ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1l18 |
|---|---|
| Clone Library Name | barley_pub |
>S1FA2_ORYSA (Q7XLX6) DNA-binding protein S1FA2| Length = 80 Score = 73.6 bits (179), Expect = 4e-13 Identities = 42/80 (52%), Positives = 46/80 (57%) Frame = -2 Query: 460 MAEQFAESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXX 281 MA+QFA+SANNV+IEEVNKGLNPGMI VGNYALY+YAQ Sbjct: 1 MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKP 60 Query: 280 XXXXXXXXXXXKQGVSAPGE 221 KQGVSAPGE Sbjct: 61 VSKKKMKREKLKQGVSAPGE 80
>S1FA1_ORYSA (P42553) DNA-binding protein S1FA1| Length = 76 Score = 59.7 bits (143), Expect = 6e-09 Identities = 35/75 (46%), Positives = 39/75 (52%) Frame = -2 Query: 445 AESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXX 266 A+ +NN+IIEEVNKGLNPG I VGNYALY+YAQ Sbjct: 2 ADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKK 61 Query: 265 XXXXXXKQGVSAPGE 221 KQGVSAPGE Sbjct: 62 LKREKLKQGVSAPGE 76
>S1FA_MAIZE (P42554) DNA-binding protein S1FA (Fragment)| Length = 63 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/63 (44%), Positives = 29/63 (46%) Frame = -2 Query: 409 NKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSA 230 NKGLNPGM+ VGNYALY YAQ KQGVSA Sbjct: 1 NKGLNPGMVVXLVVASFLLIFFVGNYALYXYAQKTLPPKKKKPVSKKKLKKEKLKQGVSA 60 Query: 229 PGE 221 PGE Sbjct: 61 PGE 63
>S1FA2_ARATH (Q42337) DNA-binding protein S1FA2| Length = 76 Score = 35.4 bits (80), Expect = 0.11 Identities = 23/73 (31%), Positives = 29/73 (39%) Frame = -2 Query: 439 SANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXX 260 SA ++E KGLNPG+I + NY +Y+YAQ Sbjct: 6 SAGKAVVEA--KGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLK 63 Query: 259 XXXXKQGVSAPGE 221 KQGV PGE Sbjct: 64 REKLKQGVPVPGE 76
>S1FA3_ARATH (Q93VI0) DNA-binding protein S1FA3| Length = 73 Score = 34.3 bits (77), Expect = 0.26 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = -2 Query: 409 NKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSA 230 +KGLNPG+I VGN+ LY YAQ KQGV Sbjct: 11 SKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQV 70 Query: 229 PGE 221 PGE Sbjct: 71 PGE 73
>S1FA_SPIOL (P42552) DNA-binding protein S1FA| Length = 70 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/62 (35%), Positives = 25/62 (40%) Frame = -2 Query: 406 KGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSAP 227 KGLNPG+I VGN+ LY YAQ KQGV+ P Sbjct: 9 KGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAPP 68 Query: 226 GE 221 GE Sbjct: 69 GE 70
>S1FA1_ARATH (P42551) DNA-binding protein S1FA1| Length = 76 Score = 33.1 bits (74), Expect = 0.57 Identities = 21/62 (33%), Positives = 24/62 (38%) Frame = -2 Query: 406 KGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSAP 227 KGLNPG+I + NY LY+YAQ KQGV P Sbjct: 15 KGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVP 74 Query: 226 GE 221 GE Sbjct: 75 GE 76
>ADA1D_RAT (P23944) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) (RA42) Length = 561 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 186 LCWAPFYLIKKTYQLEPQRLFM*KPCX*VVHRRYWTPYFSELIN 55 LCW PF+ + L PQ KP V +W YF+ +N Sbjct: 353 LCWFPFFFVLPLGSLFPQL----KPSEGVFKVIFWLGYFNSCVN 392
>ADA1D_HUMAN (P25100) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) (Alpha adrenergic receptor 1a) Length = 572 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 186 LCWAPFYLIKKTYQLEPQRLFM*KPCX*VVHRRYWTPYFSELIN 55 LCW PF+ + L PQ KP V +W YF+ +N Sbjct: 359 LCWFPFFFVLPLGSLFPQL----KPSEGVFKVIFWLGYFNSCVN 398
>ADA1D_PIG (Q9TTM9) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) Length = 571 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 186 LCWAPFYLIKKTYQLEPQRLFM*KPCX*VVHRRYWTPYFSELIN 55 LCW PF+ + L PQ KP V +W YF+ +N Sbjct: 359 LCWFPFFFVLPLGSLFPQL----KPSEGVFKVIFWLGYFNSCVN 398
>ADA1D_MOUSE (P97714) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor) Length = 562 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 186 LCWAPFYLIKKTYQLEPQRLFM*KPCX*VVHRRYWTPYFSELIN 55 LCW PF+ + L PQ KP V +W YF+ +N Sbjct: 353 LCWFPFFFVLPLGSLFPQL----KPSEGVFKVIFWLGYFNSCVN 392
>ADA1D_RABIT (O02666) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)| (Alpha 1D-adrenoreceptor) Length = 576 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -3 Query: 186 LCWAPFYLIKKTYQLEPQRLFM*KPCX*VVHRRYWTPYFSELIN 55 LCW PF+ + L PQ KP V +W YF+ +N Sbjct: 364 LCWFPFFFVLPLGSLFPQL----KPSEGVFKVIFWLGYFNSCVN 403
>GNRR2_CLAGA (O42329) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 29.3 bits (64), Expect = 8.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 195 SIALCWAPFYLIKKTYQLEPQRL 127 S +CW P+YL+ Y +PQ L Sbjct: 277 SFVICWTPYYLLGIWYWFQPQML 299 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,793,150 Number of Sequences: 219361 Number of extensions: 1162223 Number of successful extensions: 3018 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2979 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3015 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
