Clone Information

BLAST Search Result

Clone Name	rbasd2a21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (F...	39	0.019
2	STP2_MACMU (Q9N1A3) Nuclear transition protein 2 (TP-2) (TP2) (F...	37	0.057
3	STP2_MACFA (Q8WNV1) Nuclear transition protein 2 (TP-2) (TP2)	37	0.074
4	STP2_PONPY (Q9N1A4) Nuclear transition protein 2 (TP-2) (TP2) (F...	36	0.096
5	STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (F...	36	0.13
6	KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)	33	0.63
7	FBIC_MYCTU (O50429) FO synthase (EC 2.5.1.-) (7,8-didemethyl-8-h...	33	0.63
8	FBIC_MYCBO (Q7U0G9) FO synthase (EC 2.5.1.-) (7,8-didemethyl-8-h...	33	0.63
9	COL2_CAEEL (P17656) Cuticle collagen 2 precursor	33	0.63
10	STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (F...	33	1.1
11	MARK4_MOUSE (Q8CIP4) MAP/microtubule affinity-regulating kinase ...	32	1.4
12	FBIC_MYCLE (Q9CBX6) FO synthase (EC 2.5.1.-) (7,8-didemethyl-8-h...	32	1.4
13	ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot...	32	1.4
14	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	32	1.8
15	MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase ...	32	2.4
16	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	32	2.4
17	FBIC_MYCPA (Q73WP9) FO synthase (EC 2.5.1.-) (7,8-didemethyl-8-h...	32	2.4
18	YQM4_SCHPO (Q9UU83) Protein P1E11.04c in chromosome III	32	2.4
19	UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-intera...	32	2.4
20	PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor	32	2.4
21	SNTB2_HUMAN (Q13425) Beta-2-syntrophin (59 kDa dystrophin-associ...	31	3.1
22	HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histid...	31	3.1
23	SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysi...	31	3.1
24	POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocaps...	31	3.1
25	CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog	31	3.1
26	MUC13_RAT (P97881) Mucin-13 precursor	31	3.1
27	GAG_WMSV (P03330) Gag polyprotein [Contains: Core protein p15; I...	31	4.1
28	FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leuc...	31	4.1
29	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	31	4.1
30	YHL1_EBV (P03181) Hypothetical protein BHLF1	31	4.1
31	UL31_HCMVA (P16848) Hypothetical protein UL31 precursor	31	4.1
32	POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps...	30	5.3
33	POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocaps...	30	5.3
34	POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocaps...	30	5.3
35	PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-c...	30	5.3
36	MAGB6_HUMAN (Q8N7X4) Melanoma-associated antigen B6 (MAGE-B6 ant...	30	5.3
37	ATPF2_HUMAN (Q8N5M1) ATP synthase mitochondrial F1 complex assem...	30	5.3
38	MURG_MYCPA (Q73YQ8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe...	30	5.3
39	CYB_PARMU (Q9MLJ1) Cytochrome b	30	5.3
40	ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop...	30	5.3
41	DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-)...	30	5.3
42	RDRP_NODAV (Q9IMM4) RNA-directed RNA polymerase (EC 2.7.7.48) (R...	30	6.9
43	HIC2_BRARE (Q90W33) Hypermethylated in cancer 2 protein	30	6.9
44	AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3...	30	6.9
45	NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-...	30	6.9
46	DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)	30	6.9
47	PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:...	30	6.9
48	AMEL_CAVPO (Q9Z0K9) Amelogenin precursor	30	6.9
49	INVS_MOUSE (O89019) Inversin (Inversion of embryo turning protei...	30	6.9
50	CYB_AUSSU (Q9MLL3) Cytochrome b	30	6.9
51	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	30	6.9
52	WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC...	30	6.9
53	SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor	30	6.9
54	MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1	30	6.9
55	CYB_NAJNI (Q9MLK1) Cytochrome b	30	6.9
56	CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa colle...	30	9.0
57	USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A p...	30	9.0
58	IE18_PRVIF (P11675) Immediate-early protein IE180	30	9.0
59	GSK3H_DROME (P83101) Putative glycogen synthase kinase-3 homolog...	30	9.0
60	IE18_PRVKA (P33479) Immediate-early protein IE180	30	9.0
61	Y4628_STRCO (Q04296) Putative HTH-type transcriptional regulator...	30	9.0

