ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473308.1| Oryza sativa (japonica cultivar-group), predic... 246 8e-62
2emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4,... 246 8e-62
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 246 8e-62
4dbj|AK105805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 246 8e-62
5gb|AC012100.7| Homo sapiens chromosome 15 clone RP11-507J18 map ... 56 2e-04
6gb|AC084756.3|AC084756 Homo sapiens chromosome 15 clone RP11-120... 56 2e-04
7gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, com... 46 0.15
8gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complet... 42 2.4
9emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chrom... 42 2.4
10emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in... 42 2.4
11emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-1... 42 2.4
12emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chr... 42 2.4
13gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's ... 40 9.4
14gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 9.4
15gb|BC075572.1| Xenopus tropicalis cDNA clone IMAGE:6993311, part... 40 9.4
16emb|CT025566.7| Mouse DNA sequence from clone RP24-151A22 on chr... 40 9.4
17gb|AC007313.4| Homo sapiens PAC clone RP5-1084H12 from 7, comple... 40 9.4
18emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on ch... 40 9.4
19emb|AL117339.10|HSA508N22 Human DNA sequence from clone RP11-508... 40 9.4
20emb|AL031121.5|HS495O10 Human DNA sequence from clone RP3-495O10... 40 9.4
21emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome... 40 9.4
22emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 9.4
23gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 9.4
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
26dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
27dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
28gb|AC155835.3| Mus musculus 6 BAC RP24-532I24 (Roswell Park Canc... 40 9.4
29gb|AC000060.1|HSAC000060 Human BAC clone RG156N09 from 7q21-7q22... 40 9.4
30emb|CR942397.2| Xenopus tropicalis finished cDNA, clone TGas099h21 40 9.4
31gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 9.4
32gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
33gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 9.4
34emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F... 40 9.4
35gb|AC015535.11| Mus musculus chromosome 5, clone RP23-39M18, com... 40 9.4
36emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 9.4
37gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 40 9.4
38gb|AC162441.11| Mus musculus chromosome 1, clone RP23-2E23, comp... 40 9.4

>ref|XM_473308.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score =  246 bits (124), Expect = 8e-62
 Identities = 334/404 (82%)
 Strand = Plus / Minus

                                                                       
Query: 275 tgcttgcgaaattgagcccagcaaaccaagcaactcgcatcaactgaattccaaggacca 334
           ||||||| || ||||| |||||||||||||| || |||||||  || || || || ||||
Sbjct: 961 tgcttgcaaatttgagtccagcaaaccaagccacgcgcatcagttggatgcctagaacca 902

                                                                       
Query: 335 gcacccaccaggtcaccaagccacggagactctgcaccatccacccaggggcagtgatct 394
           | |||||||| | |||||| ||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 901 gaacccaccatgacaccaaaccacgaagactttgcaccatccatccaggcgcagtgatct 842

                                                                       
Query: 395 cgccggccaactggaggcccctcatcagctgtagcacccggtagccctcgtaaacgactg 454
           |  |||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 841 catcggctaactgaagacccctcatcagctgtagaactcggtaaccctcataaaccacag 782

                                                                       
Query: 455 gggccaccaaccaaaccggcgatttccagtgccatgtaagcgtctcggtcagcatctgca 514
           |||||||||||||||| ||||||||||||||||| |||||| |||| ||||  |  || |
Sbjct: 781 gggccaccaaccaaactggcgatttccagtgccaagtaagcatctcagtcaaaacttgta 722

                                                                       
Query: 515 ctgcaagtagtaatagatatggcccaagcagcaccaagaacgggatgaatggtagatgcg 574
           | | ||| || || |||||||| |||||||||||    ||||| |||||||||| ||| |
Sbjct: 721 cagaaaggagcaagagatatggtccaagcagcactgcaaacggaatgaatggtatatgtg 662

