N G++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++ Sbjct: 216 VGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK 275 Query: 279 ALDRAKSDAEKLK-KLVHGGSF 217 L+RA+ DAEK + K + G +F Sbjct: 276 VLNRARPDAEKKEMKTITGKTF 297
>ARPC2_CAEEL (Q8WTM6) Probable actin-related protein 2/3 complex subunit 2| (ARP2/3 complex 34 kDa subunit) (p34-ARC) Length = 301 Score = 115 bits (287), Expect = 2e-25 Identities = 56/144 (38%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Frame = -1 Query: 642 QADKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWS-PVPPLELKGVNA 466 +AD+VTV++ F+D+ D+++ FLQEF E R+ A AP+ ++S PPLELK + Sbjct: 158 KADRVTVIFSTVFKDADDVIIGKVFLQEFREGRK--ASQTAPAVLYSLGEPPLELKDLPE 215 Query: 465 DALDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESL 286 + N G++TFV+FPRH + D T+ + +F Y+ YH+KCS+ ++HTRMR + Sbjct: 216 ARVGDNVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDF 275 Query: 285 IQALDRAKSDAEKLKKLVHGGSFR 214 ++ L+RA+ + + KK HG +F+ Sbjct: 276 LKVLNRARPEVKGEKKTFHGRTFQ 299
>ARPC2_MOUSE (Q9CVB6) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) (Fragment) Length = 191 Score = 110 bits (275), Expect = 4e-24 Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 1/129 (0%) Frame = -1 Query: 636 DKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSP-VPPLELKGVNADA 460 D+VTVV+ F+D D+V+ F+QEF E RR A + AP ++S PPLELK +A A Sbjct: 66 DRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRR--ASHTAPQVLFSHREPPLELKDTDA-A 122 Query: 459 LDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQ 280 + N G++TFV+FPRH D T+ + TF Y+ YH+KCS+ ++HTRMR + ++ Sbjct: 123 VGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLK 182 Query: 279 ALDRAKSDA 253 L+RA+ DA Sbjct: 183 VLNRARPDA 191
>ARPC2_YEAST (P53731) ARP2/3 complex 34 kDa subunit (p34-ARC)| Length = 342 Score = 110 bits (274), Expect = 5e-24 Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 4/138 (2%) Frame = -1 Query: 651 LAPQADKVTVVYPMRFQDSIDIVLATSFLQEFVEAR-RTAALNNAPSCMWSPVPPLELKG 475 + P D+VT+++ FQD D + FLQEFV+AR R + +AP ++S PPLELK Sbjct: 180 IKPSNDRVTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPPLELKR 239 Query: 474 VNAD--ALDANAGFVTFVVFPRHVEGRKLD-KTVWSLLTFHAYVSYHVKCSEGFMHTRMR 304 + + + F+TFV+FPRH + ++L ++ L F Y YH+KCS+ +MH+RMR Sbjct: 240 LYQPPKVAEQSRRFITFVLFPRHFQTKELQFHSICQLTLFRNYFHYHIKCSKAYMHSRMR 299 Query: 303 RRVESLIQALDRAKSDAE 250 RV+S I+ L+RAK D + Sbjct: 300 FRVDSFIKVLNRAKVDED 317
>ARPC2_SCHPO (O14241) ARP2/3 complex 34 kDa subunit (p34-ARC)| Length = 317 Score = 107 bits (268), Expect = 3e-23 Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Frame = -1 Query: 651 LAPQADKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWS-PVPPLELKG 475 L P+ D+VTVV+ +F++ D + FLQEFV+ARR A+ AP ++S PPLE++ Sbjct: 169 LWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRD 228 Query: 474 VNADALDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRV 295 + + GFVTFV+F RH + + + + F + +H+K S+ +MH RMR+RV Sbjct: 229 IQGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRV 288 Query: 294 ESLIQALDRAKSDAEKLKKLVHGGSFRR 211 + L+RAK D E +K G SF R Sbjct: 289 ADFQKVLNRAKPDVELERKTATGRSFVR 316