>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 173 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 352
           T+T++ PI        S  +  TC+HHR T S  C ++      + +S   Q PA  R+P
Sbjct: 3   TKTHSLPITHTQLHSNSQPQSCTCTHHRQTFSQSCRQSHRGSRSRSSS---QSPASHRNP 59

Query: 353 SHGDSAPSTQGQ*SRRPTGGP 415
           +    A S+ G  S+ P   P
Sbjct: 60  T---GAHSSSGHQSQSPNTSP 77

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>STP2_MACMU (Q9N1A3) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 137

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
 Frame = +2

Query: 173 TRTNTTPI----LLCSEQKQSST-KEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPA 337
           T+T++ PI    L  + + QS T  + TC+HHR T S  C ++   Q    + +  Q PA
Sbjct: 3   TKTHSLPITHTQLHSNSRPQSRTCSQCTCTHHRQTFSQSCRQS---QRGSRSRSSSQSPA 59

Query: 338 PTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 472
             ++P+   S+   Q Q        P+++  P   +K +     PT+P
Sbjct: 60  THQNPTGAHSSSGLQSQ-------SPNASPPPKRHKKTMNSHHSPTRP 100

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>STP2_MACFA (Q8WNV1) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 141

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
 Frame = +2

Query: 173 TRTNTTPIL---LCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPT 343
           T+T++ PI    L S  +  S  + TC+HH  T S  C ++   Q    + +  Q PA  
Sbjct: 3   TKTHSLPITHTQLHSNSRPQSRSQCTCTHHCQTFSQSCRQS---QRGSRSRSSSQSPATH 59

Query: 344 RSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 472
           ++P+   S+   Q Q        P+++  P   +K +     PT+P
Sbjct: 60  QNPTGAHSSSGCQSQ-------SPNASPPPKRHKKTMNSHHSPTRP 98

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>STP2_PONPY (Q9N1A4) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 138

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
 Frame = +2

Query: 173 TRTNTTPI----LLCSEQKQSSTKEP-TCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPA 337
           T+T++ PI    L  + Q QS T  P TC+ HR T S  C ++   Q    +    Q PA
Sbjct: 3   TKTHSLPITHTQLHSNSQPQSRTCSPCTCTRHRQTFSQSCRQS---QRGSWSQNSSQSPA 59

Query: 338 PTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 472
              +P+   S+   Q Q        P+ +  P   +K +     PT+P
Sbjct: 60  SHHNPTGAHSSSGHQSQ-------SPNDSPPPKRHKKTMNSHHSPTRP 100

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>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +2

Query: 173 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 352
           T+T++ PI        S  +  TC+ HR T S  C ++      + +S   Q PA  R+P
Sbjct: 3   TKTHSLPITHTQLHSNSQPQSCTCTRHRQTFSQSCRQSHCGSRSRSSS---QSPASHRNP 59

Query: 353 SHGDSAPSTQGQ*SRRPTGGP 415
           +    A S+ G  S+ P   P
Sbjct: 60  T---GAHSSSGHQSQSPNTSP 77

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>KPC1_COCHE (O42632) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1174

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 332 PAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           P P R PS+  SA S     +   T G +S  AP SP     PP+ P
Sbjct: 651 PGPPRQPSYPSSATSVDAARASYSTTGTASTGAPTSPTSGSRPPSGP 697

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>FBIC_MYCTU (O50429) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 856

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
 Frame = -2

Query: 587 GALQPHLPFIPFXXXXXXXXXXLAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 408
           G + P LP   +           AV+    ++  H  SP+ +   V   G  + + + GL
Sbjct: 603 GGIDPELPVTGYADLVR------AVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLIGL 656

Query: 407 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 252
           + AG  T PG   + L   V  WVL  G       I+++  A   GL  +S   YG  D
Sbjct: 657 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVD 714

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>FBIC_MYCBO (Q7U0G9) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 856

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
 Frame = -2

Query: 587 GALQPHLPFIPFXXXXXXXXXXLAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 408
           G + P LP   +           AV+    ++  H  SP+ +   V   G  + + + GL
Sbjct: 603 GGIDPELPVTGYADLVR------AVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLIGL 656