                                                                       
Query: 575 gctgcagagctcccccgtgagacgcgaaaagcagggccaaaggagcaacgaagcccaata 634
           |||||||||  |||   ||||| ||||||| ||||||||||||| |||  ||||| | ||
Sbjct: 661 gctgcagagtacccttatgagatgcgaaaaacagggccaaaggaacaagaaagcctacta 602

                                                       
Query: 635 tgctggcaattagattccacattctgtaagaagttgggatctgc 678
           ||||||||   |||||||| |  |||||||||||||||||||||
Sbjct: 601 tgctggcagccagattccagaacctgtaagaagttgggatctgc 558



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>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11,
             complete sequence
          Length = 113677

 Score =  246 bits (124), Expect = 8e-62
 Identities = 334/404 (82%)
 Strand = Plus / Minus

                                                                         
Query: 275   tgcttgcgaaattgagcccagcaaaccaagcaactcgcatcaactgaattccaaggacca 334
             ||||||| || ||||| |||||||||||||| || |||||||  || || || || ||||
Sbjct: 93043 tgcttgcaaatttgagtccagcaaaccaagccacgcgcatcagttggatgcctagaacca 92984

                                                                         
Query: 335   gcacccaccaggtcaccaagccacggagactctgcaccatccacccaggggcagtgatct 394
             | |||||||| | |||||| ||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 92983 gaacccaccatgacaccaaaccacgaagactttgcaccatccatccaggcgcagtgatct 92924

                                                                         
Query: 395   cgccggccaactggaggcccctcatcagctgtagcacccggtagccctcgtaaacgactg 454
             |  |||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 92923 catcggctaactgaagacccctcatcagctgtagaactcggtaaccctcataaaccacag 92864

                                                                         
Query: 455   gggccaccaaccaaaccggcgatttccagtgccatgtaagcgtctcggtcagcatctgca 514
             |||||||||||||||| ||||||||||||||||| |||||| |||| ||||  |  || |
Sbjct: 92863 gggccaccaaccaaactggcgatttccagtgccaagtaagcatctcagtcaaaacttgta 92804

                                                                         
Query: 515   ctgcaagtagtaatagatatggcccaagcagcaccaagaacgggatgaatggtagatgcg 574
             | | ||| || || |||||||| |||||||||||    ||||| |||||||||| ||| |
Sbjct: 92803 cagaaaggagcaagagatatggtccaagcagcactgcaaacggaatgaatggtatatgtg 92744

                                                                         
Query: 575   gctgcagagctcccccgtgagacgcgaaaagcagggccaaaggagcaacgaagcccaata 634
             |||||||||  |||   ||||| ||||||| ||||||||||||| |||  ||||| | ||
Sbjct: 92743 gctgcagagtacccttatgagatgcgaaaaacagggccaaaggaacaagaaagcctacta 92684

                                                         
Query: 635   tgctggcaattagattccacattctgtaagaagttgggatctgc 678
             ||||||||   |||||||| |  |||||||||||||||||||||
Sbjct: 92683 tgctggcagccagattccagaacctgtaagaagttgggatctgc 92640



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  246 bits (124), Expect = 8e-62
 Identities = 334/404 (82%)
 Strand = Plus / Plus

                                                                            
Query: 275      tgcttgcgaaattgagcccagcaaaccaagcaactcgcatcaactgaattccaaggacca 334
                ||||||| || ||||| |||||||||||||| || |||||||  || || || || ||||
Sbjct: 26690152 tgcttgcaaatttgagtccagcaaaccaagccacgcgcatcagttggatgcctagaacca 26690211

                                                                            
Query: 335      gcacccaccaggtcaccaagccacggagactctgcaccatccacccaggggcagtgatct 394
                | |||||||| | |||||| ||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 26690212 gaacccaccatgacaccaaaccacgaagactttgcaccatccatccaggcgcagtgatct 26690271

                                                                            
Query: 395      cgccggccaactggaggcccctcatcagctgtagcacccggtagccctcgtaaacgactg 454
                |  |||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 26690272 catcggctaactgaagacccctcatcagctgtagaactcggtaaccctcataaaccacag 26690331

