Clone Name | rbasd2a18 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469455.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2735 Score = 325 bits (164), Expect = 1e-85 Identities = 251/276 (90%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 345 cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 403 |||||||||||||||||||||||||||| || |||||||||||||||| | |||||| | Sbjct: 2467 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 2408 Query: 404 gaagttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagt 463 ||| ||||||||| || || || |||||||||||||||| |||||||||||||||||||| Sbjct: 2407 gaacttgtccgaagatatctggacagccttcccagctgcccttttctctggattcccagt 2348 Query: 464 aaccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggttt 523 ||||||| |||||||||||||||||| || ||||||| || |||||||||| ||||||| Sbjct: 2347 aaccacca-aggtagcggtatgtgtcggtagctttatcttttgcaaaccacc-gaggttt 2290 Query: 524 ccacccactctcctgcatctttcgtgcctgccgttgtctttgctcaagcctcaacttctc 583 |||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 2289 ccacccgctctcctgcatcttccgtgcctgtcgttgtctctgttcaagcctcaacttctc 2230 Query: 584 agcatttgctctttcatattcaccattctctaggca 619 |||||||||||||||||| ||||||||||||||||| Sbjct: 2229 agcatttgctctttcatactcaccattctctaggca 2194 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Minus Query: 288 tttaattgctctagtataaaccactaaaaa 317 ||||||||||||| |||||||| ||||||| Sbjct: 2533 tttaattgctctaatataaaccgctaaaaa 2504
>dbj|AK065804.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037L05, full insert sequence Length = 2353 Score = 325 bits (164), Expect = 1e-85 Identities = 251/276 (90%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 345 cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 403 |||||||||||||||||||||||||||| || |||||||||||||||| | |||||| | Sbjct: 2085 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 2026 Query: 404 gaagttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagt 463 ||| ||||||||| || || || |||||||||||||||| |||||||||||||||||||| Sbjct: 2025 gaacttgtccgaagatatctggacagccttcccagctgcccttttctctggattcccagt 1966 Query: 464 aaccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggttt 523 ||||||| |||||||||||||||||| || ||||||| || |||||||||| ||||||| Sbjct: 1965 aaccacca-aggtagcggtatgtgtcggtagctttatcttttgcaaaccacc-gaggttt 1908 Query: 524 ccacccactctcctgcatctttcgtgcctgccgttgtctttgctcaagcctcaacttctc 583 |||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 1907 ccacccgctctcctgcatcttccgtgcctgtcgttgtctctgttcaagcctcaacttctc 1848 Query: 584 agcatttgctctttcatattcaccattctctaggca 619 |||||||||||||||||| ||||||||||||||||| Sbjct: 1847 agcatttgctctttcatactcaccattctctaggca 1812
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence Length = 139074 Score = 228 bits (115), Expect = 2e-56 Identities = 190/211 (90%), Gaps = 3/211 (1%) Strand = Plus / Plus Query: 345 cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 403 |||||||||||||||||||||||||||| || |||||||||||||||| | |||||| | Sbjct: 109136 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 109195 Query: 404 gaagttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagt 463 ||| ||||||||| || || || |||||||||||||||| |||||||||||||||||||| Sbjct: 109196 gaacttgtccgaagatatctggacagccttcccagctgcccttttctctggattcccagt 109255 Query: 464 aaccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggttt 523 ||||| || |||||||||||||||||| || ||||||| || |||||||| ||||||||| Sbjct: 109256 aacca-ccaaggtagcggtatgtgtcggtagctttatcttttgcaaacca-ccgaggttt 109313 Query: 524 ccacccactctcctgcatctttcgtgcctgc 554 |||||| |||||||||||||| ||||||||| Sbjct: 109314 ccacccgctctcctgcatcttccgtgcctgc 109344 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 550 cctgccgttgtctttgctcaagcctcaacttctcagcatttgctctttcatattcaccat 609 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 109871 cctgtcgttgtctctgttcaagcctcaacttctcagcatttgctctttcatactcaccat 109930 Query: 610 tctctaggca 619 |||||||||| Sbjct: 109931 tctctaggca 109940 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Plus Query: 288 tttaattgctctagtataaaccactaaaaa 317 ||||||||||||| |||||||| ||||||| Sbjct: 109070 tttaattgctctaatataaaccgctaaaaa 109099
