ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1l22 |
|---|---|
| Clone Library Name | barley_pub |
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 35.0 bits (79), Expect = 0.19 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = -2 Query: 577 QGHEVEHQHQGRGGLPRLRHREQ-----GHWPGHQ------ALPRPVPPCASGAVQPGLP 431 +GH+ +HQHQ P HR+Q GH HQ A PR S + Sbjct: 176 RGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGSNQGHSSSRHQADS 235 Query: 430 GRVGAVDGEQGRGQ 389 RV A G GRGQ Sbjct: 236 PRVSARSGSGGRGQ 249
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 33.5 bits (75), Expect = 0.55 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = -2 Query: 613 AGQPQGRLPALDQGHEVEHQHQGRGGLPRL-----RHREQGHWPGHQALPRPVPPCASGA 449 +GQ QG QG E +Q + G P +++ +G QA P P+PP +G+ Sbjct: 345 SGQQQGGHQQGRQGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQPAGS 404 Query: 448 VQPGLPGRVGAV 413 ++ G G+ G V Sbjct: 405 IKRGTIGKPGQV 416
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 32.7 bits (73), Expect = 0.93 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 631 GKGGARA--GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-P 467 GK G R G P PA G G G P EQG PG Q LP P P Sbjct: 158 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG-PAGERGEQGPAGSPGFQGLPGPAGP 216 Query: 466 PCASGAV-QPGLPGRVGAVDGEQGRGQR 386 P +G + G+PG +GA RG+R Sbjct: 217 PGEAGKPGEQGVPGDLGAPGPSGARGER 244
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 32.7 bits (73), Expect = 0.93 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 631 GKGGARA--GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-P 467 GK G R G P PA G G G P EQG PG Q LP P P Sbjct: 589 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG-PAGERGEQGPAGSPGFQGLPGPAGP 647 Query: 466 PCASGAV-QPGLPGRVGAVDGEQGRGQR 386 P +G + G+PG +GA RG+R Sbjct: 648 PGEAGKPGEQGVPGDLGAPGPSGARGER 675
>ACSA_DROME (Q9VP61) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) Length = 670 Score = 32.7 bits (73), Expect = 0.93 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 501 GQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 397 G +++ + SH R+ P PD ++E + WT+ RD Sbjct: 221 GHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDRD 255
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 32.7 bits (73), Expect = 0.93 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 631 GKGGARA--GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-P 467 GK G R G P PA G G G P EQG PG Q LP P P Sbjct: 582 GKAGERGVPGPPGAVGPAGKDGEAGAQGAPGPAG-PAGERGEQGPAGSPGFQGLPGPAGP 640 Query: 466 PCASGAV-QPGLPGRVGAVDGEQGRGQR 386 P +G + G+PG +GA RG+R Sbjct: 641 PGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 32.7 bits (73), Expect = 0.93 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 631 GKGGARA--GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-P 467 GK G R G P PA G G G P EQG PG Q LP P P Sbjct: 582 GKAGERGLPGPPGAVGPAGKDGEAGAQGAPGPAG-PAGERGEQGPAGSPGFQGLPGPAGP 640 Query: 466 PCASGAV-QPGLPGRVGAVDGEQGRGQR 386 P +G + G+PG +GA RG+R Sbjct: 641 PGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 32.7 bits (73), Expect = 0.93 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -2 Query: 631 GKGGARA--GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-P 467 GK G R G P PA G G G P EQG PG Q LP P P Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG-PAGERGEQGPAGSPGFQGLPGPAGP 651 Query: 466 PCASGAV-QPGLPGRVGAVDGEQGRGQR 386 P +G + G+PG +GA RG+R Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGER 679
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -2 Query: 550 QGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 398 QG GG + G+ PG Q L P A+ A PG G G G+QG Sbjct: 218 QGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQG 268
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = -3 Query: 552 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 406 I+ ++ + A+VN + +H L Q +HP + P NP+ D L+ Sbjct: 354 IEVQKSWGLGAVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 413 Query: 405 SRDVGNGFRCVRMVNNIYLNFDA 337 R++GNGF + + FDA Sbjct: 414 GREIGNGFSELNDAEDQAARFDA 436
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 31.6 bits (70), Expect = 2.1 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Frame = -2 Query: 631 GKGGARAGQPQGRLPAL--DQGHEVEHQHQGRGGLP-----RLRHREQG--HWPGHQALP 479 G+ G++ + LP L D+GH E QG GLP R E G PG +A P Sbjct: 590 GESGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPG-EAGP 648 Query: 478 RPVPPCASGAVQPGLPGRVGAVDGEQG 398 R + PG PG +G +DG QG Sbjct: 649 RGLLGPRGTPGPPGQPG-IGGIDGPQG 674