                                                                            
Query: 455      gggccaccaaccaaaccggcgatttccagtgccatgtaagcgtctcggtcagcatctgca 514
                |||||||||||||||| ||||||||||||||||| |||||| |||| ||||  |  || |
Sbjct: 26690332 gggccaccaaccaaactggcgatttccagtgccaagtaagcatctcagtcaaaacttgta 26690391

                                                                            
Query: 515      ctgcaagtagtaatagatatggcccaagcagcaccaagaacgggatgaatggtagatgcg 574
                | | ||| || || |||||||| |||||||||||    ||||| |||||||||| ||| |
Sbjct: 26690392 cagaaaggagcaagagatatggtccaagcagcactgcaaacggaatgaatggtatatgtg 26690451

                                                                            
Query: 575      gctgcagagctcccccgtgagacgcgaaaagcagggccaaaggagcaacgaagcccaata 634
                |||||||||  |||   ||||| ||||||| ||||||||||||| |||  ||||| | ||
Sbjct: 26690452 gctgcagagtacccttatgagatgcgaaaaacagggccaaaggaacaagaaagcctacta 26690511

                                                            
Query: 635      tgctggcaattagattccacattctgtaagaagttgggatctgc 678
                ||||||||   |||||||| |  |||||||||||||||||||||
Sbjct: 26690512 tgctggcagccagattccagaacctgtaagaagttgggatctgc 26690555



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>dbj|AK105805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B06, full
            insert sequence
          Length = 1350

 Score =  246 bits (124), Expect = 8e-62
 Identities = 334/404 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  tgcttgcgaaattgagcccagcaaaccaagcaactcgcatcaactgaattccaaggacca 334
            ||||||| || ||||| |||||||||||||| || |||||||  || || || || ||||
Sbjct: 1073 tgcttgcaaatttgagtccagcaaaccaagccacgcgcatcagttggatgcctagaacca 1014

                                                                        
Query: 335  gcacccaccaggtcaccaagccacggagactctgcaccatccacccaggggcagtgatct 394
            | |||||||| | |||||| ||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 1013 gaacccaccatgacaccaaaccacgaagactttgcaccatccatccaggcgcagtgatct 954

                                                                        
Query: 395  cgccggccaactggaggcccctcatcagctgtagcacccggtagccctcgtaaacgactg 454
            |  |||| ||||| || ||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 953  catcggctaactgaagacccctcatcagctgtagaactcggtaaccctcataaaccacag 894

                                                                        
Query: 455  gggccaccaaccaaaccggcgatttccagtgccatgtaagcgtctcggtcagcatctgca 514
            |||||||||||||||| ||||||||||||||||| |||||| |||| ||||  |  || |
Sbjct: 893  gggccaccaaccaaactggcgatttccagtgccaagtaagcatctcagtcaaaacttgta 834

                                                                        
Query: 515  ctgcaagtagtaatagatatggcccaagcagcaccaagaacgggatgaatggtagatgcg 574
            | | ||| || || |||||||| |||||||||||    ||||| |||||||||| ||| |
Sbjct: 833  cagaaaggagcaagagatatggtccaagcagcactgcaaacggaatgaatggtatatgtg 774

                                                                        
Query: 575  gctgcagagctcccccgtgagacgcgaaaagcagggccaaaggagcaacgaagcccaata 634
            |||||||||  |||   ||||| ||||||| ||||||||||||| |||  ||||| | ||
Sbjct: 773  gctgcagagtacccttatgagatgcgaaaaacagggccaaaggaacaagaaagcctacta 714

                                                        
Query: 635  tgctggcaattagattccacattctgtaagaagttgggatctgc 678
            ||||||||   |||||||| |  |||||||||||||||||||||
Sbjct: 713  tgctggcagccagattccagaacctgtaagaagttgggatctgc 670



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>gb|AC012100.7| Homo sapiens chromosome 15 clone RP11-507J18 map 15q21.1, complete
            sequence
          Length = 195068