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 228 bits (115), Expect = 2e-56 Identities = 190/211 (90%), Gaps = 3/211 (1%) Strand = Plus / Minus Query: 345 cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 403 |||||||||||||||||||||||||||| || |||||||||||||||| | |||||| | Sbjct: 28043971 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 28043912 Query: 404 gaagttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagt 463 ||| ||||||||| || || || |||||||||||||||| |||||||||||||||||||| Sbjct: 28043911 gaacttgtccgaagatatctggacagccttcccagctgcccttttctctggattcccagt 28043852 Query: 464 aaccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggttt 523 ||||| || |||||||||||||||||| || ||||||| || |||||||| ||||||||| Sbjct: 28043851 aacca-ccaaggtagcggtatgtgtcggtagctttatcttttgcaaacca-ccgaggttt 28043794 Query: 524 ccacccactctcctgcatctttcgtgcctgc 554 |||||| |||||||||||||| ||||||||| Sbjct: 28043793 ccacccgctctcctgcatcttccgtgcctgc 28043763 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 550 cctgccgttgtctttgctcaagcctcaacttctcagcatttgctctttcatattcaccat 609 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 28043236 cctgtcgttgtctctgttcaagcctcaacttctcagcatttgctctttcatactcaccat 28043177 Query: 610 tctctaggca 619 |||||||||| Sbjct: 28043176 tctctaggca 28043167 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Minus Query: 288 tttaattgctctagtataaaccactaaaaa 317 ||||||||||||| |||||||| ||||||| Sbjct: 28044037 tttaattgctctaatataaaccgctaaaaa 28044008 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 20494425 atgtacggaaaaacaatgta 20494444
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 228 bits (115), Expect = 2e-56 Identities = 190/211 (90%), Gaps = 3/211 (1%) Strand = Plus / Minus Query: 345 cagagaaccagaagacctgtaacctacttgaa-cctagtcagttatcattagatcgtttg 403 |||||||||||||||||||||||||||| || |||||||||||||||| | |||||| | Sbjct: 28135295 cagagaaccagaagacctgtaacctactcaaagcctagtcagttatcatcaaatcgttag 28135236 Query: 404 gaagttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagt 463 ||| ||||||||| || || || |||||||||||||||| |||||||||||||||||||| Sbjct: 28135235 gaacttgtccgaagatatctggacagccttcccagctgcccttttctctggattcccagt 28135176 Query: 464 aaccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggttt 523 ||||| || |||||||||||||||||| || ||||||| || |||||||| ||||||||| Sbjct: 28135175 aacca-ccaaggtagcggtatgtgtcggtagctttatcttttgcaaacca-ccgaggttt 28135118 Query: 524 ccacccactctcctgcatctttcgtgcctgc 554 |||||| |||||||||||||| ||||||||| Sbjct: 28135117 ccacccgctctcctgcatcttccgtgcctgc 28135087 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 550 cctgccgttgtctttgctcaagcctcaacttctcagcatttgctctttcatattcaccat 609 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 28134560 cctgtcgttgtctctgttcaagcctcaacttctcagcatttgctctttcatactcaccat 28134501 Query: 610 tctctaggca 619 |||||||||| Sbjct: 28134500 tctctaggca 28134491 Score = 44.1 bits (22), Expect = 0.56 Identities = 28/30 (93%) Strand = Plus / Minus Query: 288 tttaattgctctagtataaaccactaaaaa 317 ||||||||||||| |||||||| ||||||| Sbjct: 28135361 tttaattgctctaatataaaccgctaaaaa 28135332 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 20487454 atgtacggaaaaacaatgta 20487473
>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 200 bits (101), Expect = 4e-48 Identities = 184/209 (88%), Gaps = 2/209 (0%) Strand = Plus / Minus Query: 346 agagaaccagaagacctgtaacctacttgaacctagtcagttatcattagatcgtttgga 405 ||||||||| ||||||| ||||||||| ||||||||||| |||||| |||||||| || Sbjct: 63865 agagaaccaaaagacctataacctactcaaacctagtcagctatcatcagatcgttaggg 63806 Query: 406 agttgtccgaaaatgtcagggcagccttcccagctgctcttttctctggattcccagtaa 465 ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 63805 tcttgcccgaagatgtcggggcagccttcccagctgctcttttctctggattcccagtac 63746 Query: 466 ccacccgaggtagcggtatgtgtcgctacctttatccttcgcaaaccacccgaggtttcc 525 ||| |||||||| ||||||||||| || |||||||||| |||||||| |||||| |||| Sbjct: 