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.6 bits (70), Expect = 2.1 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Frame = -2 Query: 631 GKGGAR-AGQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHW--PGHQALPRPV-PP 464 GK G R A P G + A + E Q P EQG PG Q LP P PP Sbjct: 582 GKPGERGAPGPPGAVGAAGKDGEAGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPP 641 Query: 463 CASGAV-QPGLPGRVGAVDGEQGRGQR 386 +G + G+PG GA RG+R Sbjct: 642 GEAGKPGEQGVPGNAGAPGPAGARGER 668
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 31.2 bits (69), Expect = 2.7 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 12/82 (14%) Frame = -2 Query: 610 GQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQAL------------PRPVP 467 GQP G+ P QG Q G P + + G +P Q + P P Sbjct: 153 GQP-GQYPPQQQGQYPPQQPGQPGAYPPQQPGQPGAYPPQQGVQNTLAKTGAPGQPGVPP 211 Query: 466 PCASGAVQPGLPGRVGAVDGEQ 401 P + QPG+P + GA G+Q Sbjct: 212 PQGAYPGQPGVPPQQGAYPGQQ 233
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/50 (44%), Positives = 22/50 (44%) Frame = -2 Query: 547 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 398 G GG L G PG ALP VP GAV LPG V V G G Sbjct: 490 GAGGAGTLGGLVPGAVPG--ALPGAVPGALPGAVPGALPGAVPGVPGTGG 537
>TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox protein| Hox-11L1) (Homeobox TLX-2) (PMUR10F) Length = 284 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/73 (36%), Positives = 34/73 (46%) Frame = -2 Query: 634 NGKGGARAGQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCAS 455 +G GA P G L +L +G V G GG+ R+ P H+ LP P P A+ Sbjct: 52 SGFHGASGYAPAGSLASLPRGSGV-----GPGGVIRV--------PAHRPLPVPPPSGAA 98 Query: 454 GAVQPGLPGRVGA 416 AV PG G GA Sbjct: 99 PAV-PGPSGLGGA 110
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +3 Query: 399 PCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 500 P PS P PGSPG + P +G G WPG Sbjct: 370 PQGPSGPPGVPGSPGSSRPGLRGAPG-----WPG 398
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = +3 Query: 384 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 500 S PRP AP RPGSP AP GG +G PG Sbjct: 195 SNIPRP-----APPRPGSPRIGAPRPGGGQRQGGGGRPG 228
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 30.4 bits (67), Expect = 4.6 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%) Frame = -2 Query: 604 PQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPV-PPCASGAV------ 446 P G P + +G + E G G+ R + PG LP P PP +GA Sbjct: 1433 PPGAQPIVQRGEKGEMGPMGAPGI-----RGEKGLPGLDGLPGPSGPPGFAGAKGRDGFP 1487 Query: 445 -QPGLPGRVGA 416 QPG+PG GA Sbjct: 1488 GQPGMPGEKGA 1498
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +3 Query: 384 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 482 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +3 Query: 384 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 482 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 477 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -3 Query: 303 DGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCM------HGSRTYAWTCIG 157 DGT++ LW G NQ+W AG+ D+C+ +GS+ ++C G Sbjct: 374 DGTQLQLWDCHSGTNQQWAATD---AGELRVYGDKCLDAAGTSNGSKVQIYSCWG 425
>META_ERWCT (Q6D009) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine| O-transsuccinylase) (HTS) Length = 309 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = -3 Query: 462 VRLVPYNPDFLDESVLWTESRDVGNGFRCVRMVNNIYLNFDALNGDKYHGGVRDGTEVVL 283 +RL+ +P +D +L +SR+ N +NN Y NFD + + + G + G + L Sbjct: 55 LRLLSNSPLQIDIQLLRIDSRESKN--TPTEHLNNFYCNFDDIQDENFDGLIVTGAPLGL 112 Query: 282 WKWCE 268 +C+ Sbjct: 113 VDFCD 117
>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven| Length = 362 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = -2 Query: 631 GKGGARAGQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALP 479 G GG R G+ +GR G +G GG PR RE G W + P Sbjct: 45 GDGGGRRGRGRGR------GFRGARGGRGGGGAPRGSRREPGGWGAGASAP 89
>SPR2F_MOUSE (O70557) Small proline-rich protein 2F| Length = 76 Score = 30.0 bits (66), Expect = 6.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +3 Query: 387 RCPRPCSPSTAPTRPGSPGCTAP 455 +CP PCSPS P P C P Sbjct: 22 KCPEPCSPSVCPEPCPPPKCPEP 44
>YB50_METTW (Q50519) Hypothetical UPF0051 protein MTH1150 homolog (ORF2)| Length = 410 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = -3 Query: 639 CATAKVVLAPANPKDDYQHWIKDMRWSTSIKDEEGYPAFAIVNKATGQ 496 CA+ + + N D W+KD W D + Y A + +A G+ Sbjct: 81 CASESIEIMGMNVALDRYSWLKDYMWKAVAVDTDKYTATTALREAEGE 128
>Y1150_METTH (O27218) Hypothetical UPF0051 protein MTH1150| Length = 410 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = -3 Query: 639 CATAKVVLAPANPKDDYQHWIKDMRWSTSIKDEEGYPAFAIVNKATGQ 496 CA+ + + N D W+KD W D + Y A + +A G+ Sbjct: 81 CASESIEIMGMNVALDKYSWLKDYMWKAVAVDTDKYTATTALREAEGE 128
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +3 Query: 393 PRPCSPSTAPTRPGSPGCT-APDAQGGTGRGSA 488 P P P +P +PG PG AP A G G+G++ Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGAS 136
