ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2a15 |
|---|---|
| Clone Library Name | barley_pub |
>Y1464_METJA (Q58859) Hypothetical GTP-binding protein MJ1464| Length = 373 Score = 34.3 bits (77), Expect = 0.39 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Frame = -1 Query: 638 KWVRFGKDLELLDSPGILPMRISDQ---TAALKLAICDDIGERSYDFADVAAILVQILLR 468 +WVR K+++L+D+PG+L MR D + AL+L ++ IL +I Sbjct: 149 QWVRLTKNIKLMDTPGVLEMRDEDDLVISGALRLEKVEN------PIPPALKILSRINNF 202 Query: 467 HPAVGSEAFRKRYKIDVDSDCGKLFVTKLSVHLFNG--DTTQAAFRILSDFRKGRFGWVA 294 ++ E F Y+ +VD + K K S G D + A I+ +++ G+ + Sbjct: 203 DNSIIKEYFGVDYE-EVDEELLKKIGNKRSYLTKGGEVDLVRTAKTIIKEYQDGKLNYYK 261 Query: 293 LE 288 ++ Sbjct: 262 VD 263
>NOG2_SCHPO (O14236) Nucleolar GTP-binding protein 2| Length = 537 Score = 33.1 bits (74), Expect = 0.87 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Frame = -1 Query: 638 KWVRFGKDLELLDSPGILPMRISDQTAALKLAICDDIGERSYDFADVAAILVQILLRHPA 459 ++V K + L+D PGI+P +D A L L + S A + +L + ++H Sbjct: 349 QYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKH-- 406 Query: 458 VGSEAFRKRYKIDVDSDCGKLFVTKLSV---HLFNG---DTTQAAFRILSDFRKGRFGW 300 + Y+I +D + F+ KL+ L G D A +L+DF +G+ W Sbjct: 407 -----LERTYEISGWNDSTE-FLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPW 459
>PDE4C_DROME (Q9W4S9) cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G| (EC 3.1.4.17) (Learning/memory process protein) (Protein dunce) Length = 983 Score = 30.8 bits (68), Expect = 4.3 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +1 Query: 358 SPLNKWTES--FVTNNLPQSLSTSILYRFRNASEPTAGCLNNICTRMAATSAKSYDLSPI 531 SPL + S V NLPQ S LYR + E + ++ + + + + ++P Sbjct: 322 SPLEGGSPSAGLVLQNLPQRRE-SFLYRSDSDFEMSPKSMSRNSSIASESHGEDLIVTPF 380 Query: 532 SSQIASLRAAV*SLILIGNIPGESNSSR 615 + +ASLR+ +L+ + N+P + S R Sbjct: 381 AQILASLRSVRNNLLSLTNVPASNKSRR 408
>TRPE_SCHPO (O94582) Probable anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 489 Score = 30.0 bits (66), Expect = 7.3 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Frame = -1 Query: 566 QTAALKLAICDDIG---ERSYDFADVAAILVQILLRHPAVGSEAFRKRY-----KIDVDS 411 QT + +C G E +Y+ A +++ L P + +K + K +V Sbjct: 153 QTVKIISHVCIQQGRPIEEAYEAAVFKINMLKKKLESPEIPLPEQKKVHLGYEAKSNVGE 212 Query: 410 DCGKLFVTKLSVHLFNGDTTQA 345 D K FV+ L H+FNGD QA Sbjct: 213 DGYKAFVSNLKEHIFNGDIFQA 234
>MAGC3_HUMAN (Q8TD91) Melanoma-associated antigen C3 (MAGE-C3 antigen)| (Hepatocellular carcinoma-associated antigen 2) Length = 643 Score = 30.0 bits (66), Expect = 7.3 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = +3 Query: 183 REIVLSLRYKGHCDQRAS*V*SLVKCCVYCSCWRSLQGNP 302 RE+ L LR G DQR SLV C Y WR+L G+P Sbjct: 60 REVRLFLR-GGTSDQRMD---SLVLCPTYFKLWRTLSGSP 95
>PURL_LACCA (P35852) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 740 Score = 29.6 bits (65), Expect = 9.6 Identities = 36/129 (27%), Positives = 46/129 (35%) Frame = -1 Query: 512 DFADVAAILVQILLRHPAVGSEAFRKRYKIDVDSDCGKLFVTKLSVHLFNGDTTQAAFRI 333 D DV IL+ G+E + KR + V S L +T F T AF Sbjct: 464 DSKDVTCILIA-----GGCGNECWLKRARNLVASGAEPLGITDCLN--FGDPTKPEAFYE 516 Query: 332 LSDFRKGRFGWVALERPPT*TINTTLYQRSYSRRTLITMSFVAQ**DNFSGPQPMCGMRN 153 L++ KG P + N +LY + P PM GM Sbjct: 517 LAEAAKGIIAATKAFNAPVISGNVSLYNETNGEAIY---------------PTPMIGMVG 561 Query: 152 LIEDRVTIT 126 LIED TIT Sbjct: 562 LIEDLSTIT 570
>ENGA_MYCLE (Q49884) GTP-binding protein engA| Length = 461 Score = 29.6 bits (65), Expect = 9.6 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 711 LINRLLKRKKCVQQHXGPGVTRE-LKVGAFWEGSRAV 604 L+NR+L R++ V Q PGVTR+ + A W G R V Sbjct: 40 LVNRILGRREAVVQDV-PGVTRDRVSYDAMWTGRRFV 75
>YMY7_YEAST (Q03151) Hypothetical 42.1 kDa protein in SNZ1-YPK2 intergenic| region Length = 367 Score = 29.6 bits (65), Expect = 9.6 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -1 Query: 617 DLELLDSPGI-LPMRISDQTAALKLAICDDIGERSYD 510 ++ L+D+PGI +P R+SD L LA+C + D Sbjct: 216 EIYLIDTPGIGVPGRVSDHNRMLGLALCGSVKNNLVD 252
>Y1583_PASMU (Q9CKM8) Hypothetical protein PM1583 precursor| Length = 204 Score = 29.6 bits (65), Expect = 9.6 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 184 EKLSYHCATKDIVINVRREYDL 249 E++S +C TKD +IN R YD+ Sbjct: 94 ERVSTNCKTKDTIINTRTRYDV 115
>RDRP_BSNV (Q8AZL8) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 867 Score = 29.6 bits (65), Expect = 9.6 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +1 Query: 310 LPFRKSDKMRKAAWVVSPLNKWTESFVTNNLPQSLSTSILYRFRN 444 L F K+++ K AW+ N W+ F T+ L ++S I+ +N Sbjct: 305 LLFPKAERYEKKAWLTKTRNIWSAPFPTHLLLSTISWPIMNSSKN 349
>YHC1_YEAST (P23180) Hypothetical 53.1 kDa protein in SPO11-OPI1 intergenic| region Length = 465 Score = 29.6 bits (65), Expect = 9.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 415 STSILYRFRNASEPTAGCLNNICTRMAATSAK 510 ST+I + +S+P + C NN+ R A+ SAK Sbjct: 46 STTITFSMEESSKPVSVCFNNVFLRDASHSAK 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,471,915 Number of Sequences: 219361 Number of extensions: 2015645 Number of successful extensions: 4811 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4673 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4803 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