63745 cca-ccgaggtaacggtatgtgtcagtagctttatcctttgcaaacca-ccgaggcttcc 63688 Query: 526 acccactctcctgcatctttcgtgcctgc 554 | || || ||||||||||||||||||||| Sbjct: 63687 atccgctatcctgcatctttcgtgcctgc 63659 Score = 83.8 bits (42), Expect = 7e-13 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 550 cctgccgttgtctttgctcaagcctcaacttctcagcatttgctctttcatattcaccat 609 ||||||| ||| | || |||||||||||||||||||||||||| |||||||||||||| | Sbjct: 60938 cctgccgctgtttctgttcaagcctcaacttctcagcatttgccctttcatattcacctt 60879 Query: 610 tctctaggcaccttctggtccggtcgcaatcttg 643 |||| || || | ||||||| ||||| ||||||| Sbjct: 60878 tctccagacatc-tctggtctggtcgtaatcttg 60846
>gb|AC009660.15| Homo sapiens chromosome 15, clone RP11-424J10, complete sequence Length = 214166 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 559 gtctttgctcaagcctcaacttctcag 585 |||||||||||||||||| |||||||| Sbjct: 19058 gtctttgctcaagcctcaccttctcag 19032
>gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome 14, complete sequence Length = 223142 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 attccaaaagaagaacagagaa 351 |||||||||||||||||||||| Sbjct: 67515 attccaaaagaagaacagagaa 67536
>gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosome 14, complete sequence Length = 186860 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 attccaaaagaagaacagagaa 351 |||||||||||||||||||||| Sbjct: 160217 attccaaaagaagaacagagaa 160238
>gb|AC158165.1| Mus musculus BAC clone RP23-462M21 from chromosome 6, complete sequence Length = 179032 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 attccaaaagaagaacagagaa 351 |||||||||||||||||||||| Sbjct: 121756 attccaaaagaagaacagagaa 121735
>gb|AC101931.8| Mus musculus chromosome 1, clone RP24-63O23, complete sequence Length = 209705 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 attccaaaagaagaacagagaa 351 |||||||||||||||||||||| Sbjct: 63050 attccaaaagaagaacagagaa 63071
>ref|NM_128656.2| Arabidopsis thaliana oxysterol binding AT2G31020 mRNA, complete cds Length = 2422 Score = 42.1 bits (21), Expect = 2.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 519 ggtttccacccactctcctgcatctttcgtgcctgccgttgtctttgctcaagcctcaac 578 |||||||| || ||||| ||||||| || ||||| | ||||||||| || | ||||||| Sbjct: 2153 ggtttccaacctctctcttgcatctctctcgcctgtctttgtctttgttccaacctcaac 2094 Query: 579 ttctc 583 ||||| Sbjct: 2093 ttctc 2089
>gb|AC121298.10| Mus musculus chromosome 5, clone RP23-377E6, complete sequence Length = 194045 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 13248 caagcctcaacttctcagcat 13268
>gb|AC151759.1| Ornithorhynchus anatinus chromosome UNK clone OABb-454P24, complete sequence Length = 147999 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 ctgccgttgtctttgctcaag 571 ||||||||||||||||||||| Sbjct: 147854 ctgccgttgtctttgctcaag 147874
>gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosome 17, complete sequence Length = 184085 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 586 catttgctctttcatattcaccattctct 614 |||||||||||||| | |||||||||||| Sbjct: 83423 catttgctctttcaaactcaccattctct 83395
>gb|AC160993.5| Mus musculus BAC clone RP23-159D11 from chromosome 16, complete sequence Length = 187536 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 tggaaccaacagattccaaaagaag 342 ||||||||||||| ||||||||||| Sbjct: 149638 tggaaccaacagagtccaaaagaag 149614
>gb|AC151667.1| Pan troglodytes chromosome X clone RP43-007H19 map human ortholog q28, complete sequence Length = 200796 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 ctcttttctctggattcccag 462 ||||||||||||||||||||| Sbjct: 50742 ctcttttctctggattcccag 50762
>gb|AC120413.20| Mus musculus chromosome 5, clone RP24-458L16, complete sequence Length = 163011 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 76307 caagcctcaacttctcagcat 76287
>gb|AC145689.4| Pan troglodytes BAC clone CH251-184I22 from X, complete sequence Length = 181915 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 ctcttttctctggattcccag 462 ||||||||||||||||||||| Sbjct: 165530 ctcttttctctggattcccag 165550