Query: 407 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 252
           + AG  T PG   + L   V  WVL  G       I+++  A   GL  +S   YG  D
Sbjct: 657 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVD 714

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>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPT 466
           GP     P+  D AP T G     P G P +A APG+     GP T
Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269

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>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +2

Query: 173 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 352
           T+T++ PI        S  +  TC+ H  T S  C ++      + +S   Q PA  R+P
Sbjct: 3   TKTHSLPITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSS---QSPASHRNP 59

Query: 353 SHGDSAPSTQGQ*SRRPTGGP 415
           +    A S+ G  S+ P   P
Sbjct: 60  T---GAHSSSGHQSQSPNTSP 77

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>MARK4_MOUSE (Q8CIP4) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)|
          Length = 752

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 194 ILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSPSHGDSAP 373
           + L   +  S T   T S   S+H+ G   + +   +Q   ++F GP+P  +P H   +P
Sbjct: 382 LALARVRAPSDTTNGTSSSKGSSHNKGQRASSSTYHRQRRHSDFCGPSP--APLHPKRSP 439

Query: 374 STQGQ---*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           ++ G       R  G  +S  A GS  + L PP+ P
Sbjct: 440 TSTGDTELKEERMPGRKASCSAVGSGSRGL-PPSSP 474

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>FBIC_MYCLE (Q9CBX6) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 863

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
 Frame = -2

Query: 587 GALQPHLPFIPFXXXXXXXXXXLAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 408
           G + P LP   +           AV+    ++  H  SP+ +   V   G+ + + +  L
Sbjct: 610 GGIDPELPVTGYVDLVR------AVKTRVPSMHVHAFSPMEIANGVAKSGFSIREWLISL 663

Query: 407 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 252
           + AG  T PG   + L   V  WVL  G       I+++  A   GL  +S   YG  D
Sbjct: 664 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSMWIEIVTTAHEVGLRSSSTMMYGHVD 721

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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 332 PAPTRSPSHGDSAPSTQGQ*SRRPTGG--PSSAVAPGSPRKRLGPPTKP 472
           P P + PS     P TQ   +RRP GG  P +   PG       PP  P
Sbjct: 4   PQPLQQPSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLATSAAPPGPP 52

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 293 QQTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRP-TGGPSSAVAPGSPRKRLGPPT 466
           Q T+Q +     GPAPT++          QG   + P   GP+   +   P  R GPPT
Sbjct: 562 QATRQAS---ISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPT 617

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>MARK4_HUMAN (Q96L34) MAP/microtubule affinity-regulating kinase 4 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase-like 1)
          Length = 752

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 194 ILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSPSHGDSAP 373
           + L   +  S T   T S   ++HS G   + +   +Q   ++F GP+P  +P H   +P
Sbjct: 382 LALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDFCGPSP--APLHPKRSP 439

Query: 374 STQGQ---*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           ++ G+      R  G  +S    GS  + L PP+ P
Sbjct: 440 TSTGEAELKEERLPGRKASCSTAGSGSRGL-PPSSP 474

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = +2

Query: 332 PAPTRSPSH--GDSAPSTQGQ*--SRRPTGGPSS-----AVAPGSPRKRLGPP 463
           P+PT +P      +AP TQGQ   SR   GGP +       A  SP+++ GPP
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPP 561



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 293 QQTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRP-TGGPSSAVAPGSPRKRLGPPT 466
           Q T+Q   T   GPAP ++          QG   + P   GP+   +   P  R GPPT
Sbjct: 562 QATRQ---TSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPT 617

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>FBIC_MYCPA (Q73WP9) FO synthase (EC 2.5.1.-)|
           (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase)
          Length = 867

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
 Frame = -2

Query: 587 GALQPHLPFIPFXXXXXXXXXXLAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 408
           G + P LP   +           AV+    ++  H  SP+ +   V   G  + + +  L
Sbjct: 614 GGIDPELPVTGYADLVR------AVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLISL 667

Query: 407 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSDD 249
           + AG  T PG   + L   V  WVL  G       I+++  A   GL  +S   YG  D+
Sbjct: 668 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVDN 726