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 63   tgtacaattttcattttatatgtatactacag 94
            |||||||||||||||||||| |||||||||||
Sbjct: 3039 tgtacaattttcattttatacgtatactacag 3008



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>gb|AC084756.3|AC084756 Homo sapiens chromosome 15 clone RP11-120K9 map 15q21.2, complete
              sequence
          Length = 166138

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 63     tgtacaattttcattttatatgtatactacag 94
              |||||||||||||||||||| |||||||||||
Sbjct: 135802 tgtacaattttcattttatacgtatactacag 135771



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>gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, complete sequence
          Length = 191640

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 193   cattctactgtgcagtgagcaga 215
             |||||||||||||||||||||||
Sbjct: 97571 cattctactgtgcagtgagcaga 97593



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>gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complete sequence
          Length = 180961

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 401   ccaactggaggcccctcatcagctg 425
             ||||||||| |||||||||||||||
Sbjct: 57742 ccaactggaagcccctcatcagctg 57718



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>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 109088

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    aattttcattttatatgtata 88
             |||||||||||||||||||||
Sbjct: 46624 aattttcattttatatgtata 46604



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>emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in linkage group 5,
             complete sequence
          Length = 167740

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   acaaatacaaatgcaccagaa 179
             |||||||||||||||||||||
Sbjct: 81010 acaaatacaaatgcaccagaa 81030



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>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176202

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     aattttcattttatatgtata 88
              |||||||||||||||||||||
Sbjct: 133043 aattttcattttatatgtata 133023



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>emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chromosome X, complete
              sequence
          Length = 203422

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     tttcattttatatgtatacta 91
              |||||||||||||||||||||
Sbjct: 193688 tttcattttatatgtatacta 193668



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>gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 227592

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     attttcattttatatgtata 88
              ||||||||||||||||||||
Sbjct: 125631 attttcattttatatgtata 125612



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 427     agcacccggtagccctcgta 446
               ||||||||||||||||||||
Sbjct: 1737222 agcacccggtagccctcgta 1737203



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>gb|BC075572.1| Xenopus tropicalis cDNA clone IMAGE:6993311, partial cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 ggagactctgcaccatccac 378
           ||||||||||||||||||||
Sbjct: 103 ggagactctgcaccatccac 122



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>emb|CT025566.7| Mouse DNA sequence from clone RP24-151A22 on chromosome 13, complete
            sequence
          Length = 149381

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   attttcattttatatgtata 88
            ||||||||||||||||||||
Sbjct: 1463 attttcattttatatgtata 1444



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>gb|AC007313.4| Homo sapiens PAC clone RP5-1084H12 from 7, complete sequence
          Length = 119146

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tttcattttatatgtatact 90
              ||||||||||||||||||||
Sbjct: 111155 tttcattttatatgtatact 111174



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>emb|AL391099.12| Human DNA sequence from clone RP11-178A10 on chromosome 10 Contains a
             novel gene (FLJ34785 FLJ33470), a novel gene and a CpG
             island, complete sequence
          Length = 123083

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   gaagcccaatatgctggcaa 643
             ||||||||||||||||||||
Sbjct: 14253 gaagcccaatatgctggcaa 14234



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>emb|AL117339.10|HSA508N22 Human DNA sequence from clone RP11-508N22 on chromosome 10 Contains the
              ZNF37A gene for zinc finger protein 37a (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, a FXYD domain
              containing ion transport regulator 6 (FXYD6) pseudogene,  a
              par-3 partitioning defective 3 homolog (C.elegans) (PARD3)
              pseudogene, two novel genes, the 5' end of a novel gene for
              a protein similar to hypthetical protein FLJ40773
              (containing FLJ3472), a pseudogene similar to part of
              excision repair cross-complementing rodent repair
              deficiency, complementation group 3 (xeroderma pigmentosum
              group B complementing) (ERCC3) and a CpG island, complete
              sequence
          Length = 208642