>emb|CR388131.10| Zebrafish DNA sequence from clone DKEY-114G9 in linkage group 1, complete sequence Length = 169443 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 cagctgctcttttctctggat 456 ||||||||||||||||||||| Sbjct: 161206 cagctgctcttttctctggat 161186
>gb|AC125313.2| Mus musculus BAC clone RP24-353A16 from 5, complete sequence Length = 152433 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 146622 caagcctcaacttctcagcat 146602
>gb|AC125343.2| Mus musculus BAC clone RP24-537A5 from 5, complete sequence Length = 131476 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 90426 caagcctcaacttctcagcat 90446
>gb|AC155955.2| Xenopus tropicalis clone CH216-151P9, complete sequence Length = 166977 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 atattcagatatacacaaatg 135 ||||||||||||||||||||| Sbjct: 39889 atattcagatatacacaaatg 39909
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence Length = 113210 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 583 cagcatttgctctttcatatt 603 ||||||||||||||||||||| Sbjct: 46146 cagcatttgctctttcatatt 46126
>gb|AC087871.9| Genomic sequence for Mus musculus, clone RP23-334N23, complete sequence Length = 117000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 tctagtataaaccactaaaaa 317 ||||||||||||||||||||| Sbjct: 50376 tctagtataaaccactaaaaa 50396
>gb|AC007846.12| Homo sapiens chromosome 17, clone CTC-803F22, complete sequence Length = 160034 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 caacagattccaaaagaagaa 344 ||||||||||||||||||||| Sbjct: 81367 caacagattccaaaagaagaa 81347
>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete sequence Length = 89779 Score = 42.1 bits (21), Expect = 2.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 519 ggtttccacccactctcctgcatctttcgtgcctgccgttgtctttgctcaagcctcaac 578 |||||||| || ||||| ||||||| || ||||| | ||||||||| || | ||||||| Sbjct: 79010 ggtttccaacctctctcttgcatctctctcgcctgtctttgtctttgttccaacctcaac 78951 Query: 579 ttctc 583 ||||| Sbjct: 78950 ttctc 78946
>gb|AC154497.2| Mus musculus BAC clone RP24-112C15 from chromosome 17, complete sequence Length = 176161 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 586 catttgctctttcatattcaccattctct 614 |||||||||||||| | |||||||||||| Sbjct: 35311 catttgctctttcaaactcaccattctct 35283
>gb|AC068718.6| Homo sapiens BAC clone RP11-123G24 from 2, complete sequence Length = 161955 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 catgctttactattctttggc 97 ||||||||||||||||||||| Sbjct: 48704 catgctttactattctttggc 48684
>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 324604 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 ctcttttctctggattcccag 462 ||||||||||||||||||||| Sbjct: 160940 ctcttttctctggattcccag 160960
>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence Length = 185368 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 147067 caagcctcaacttctcagcat 147087
>emb|AL928988.14| Mouse DNA sequence from clone RP23-402M7 on chromosome 2, complete sequence Length = 121977 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 50766 caagcctcaacttctcagcat 50786
>emb|BX005220.7| Zebrafish DNA sequence from clone DKEY-82D4 in linkage group 1, complete sequence Length = 170985 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 cagctgctcttttctctggat 456 ||||||||||||||||||||| Sbjct: 156667 cagctgctcttttctctggat 156647
>gb|BC072570.1| Mus musculus cDNA clone IMAGE:5719559 Length = 4255 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 caagcctcaacttctcagcat 588 ||||||||||||||||||||| Sbjct: 1149 caagcctcaacttctcagcat 1129
>emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete sequence Length = 216559 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 586 catttgctctttcatattcaccattctct 614 |||||||||||||| | |||||||||||| Sbjct: 9850 catttgctctttcaaactcaccattctct 9878
>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence Length = 199737 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tacatattcagatatacaca 131 |||||||||||||||||||| Sbjct: 27749 tacatattcagatatacaca 27768