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>YQM4_SCHPO (Q9UU83) Protein P1E11.04c in chromosome III|
          Length = 425

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 254 RSTHSLGCLRN*AQQTK--QLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAV 427
           RS  S+G      + +K  +  ST     +  RSPSH DS+PSTQ     R +     +V
Sbjct: 86  RSNSSMGTFDPPPRYSKIARARSTHVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSV 145

Query: 428 APGSPR 445
             GS R
Sbjct: 146 REGSHR 151

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>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 314 STEFQGPAPTRSPSHGDSAPSTQGQ*SRRPT-GGPSSAVAPGSP 442
           ST    PA    PS   SA S  G  SRR + GGPS     GSP
Sbjct: 109 STTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSP 152

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>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +2

Query: 218 QSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLA--STEFQGPAPTRSPSHGDSAPSTQGQ* 391
           Q + ++P  S   S HS+       + T Q    +T+   P PT  P    ++P   G  
Sbjct: 131 QVAAQDPAASKAPSNHSITTKPLATEATSQAPRQTTDVGTPGPTAPPVTNSTSPDLLGHA 190

Query: 392 SRRPTGGP--SSAVAPGSPRKRLGPPT 466
           + +P+ GP  S   A GS    LGP T
Sbjct: 191 TPKPSEGPQLSFPTAAGS----LGPVT 213

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>SNTB2_HUMAN (Q13425) Beta-2-syntrophin (59 kDa dystrophin-associated protein|
           A1, basic component 2) (Syntrophin 3) (SNT3)
           (Syntrophin-like) (SNTL)
          Length = 540

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 350 PSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           P+ G +A +  G     P GG +    PGSP + LGPP+ P
Sbjct: 61  PALGPAAAAFNGL----PNGGGAGDSLPGSPSRGLGPPSPP 97

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>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG)
          Length = 525

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
 Frame = +3

Query: 306 NSHQLNSKDQHPPGHQATETL---HHP----PRGSDLAGQLEAPHQL*HPVALVNDWGHQ 464
           +SH  NS D HP  H + E     HHP    P   D   Q    H   HP       GH 
Sbjct: 340 HSHNNNSSDLHPHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGH---HP------HGHH 390

Query: 465 PNRRFPVPCKRLGQHLHC 518
           P+   P      G H HC
Sbjct: 391 PHGHHPHGHHPHGHHPHC 408

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>SETB1_HUMAN (Q15047) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4|
           (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4)
           (H3-K9-HMTase 4) (SET domain bifurcated 1)
           (ERG-associated protein with SET domain) (ESET)
          Length = 1291

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 332 PAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           PAP  SP  GDS   +Q   SR+     S++  PGS       PT P
Sbjct: 463 PAPPLSPQAGDSDLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSP 509

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>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/52 (44%), Positives = 23/52 (44%)
 Frame = +2

Query: 317 TEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           T  Q PAP  S      AP  Q Q  R  TG   SA     PR  LGPPT P
Sbjct: 87  TRSQTPAPKPS-----RAPPQQPQPPRMQTGRGGSA-----PRPELGPPTNP 128

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>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog|
          Length = 319

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 293 QQTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           + +   AST    P P+ +P    ++P+   Q S  P   P+S   P +      PPT P
Sbjct: 14  ENSSDSASTSPDAPQPSENPPSPPTSPAAP-QTSENPPSPPTSPAVPQTRENPPSPPTSP 72

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>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
 Frame = +2

Query: 179 TNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSPSH 358
           T +TP    ++   +ST+ P      +T   G          Q  ST FQ P  T+ PS 
Sbjct: 61  TTSTPTTTATQPTXTSTQTPG-----TTQLPGTTSTPTTTATQPTSTSFQTPGTTQLPSS 115

Query: 359 GDSAPSTQGQ*SRRPTGGPSSAVAPG---SPRKRLGPPT 466
             +  +T  Q +   +  P +   PG   SP   +  PT
Sbjct: 116 TSTPTTTATQPTSTASQTPGTTQPPGGASSPTTTVTQPT 154

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>GAG_WMSV (P03330) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 511