>ARPC2_DROME (Q9VIM5) Probable actin-related protein 2/3 complex subunit 2| (ARP2/3 complex 34 kDa subunit) (p34-ARC) Length = 301 Score = 104 bits (259), Expect = 3e-22 Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Frame = -1 Query: 636 DKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSP-VPPLELKGVNADA 460 D+VTVV+ F+D D+++ F+QE E RR A + AP ++S PPLEL +A Sbjct: 159 DRVTVVFSTIFRDEDDVIIGKVFMQELREGRR--ASHTAPQVLFSHREPPLELANTDARV 216 Query: 459 LDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQ 280 D N G+VTFV+FPRH D T+ + F Y+ YH+KCS+ ++H+RMR + ++ Sbjct: 217 GD-NIGYVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLK 275 Query: 279 ALDRAKSDAEKL-KKLVHGGSFRRL 208 L+RA+ + + KK + G +F+R+ Sbjct: 276 VLNRARPEPKNTEKKTITGRTFKRI 300
>ARPC2_ANOGA (Q7PVX8) Probable actin-related protein 2/3 complex subunit 2| (ARP2/3 complex 34 kDa subunit) (p34-ARC) Length = 304 Score = 99.8 bits (247), Expect = 7e-21 Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 2/144 (1%) Frame = -1 Query: 636 DKVTVVYPMRFQDSIDIVLATSFLQEFVEARRTAALNNAPSCMWSP-VPPLELKGVNADA 460 D+VTVV+ F+D D+VL F+QE E RR A + AP ++S PPLEL A Sbjct: 162 DRVTVVFSTIFRDEDDVVLGKVFMQELREGRR--ASHTAPQVLFSHREPPLELANTGA-R 218 Query: 459 LDANAGFVTFVVFPRHVEGRKLDKTVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQ 280 + N G+VTFV+FPRH D T+ + F Y+ YH+KCS+ ++H+RMR + ++ Sbjct: 219 VGENIGYVTFVLFPRHTAKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTTEFLK 278 Query: 279 ALDRAKSDAE-KLKKLVHGGSFRR 211 L+RA+ + + KK + G +F R Sbjct: 279 VLNRARPEPKITEKKTITGRTFIR 302
>UVRB_CHLCH (Q3ATT8) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 681 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 117 LLVEHLFQLPVRLGWQPLRQHEHPTVCPSLVCL 19 +LVEH F+LP L +PLR E+ + P ++C+ Sbjct: 364 VLVEHGFRLPSALDNRPLRFEEYEEMVPQVICI 396
>YGL0_YEAST (P53137) Hypothetical 72.0 kDa protein in TAF60-MLC1 intergenic| region Length = 624 Score = 32.3 bits (72), Expect = 1.4 Identities = 19/97 (19%), Positives = 48/97 (49%) Frame = -1 Query: 387 TVWSLLTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKSDAEKLKKLVHGGSFRRL 208 ++W+L+ YV + G + ++ R+ + LD++ + LK+L+ G F+R+ Sbjct: 129 SLWNLIK--VYVRRNPDSIRGLIDGSLKPRINTQRVQLDKSYQVQQHLKQLIESGKFKRI 186 Query: 207 SMKHEGDSRH*RKTRTSKYMKVLLNFPSWVLLVEHLF 97 ++ D + + +K+ + +W+ ++E L+ Sbjct: 187 DLRCVEDLLSAKSMQPNKFAENFFT-ANWIEILEALW 222
>UVRB_CHLTE (Q8KC79) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 684 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1 Query: 117 LLVEHLFQLPVRLGWQPLRQHEHPTVCPSLVCL 19 +LVEH F+LP L +PLR E + P ++C+ Sbjct: 366 VLVEHGFRLPSALDNRPLRFEEFEEMVPQVICV 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,704,058 Number of Sequences: 219361 Number of extensions: 2075913 Number of successful extensions: 6193 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6151 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