>gb|AC150653.5| Bos taurus BAC CH240-226L9 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 158246 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atacacaaatggcctatata 144 |||||||||||||||||||| Sbjct: 54687 atacacaaatggcctatata 54706
>gb|AC150694.2| Bos taurus BAC CH240-144A17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 163920 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 atacacaaatggcctatata 144 |||||||||||||||||||| Sbjct: 15470 atacacaaatggcctatata 15451
>gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete sequence Length = 186286 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 ggaaaaacaatgtatctgaaagggcagc 262 ||||||||||||||||||| ||||||| Sbjct: 55303 ggaaaaacaatgtatctgattgggcagc 55276
>gb|AC127361.4| Mus musculus BAC clone RP23-125M8 from chromosome 17, complete sequence Length = 201331 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 attccaaaagaagaacagag 349 |||||||||||||||||||| Sbjct: 155743 attccaaaagaagaacagag 155762
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 attccaaaagaagaacagag 349 |||||||||||||||||||| Sbjct: 68557 attccaaaagaagaacagag 68576
>gb|BC056062.1| Xenopus laevis chronic myelogenous leukemia tumor antigen 66, mRNA (cDNA clone MGC:69032 IMAGE:4964693), complete cds Length = 2026 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 tttcatattcaccattctct 614 |||||||||||||||||||| Sbjct: 752 tttcatattcaccattctct 733
>gb|AC091302.5| Oryza sativa chromosome 3 BAC OSJNBb0015I21 genomic sequence, complete sequence Length = 101073 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 8490 atgtacggaaaaacaatgta 8509
>gb|AC146588.14| Medicago truncatula clone mth2-145c3, complete sequence Length = 116965 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 cagcatttgctctttcatat 602 |||||||||||||||||||| Sbjct: 107321 cagcatttgctctttcatat 107340
>emb|AL583806.7| Human DNA sequence from clone RP11-10F17 on chromosome 6 Contains the C6orf58 gene and the 5' end of a novel gene, complete sequence Length = 114100 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 tttcatattcaccattctct 614 |||||||||||||||||||| Sbjct: 37519 tttcatattcaccattctct 37538
>gb|AC164578.5| Mus musculus BAC RP23-15E20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 225564 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 aacagattccaaaagaagaa 344 |||||||||||||||||||| Sbjct: 166627 aacagattccaaaagaagaa 166608
>emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 67 Length = 200001 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atgccatagattgataagagatat 48 |||||||||| ||||||||||||| Sbjct: 105530 atgccatagactgataagagatat 105507
>emb|AL035602.1|ATT29A15 Arabidopsis thaliana DNA chromosome 4, BAC clone T29A15 (ESSA project) Length = 95679 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atgccatagattgataagagatat 48 |||||||||| ||||||||||||| Sbjct: 44820 atgccatagactgataagagatat 44797
>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence Length = 229964 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gaggtttccacccactctcc 536 |||||||||||||||||||| Sbjct: 12268 gaggtttccacccactctcc 12287
>gb|AC009930.7| Homo sapiens chromosome 8, clone RP11-114O8, complete sequence Length = 165662 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attccaaaagaagaacagag 349 |||||||||||||||||||| Sbjct: 83042 attccaaaagaagaacagag 83023
>gb|AC084823.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-290L7, Complete Sequence, complete sequence Length = 212133 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gcagccttcccagctgctct 445 |||||||||||||||||||| Sbjct: 182775 gcagccttcccagctgctct 182756
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 522 ttccacccactctcctgcatctttcgtgcctg 553 ||||| ||||||||||||||||| | |||||| Sbjct: 99235 ttccaaccactctcctgcatcttccttgcctg 99266
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 atgcatgctttactattctt 93 |||||||||||||||||||| Sbjct: 76326 atgcatgctttactattctt 76345