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRR-----PTGGPSSAVAPGSPRKRLGPPTKP 472
           GPAP ++P   D      G  SRR        GP S V    P + +GPP +P
Sbjct: 156 GPAPGQAPDSSDPEGPAAGTRSRRARSPADDSGPDSTVI--LPLRAIGPPAEP 206

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>FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat|
           protein 16)
          Length = 479

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 326 QGPAPTRSPSHGDSAPSTQGQ*SR---RPTGGPSSAVAPGSPRKRLGPP 463
           Q P P   P    +AP ++   +     P GGP+SA+APG P +R  PP
Sbjct: 48  QPPPPPTLPPPSLAAPLSRAALAGGPCTPAGGPASALAPGHPAER--PP 94

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
 Frame = +2

Query: 332 PAPTRSP--SHGDSAPSTQGQ*--SRRPTGGPSS-----AVAPGSPRKRLGPP 463
           P+PT +P  S   + P TQGQ   SR   GGP +       A  SP+++ GPP
Sbjct: 507 PSPTAAPQQSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPP 559

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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPR 445
           GP PTRS   G +A  T     RRP G P SA  PG PR
Sbjct: 626 GPPPTRS---GAAAQRTH----RRPPGCPRSARNPGCPR 657



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPR 445
           GP PTRS   G +A  T     RRP G P SA  PG PR
Sbjct: 501 GPPPTRS---GAAAQRTH----RRPPGCPRSARNPGCPR 532



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPR 445
           GP PTRS   G +A  T     RRP G P SA  PG PR
Sbjct: 376 GPPPTRS---GAAAQRTH----RRPPGCPRSARNPGCPR 407



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPR 445
           GP PTRS   G +A  T     RRP G P SA  PG PR
Sbjct: 251 GPPPTRS---GAAAQRTH----RRPPGCPRSARNPGCPR 282

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>UL31_HCMVA (P16848) Hypothetical protein UL31 precursor|
          Length = 595

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 70  FSFYMYTTAVAGFKVSISQNPFLFY 144
           FSFY+ T+A  G+ +  S+NP LF+
Sbjct: 427 FSFYLLTSAQRGYDLRFSRNPSLFF 451

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>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 296 QTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           + +Q + ++   P P+R       AP  Q Q  R  TG   SA     PR  LGPPT P
Sbjct: 81  EERQESRSQTPAPKPSR-------APPQQPQPPRMQTGRGGSA-----PRPELGPPTNP 127

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>POLS_RUBVR (P19725) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 296 QTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           + +Q + ++   P P+R       AP  Q Q  R  TG   SA     PR  LGPPT P
Sbjct: 82  EERQESRSQTPAPKPSR-------APPQQPQPPRMQTGRGGSA-----PRPELGPPTNP 128

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>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 296 QTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           + +Q + ++   P P+R       AP  Q Q  R  TG   SA     PR  LGPPT P
Sbjct: 82  EERQESRSQTPAPKPSR-------APPQQPQPPRMQTGRGGSA-----PRPELGPPTNP 128

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>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 19/136 (13%)
 Frame = +2

Query: 101  QDSKFLSVKTHFYSI--CATSDKYKCTRTNTTPILLCSEQ----KQSSTKEPTCSHHRST 262
            + + F SVK    S    A SD+    +  T+P L  S +    ++SS   P+ S    T
Sbjct: 2241 ESTSFFSVKQRIKSFENLANSDR-PTAKCATSPFLSVSSKPPINRRSSGSIPSGSPSDMT 2299

Query: 263  HSLGCLRN*AQQTKQLASTEFQGPAPTRSPSH-------------GDSAPSTQGQ*SRRP 403
             S    R+ +  ++  +      P  T+SPS               +  PS   + S  P
Sbjct: 2300 -SRSLRRSLSSCSESQSEASSLLPQMTKSPSSMTLTVSRQNPPDTSNKGPSPDPKKSLVP 2358

Query: 404  TGGPSSAVAPGSPRKR 451
             G P+S V+P SP KR
Sbjct: 2359 VGIPTSTVSPASPSKR 2374

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>MAGB6_HUMAN (Q8N7X4) Melanoma-associated antigen B6 (MAGE-B6 antigen)|
          Length = 407