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 624    gaagcccaatatgctggcaa 643
              ||||||||||||||||||||
Sbjct: 160447 gaagcccaatatgctggcaa 160466



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>emb|AL031121.5|HS495O10 Human DNA sequence from clone RP3-495O10 on chromosome 6q26-27 Contains
             an RPL37A (60S Ribosomal Protein L37A) pseudogene and the
             3' end of the gene for a novel protein (FLJ32724),
             complete sequence
          Length = 187908

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   aggaccagcacccaccaggt 347
             ||||||||||||||||||||
Sbjct: 26647 aggaccagcacccaccaggt 26666



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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  agcacccggtagccctcgta 446
            ||||||||||||||||||||
Sbjct: 5812 agcacccggtagccctcgta 5793



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>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14
          Length = 300050

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    agcacccggtagccctcgta 446
              ||||||||||||||||||||
Sbjct: 107082 agcacccggtagccctcgta 107063



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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 68      aattttcattttatatgtat 87
               ||||||||||||||||||||
Sbjct: 1066536 aattttcattttatatgtat 1066517



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       caattttcattttatatgta 86
                ||||||||||||||||||||
Sbjct: 16148394 caattttcattttatatgta 16148413



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       caattttcattttatatgta 86
                ||||||||||||||||||||
Sbjct: 42387821 caattttcattttatatgta 42387840



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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     caattttcattttatatgta 86
              ||||||||||||||||||||
Sbjct: 159778 caattttcattttatatgta 159797



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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    caattttcattttatatgta 86
             ||||||||||||||||||||
Sbjct: 47159 caattttcattttatatgta 47178



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>gb|AC155835.3| Mus musculus 6 BAC RP24-532I24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 157114

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aaagtagttcttacacccat 37
             ||||||||||||||||||||
Sbjct: 96426 aaagtagttcttacacccat 96445



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>gb|AC000060.1|HSAC000060 Human BAC clone RG156N09 from 7q21-7q22, complete sequence
          Length = 34264

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   tttcattttatatgtatact 90
            ||||||||||||||||||||
Sbjct: 1405 tttcattttatatgtatact 1386



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>emb|CR942397.2| Xenopus tropicalis finished cDNA, clone TGas099h21
          Length = 954

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 ggagactctgcaccatccac 378
           ||||||||||||||||||||
Sbjct: 59  ggagactctgcaccatccac 78



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 427     agcacccggtagccctcgta 446
               ||||||||||||||||||||
Sbjct: 1324969 agcacccggtagccctcgta 1324950



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       caattttcattttatatgta 86
                ||||||||||||||||||||
Sbjct: 16101627 caattttcattttatatgta 16101646



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     gaaattgagcccagcaaacc 301
               ||||||||||||||||||||
Sbjct: 1616193 gaaattgagcccagcaaacc 1616174



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>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    caattttcattttatatgta 86
             ||||||||||||||||||||
Sbjct: 94949 caattttcattttatatgta 94930



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>gb|AC015535.11| Mus musculus chromosome 5, clone RP23-39M18, complete sequence
          Length = 263382

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     attttcattttatatgtata 88
              ||||||||||||||||||||
Sbjct: 198842 attttcattttatatgtata 198861



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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    cagcacccaccaggtcacca 352
              ||||||||||||||||||||
Sbjct: 110300 cagcacccaccaggtcacca 110281



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>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete
            sequence
          Length = 173581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   attttcattttatatgtata 88
            ||||||||||||||||||||
Sbjct: 8761 attttcattttatatgtata 8780



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>gb|AC162441.11| Mus musculus chromosome 1, clone RP23-2E23, complete sequence
          Length = 225487

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ttacacccatattcgactgt 47
              ||||||||||||||||||||
Sbjct: 108176 ttacacccatattcgactgt 108195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,866,649
Number of Sequences: 3902068
Number of extensions: 5866649
Number of successful extensions: 112479
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112157
Number of HSP's gapped (non-prelim): 318
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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