>dbj|AK163197.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730084F04 product:unclassifiable, full insert sequence Length = 2337 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 acttctcagcatttgctctt 596 |||||||||||||||||||| Sbjct: 2271 acttctcagcatttgctctt 2252
>emb|CR338865.2| Gallus gallus finished cDNA, clone ChEST1020f23 Length = 893 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acacaaatggcctatataac 146 |||||||||||||||||||| Sbjct: 281 acacaaatggcctatataac 300
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 522 ttccacccactctcctgcatctttcgtgcctg 553 ||||| ||||||||||||||||| | |||||| Sbjct: 21235124 ttccaaccactctcctgcatcttccttgcctg 21235093
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 15942888 atgtacggaaaaacaatgta 15942869
>gb|AC100735.15| Mus musculus chromosome 7, clone RP24-331F7, complete sequence Length = 179974 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gaggtttccacccactctcc 536 |||||||||||||||||||| Sbjct: 173467 gaggtttccacccactctcc 173486
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 138725 atgtacggaaaaacaatgta 138744
>gb|AC104946.4| Homo sapiens chromosome 8, clone RP11-946L20, complete sequence Length = 200292 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attccaaaagaagaacagag 349 |||||||||||||||||||| Sbjct: 4786 attccaaaagaagaacagag 4767
>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_F01 Length = 120026 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 atgtacggaaaaacaatgta 248 |||||||||||||||||||| Sbjct: 86563 atgtacggaaaaacaatgta 86544
>gb|AE003812.4| Drosophila melanogaster chromosome 2R, section 38 of 73 of the complete sequence Length = 255772 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 ggaaaaacaatgtatctgaaagggcagc 262 ||||||||||||||||||| ||||||| Sbjct: 180160 ggaaaaacaatgtatctgattgggcagc 180133
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaaaatggaaccaacagatt 332 |||||||||||||||||||| Sbjct: 5976052 aaaaatggaaccaacagatt 5976033
>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence Length = 195034 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 attccaaaagaagaacagag 349 |||||||||||||||||||| Sbjct: 103656 attccaaaagaagaacagag 103637
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 522 ttccacccactctcctgcatctttcgtgcctg 553 ||||| ||||||||||||||||| | |||||| Sbjct: 21246388 ttccaaccactctcctgcatcttccttgcctg 21246357
>gb|AC004306.1|AC004306 Drosophila melanogaster DNA sequence (P1 DS01386 (D198)), complete sequence Length = 61849 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 235 ggaaaaacaatgtatctgaaagggcagc 262 ||||||||||||||||||| ||||||| Sbjct: 15777 ggaaaaacaatgtatctgattgggcagc 15750
>gb|M79353.1|HIVENVMA7 Human immunodeficiency virus type 1 (clone MA7) glycoprotein 120 (env) gene, 5' end Length = 1566 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 ttgctctttcatattcacca 608 |||||||||||||||||||| Sbjct: 480 ttgctctttcatattcacca 499
>emb|AL603837.8| Mouse DNA sequence from clone RP23-254F2 on chromosome 15, complete sequence Length = 202904 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 gcagccttcccagctgctct 445 |||||||||||||||||||| Sbjct: 194122 gcagccttcccagctgctct 194103
>gb|AC164983.2| Mus musculus BAC clone RP23-16J24 from chromosome 17, complete sequence Length = 224370 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tacatattcagatatacaca 131 |||||||||||||||||||| Sbjct: 95841 tacatattcagatatacaca 95860
>emb|AL731811.24| Mouse DNA sequence from clone RP23-60A1 on chromosome X, complete sequence Length = 167102 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 acttctcagcatttgctctt 596 |||||||||||||||||||| Sbjct: 148000 acttctcagcatttgctctt 148019 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,858,287 Number of Sequences: 3902068 Number of extensions: 5858287 Number of successful extensions: 117259 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116892 Number of HSP's gapped (non-prelim): 350 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)