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
 Frame = +2

Query: 167 KCTRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTR 346
           K   TN  P  L   Q  +  +E   SH  S+ S  CL +  + +      E QG +PT 
Sbjct: 14  KRQETNGQPQGLTGPQATAEKQEE--SHSSSSSSRACLGDCRRSSDASIPQESQGVSPTG 71

Query: 347 SP----SHGDSAPSTQGQ*SRRPTGGPSSAV 427
           SP    S+  S  +  GQ  + P+    ++V
Sbjct: 72  SPDAVVSYSKSDVAANGQDEKSPSTSRDASV 102

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>ATPF2_HUMAN (Q8N5M1) ATP synthase mitochondrial F1 complex assembly factor 2,|
           mitochondrial precursor (ATP12 homolog)
          Length = 289

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = +2

Query: 398 RPTGGPSSAVAPG----SPRKRLGPPTK 469
           RP GGPS++++PG    SP +   PPT+
Sbjct: 18  RPAGGPSASMSPGPTIPSPARAYAPPTE 45

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>MURG_MYCPA (Q73YQ8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 408

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 513 ADAD-RDAYMALEIAGLVGGPSRLRGLPGATADEGPPVGRR 394
           ADAD     +A E+AGLVG P RL  +  A A  G P   R
Sbjct: 344 ADADLTPELVAREVAGLVGDPPRLAAMTTAAARVGHPDAAR 384

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>CYB_PARMU (Q9MLJ1) Cytochrome b|
          Length = 372

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
 Frame = -1

Query: 237 GSFVLLCFCSLHSRMGVVLVL-----VHLYLSDVAHIE*K----WVLTDRNFESCD---- 97
           GS +L C  +L +  G  L +     ++L  S V HI       W++ + +  S      
Sbjct: 26  GSMLLTCL-ALQTMTGFFLAIHYTANINLAFSSVIHITRDVPYGWIMQNIHAISASLFFI 84

Query: 96  CCSIHIK*KLYIGVMLNSRIWV 31
           C  IHI   LY G+ LN  +W+
Sbjct: 85  CIYIHIARGLYYGLYLNKEVWL 106

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>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +2

Query: 323 FQGPAPTRSPSHGDSAPSTQG-----Q*SRRPTGG-PSSAVAPGSPRKRLGPPTKP 472
           FQGP P   P H    P + G          P GG  +S+V P S  K+  PPT P
Sbjct: 205 FQGPPPGAPPPHPQLYPGSAGGGVLSGPPMGPKGGAAASSVGPPSGGKQHPPPTTP 260

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>DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-) (Virulence|
           associated DEAD box protein 1)
          Length = 616

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 305 QLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRR-PTGGPSSAVAPGSPRKRLGPPTKP 472
           Q A T+ QGPA  +SP    S P+TQ Q S + P  G +  + P + ++    P++P
Sbjct: 510 QQAPTQAQGPAQMQSP---PSEPATQPQASAQIPVQGQTPPIQPRAQQQGQQQPSQP 563

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>RDRP_NODAV (Q9IMM4) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase) (Protein A)
          Length = 1043

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +2

Query: 290  AQQTKQLASTEFQGPAPTRS-------PSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRK 448
            A QT   +S    G  P R        P+   +  +  G  +R PT GPS   A G  R 
Sbjct: 972  AHQTASRSSASRGGAGPGRGGRRRPGPPAKTTAGGARDGNQARAPTSGPSKRQAEGRSRS 1031

Query: 449  RLGP 460
              GP
Sbjct: 1032 SRGP 1035

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>HIC2_BRARE (Q90W33) Hypermethylated in cancer 2 protein|
          Length = 560

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 CTASSNRYGPSSTKNGMNGRCG 576
           CT +SN   PS++KNG NG CG
Sbjct: 184 CT-TSNSLSPSTSKNGSNGSCG 204

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>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI
           alpha-amylase)
          Length = 427

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 441 GLPGATADEGPPVGRRDHCPWVDGAESPWLGDLVGAGP 328
           G P A  D GP +  RD  P+ DG  +P  G   GA P
Sbjct: 134 GTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAP 171

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>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
 Frame = +1