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -2 Query: 577 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 404 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 266 RGFDGRNGEKGETGAPGLKG--ENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGND 323 Query: 403 QGRG 392 RG Sbjct: 324 GARG 327
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 25.0 bits (53), Expect(2) = 7.1 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%) Frame = +3 Query: 396 RPCSPSTAP----------TRPGSPGCTAPDAQGGT 473 RP STAP TRP +PG TAP A G T Sbjct: 905 RPAPGSTAPPAHGVTSAPDTRP-APGSTAPPAHGVT 939 Score = 23.1 bits (48), Expect(2) = 7.1 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +1 Query: 460 HRVGLAEGVLDGLASGLVHDG 522 H V A G G AS LVH+G Sbjct: 956 HNVTSASGSASGSASTLVHNG 976
>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)| Length = 285 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = -3 Query: 336 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCMHGSRTYAW 169 LN D++ + +VLW+W + Q+W I+ Y + A + +C +R W Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE--YNETKSAYTL-KCQENNRYLTW 209
>RL25_MYCTU (P66121) 50S ribosomal protein L25 (General stress protein CTC)| Length = 215 Score = 29.6 bits (65), Expect = 7.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 631 GKGGARAGQPQGRLPALDQGHEVEHQH 551 GKG +R + G++PA+ GH E QH Sbjct: 18 GKGASRRARRAGKIPAVLYGHGAEPQH 44
>RL25_MYCBO (P66122) 50S ribosomal protein L25 (General stress protein CTC)| Length = 215 Score = 29.6 bits (65), Expect = 7.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 631 GKGGARAGQPQGRLPALDQGHEVEHQH 551 GKG +R + G++PA+ GH E QH Sbjct: 18 GKGASRRARRAGKIPAVLYGHGAEPQH 44
>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)| chain) Length = 1142 Score = 29.6 bits (65), Expect = 7.9 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Frame = -2 Query: 640 VRNGKGGARAGQPQGRLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPV--- 470 ++ +G A + P+G P D G EH G+ G+ + + G G LP P Sbjct: 523 LKGQQGSAGSMGPRG--PPGDVGLPGEHGIPGKQGI-KGEKGDPGGIIGPPGLPGPKGEA 579 Query: 469 -PPCASGAVQPGLPGRVGAVDGEQGRGQRLQVRAHG 365 PP S +PGL G GA +G+R HG Sbjct: 580 GPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHG 615
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -2 Query: 577 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 404 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 403 QGRG 392 RG Sbjct: 323 GARG 326
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -2 Query: 577 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 404 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 110 RGFDGRNGEKGEPGAPGLKG--ENGVPGEDGAPGPMGPRGAPGERGRPGLPGAAGARGND 167 Query: 403 QGRG 392 RG Sbjct: 168 GARG 171
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 29.6 bits (65), Expect = 7.9 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = -2 Query: 634 NGKGGARAGQPQGRLPALDQGHEVEHQHQ---GRGGLPRLRHREQGHWPGHQALPRPVPP 464 N +GG+ G +G + D+G H+ GRGG P R R +G GH P Sbjct: 697 NLRGGSHHGGERGGMRGGDRGPPPPPFHRNRGGRGGEPGYRGRGRGGERGH--------P 748 Query: 463 CASGAVQPGLPGRVGAVDGEQGRGQRLQVRAHG 365 +G G G +G +G G R HG Sbjct: 749 GRNGPYGMGHGDHRGH-EGHRGHGGHGDHRGHG 780
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -2 Query: 577 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 404 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 403 QGRG 392 RG Sbjct: 323 GARG 326
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 7.9 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Frame = -2 Query: 550 QGRGGLPRLRHREQGHWPGHQALPR----------PVPPCASGAVQPGLPG-----RVGA 416 QG GLP + Q PG P P PP G +PG PG +G Sbjct: 307 QGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGG 366 Query: 415 VDGEQG-RGQRLQVRAHG 365 V G G RG++ V A G Sbjct: 367 VPGALGPRGEKGPVGAPG 384
>RL25_NOCFA (Q5YPZ5) 50S ribosomal protein L25 (General stress protein CTC)| Length = 200 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 631 GKGGARAGQPQGRLPALDQGHEVEHQH 551 GKG AR + G +PA+ GH+ E QH Sbjct: 16 GKGAARRTRRAGNVPAVLYGHQSEPQH 42
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = -2 Query: 559 HQHQGRGGLPRLRHREQGHWPGH-------QALPRPVPPCASGAVQPGLPGRVGA 416 +Q G GG P + G +PGH QA P P P + PG PG GA Sbjct: 27 NQPAGPGGYPGAAY--PGAYPGHAPGAYPGQAPPGPYPGPGAHGAYPGQPGGPGA 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,684,641 Number of Sequences: 219361 Number of extensions: 1787968 Number of successful extensions: 7849 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 6706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7794 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