Query: 283  KLSPANQATRIN*IPRTSTHQVTKPRRLCTI--HPGAVISPANWRPLISCSTR*PS*TTG 456
            +L P++QA  +  +PRT         RL T+  H   +I+    R  +S  T     T+ 
Sbjct: 2029 QLPPSSQAEGMGQVPRT--------HRLITLADHICQIITQDFARNQVSSQTPQQPPTST 2080

Query: 457  ATNQTGDFQCHVSVSVSICTASSNRYGPSSTKNGM-NGRCGCRAPP*DAKSRAKGATKPN 633
              N          VS  + T +SNRY P S    + + R G R  P +   +++G ++P 
Sbjct: 2081 FQNSPSAL-----VSTPVRTKTSNRYSPESQAQSVHHQRPGSRVSPENLVDKSRG-SRPG 2134

Query: 634  MLAIRFHI 657
                R H+
Sbjct: 2135 KSPERSHV 2142

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>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 625

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 305 QLASTEFQGPAPTRSPSHGDSAPSTQGQ-*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           Q A T+ QGPAP +SP     APSTQ Q  ++ P  G      P + ++    P +P
Sbjct: 517 QQAPTQAQGPAPVQSP---PPAPSTQPQAPAQTPIQGQIPPTQPRAQQQGQQQPGQP 570

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>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           GP P   P  G + P  +      P G P    AP   R   GPP  P
Sbjct: 614 GPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPP 661



 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPP 463
           GP P   PS G + P  +      P G P    AP   R   GPP
Sbjct: 446 GPPPPGPPSPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPP 490

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>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor|
          Length = 226

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
 Frame = +3

Query: 249 IIARPIAWVACEIEPSKPSNSHQLNS-----------KDQHPPGHQATETLHHPPRGSDL 395
           ++  P+ W    I    PS  ++                QHPP H      HH P G   
Sbjct: 48  LVLTPLKWYQSMIRQPYPSYGYESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGP-- 105

Query: 396 AGQLEAPHQL*HPV----ALVNDWGHQPN 470
           A Q   P Q   PV    ++  +  HQPN
Sbjct: 106 AQQPVVPQQPLMPVPGHHSMTPNQHHQPN 134

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>INVS_MOUSE (O89019) Inversin (Inversion of embryo turning protein)|
           (Nephrocystin-2)
          Length = 1062

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
 Frame = +2

Query: 179 TNTTPILLC--------SEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGP 334
           +++ P+L C        S+Q  + +K+P  SH               Q+     +   G 
Sbjct: 623 SSSAPVLPCPPSPQNEGSKQDATPSKQPPASH-------------TVQSPDPEHSRLPGR 669

Query: 335 APTRSPSHGDSAPSTQGQ*SRRPT-------GGPSSAVAPGS 439
            P R+ S GDS+   QG  SR+P+        GPS+ V P S
Sbjct: 670 CPGRA-SQGDSSIDLQGTASRKPSETPIEHCRGPSACVHPRS 710

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>CYB_AUSSU (Q9MLL3) Cytochrome b|
          Length = 367

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
 Frame = -1

Query: 237 GSFVLLCFCSLHSRMGVVLVL-----VHLYLSDVAHI----E*KWVLTDRNFESCD---- 97
           GS +L C   L +  G  L +     ++L  S V HI       W++ + +         
Sbjct: 26  GSMLLTCLI-LQTSTGFFLAIHYTANINLAFSSVIHILRDVPYGWIMQNTHAIGASMFFI 84

Query: 96  CCSIHIK*KLYIGVMLNSRIWV*ELLYLIV 7
           C  IHI   LY G+ LN ++W+     LI+
Sbjct: 85  CIYIHIARGLYYGLYLNKKVWLSGTALLII 114

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 293 QQTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRP-TGGPSSAVAPGSPRKRLGPPT 466
           Q T+Q   T   G AP ++     S    QG   + P   GP+   +   P  R GPPT
Sbjct: 290 QATRQ---TSVSGQAPPKASGAPPSGQQRQGPPQKPPGPAGPTRQASQAGPMPRTGPPT 345

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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 468 LVGGPSRLRGLPGATADEGPPVG 400
           ++G P  LRG PG+ + +GPP G
Sbjct: 845 MLGPPQELRGPPGSQSQQGPPQG 867

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>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 19/84 (22%), Positives = 34/84 (40%)
 Frame = +2

Query: 170 CTRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRS 349
           CT T TT    C+   Q ST +P C+  + T            T +  +T+     PT +
Sbjct: 44  CTTTTTTTTTTCAPPTQQSTTQPPCTTSKPT------------TPKQTTTQLPCTTPTTT 91

Query: 350 PSHGDSAPSTQGQ*SRRPTGGPSS 421
            +      +T+   ++  T  P++
Sbjct: 92  KATTTKPTTTKATTTKATTTKPTT 115

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>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 466  QTGDFQCHVSVSVSICTASSNRYGPSSTKNGMNGRCGCRAPP*DAKSRAKGATK 627
            + GD     S  V+  + S  R  P S +    G   C+ PP +  SR + A K
Sbjct: 972  EAGDLPGPTSAPVTSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKASRIRAAEK 1025

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>CYB_NAJNI (Q9MLK1) Cytochrome b|
          Length = 372

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
 Frame = -1

Query: 237 GSFVLLCFCSLHSRMGVVLVL-----VHLYLSDVAHIE*K----WVLTDRNFESCD---- 97
           GS +L C   L +  G  L L     ++L  S V HI       W++ + +  S      
Sbjct: 26  GSMLLTCLM-LQTITGFFLALHYTANINLAFSSVIHITRDVPYGWIMQNLHAISASLFFV 84

Query: 96  CCSIHIK*KLYIGVMLNSRIWV 31
           C  IHI   LY G+ LN  +W+
Sbjct: 85  CIYIHIARGLYYGLYLNKEVWL 106

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>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
 Frame = +2

Query: 329 GPAPTRSPSHGDSAPSTQGQ*S------RRPTGGPSSAVAPGSPRKRLGPP 463
           GP     P  G  AP   G          R T GP  A+ P  P   +GPP
Sbjct: 94  GPKGEPGPEGGVGAPGMPGSPGPAGLKGERGTPGPGGAIGPQGPSGAMGPP 144

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>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
 Frame = +1

Query: 358  RRLCTIHPGAVISPANWRPLISCSTR*PS*TTGATNQ-----TGDFQCH-VSVSVSICTA 519
            RR     PG  ISP N    + CS      TTGA N      TG   C   S++   C  
Sbjct: 929  RRCNQCQPGFYISPGNATGCLPCSCH----TTGAVNHICNSLTGQCVCQDASIAGQRCDQ 984

Query: 520  SSNRYGPSSTKNGMNGRCGC 579
              + Y     + G    C C
Sbjct: 985  CKDHYFGFDPQTGRCQPCNC 1004

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 335 APTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           A  R  +   S+ S+    S    G     V PG+P  R GPP  P
Sbjct: 383 AAARRSASSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPPPSP 428

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>GSK3H_DROME (P83101) Putative glycogen synthase kinase-3 homolog (EC 2.7.11.26)|
           (GSK-3) (Protein gasket)
          Length = 501

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 155 SDKYKCTRTNTTPILLCSEQKQSSTKEPTCSH-HRSTHSLGCLRN*AQQTKQLASTEFQG 331
           +D  K    +T P+LL   Q  S+TKEP+ +H +R+T      R      K   +   + 
Sbjct: 341 TDYEKTIEPDTMPLLLPRAQGSSTTKEPSAAHRNRNTAGEESPRKTEDSQKPATAALSKS 400

Query: 332 PAPT 343
           P P+
Sbjct: 401 PGPS 404

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 347 SPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 472
           S S   S+ S+    S    G     V PG+P  R GPP  P
Sbjct: 379 SSSSSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPPPSP 420

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>Y4628_STRCO (Q04296) Putative HTH-type transcriptional regulator SCO4628|
          Length = 269

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -1

Query: 495 AYMALEIAGLVGGPSRLRGLPGATADEGP----PVGRRDHCPWVDGAESPWLGDLVGAG 331
           AY ALE  GLV   +  RG       + P     +GR D   W DG E  ++ D V +G
Sbjct: 50  AYKALETEGLV---AMSRGHGTVVRRKAPLKRLGIGRYDKAKWRDGDEVAFIADRVASG 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,223,964
Number of Sequences: 219361
Number of extensions: 2636961
Number of successful extensions: 9895
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 8178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9837
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result