ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK063573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
2ref|XM_475272.1| Oryza sativa (japonica cultivar-group), predic... 266 9e-68
3gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 129 1e-26
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5gb|U80032.1| Caenorhabditis elegans cosmid C32E12, complete sequ... 42 2.5
6gb|BC060268.1| Mus musculus gene model 444, (NCBI), mRNA (cDNA c... 42 2.5
7gb|AC117693.9| Mus musculus chromosome 1, clone RP23-448D22, com... 42 2.5
8ref|XM_990700.1| PREDICTED: Mus musculus gene model 444, (NCBI) ... 42 2.5
9ref|XM_144253.6| PREDICTED: Mus musculus gene model 444, (NCBI) ... 42 2.5
10ref|XM_908279.2| PREDICTED: Mus musculus gene model 444, (NCBI) ... 42 2.5
11gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, compl... 42 2.5
12gb|AC110909.10| Mus musculus chromosome 7, clone RP24-186G5, com... 40 9.8
13gb|AC149779.3| Bos taurus BAC CH240-5F6 (Children's Hospital Oa... 40 9.8
14gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosom... 40 9.8
15gb|AC121995.2| Mus musculus BAC clone RP24-310M4 from 7, complet... 40 9.8
16gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete se... 40 9.8
17gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete s... 40 9.8
18gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome... 40 9.8
19emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on ch... 40 9.8
20gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 40 9.8
21dbj|AK162557.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 9.8
22gb|AC156033.6| Mus musculus BAC clone RP23-377G8 from chromosome... 40 9.8
23gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosom... 40 9.8
24gb|AC142245.14| Mus musculus chromosome 15, clone RP23-82J20, co... 40 9.8
25emb|BX469891.9| Zebrafish DNA sequence from clone CH211-226B21 i... 40 9.8
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
27emb|AL928927.10| Zebrafish DNA sequence from clone CH211-113H16,... 40 9.8
28dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
29emb|AL928835.6| Zebrafish DNA sequence from clone CH211-201P7 in... 40 9.8
30gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, com... 40 9.8 
>dbj|AK063573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G09, full
            insert sequence
          Length = 1420

 Score =  268 bits (135), Expect = 2e-68
 Identities = 367/441 (83%), Gaps = 4/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 268  attgttcatgttggaggtctctccaaggcaacccaaccaaatctgcctttccggaagtcg 327
            |||| ||||||||| |||||||||| ||| || || |||||| ||||||||||| |||| 
Sbjct: 1135 attgctcatgttgggggtctctccagggccacgcagccaaatttgcctttccggtagtca 1076

                                                                        
Query: 328  gacaagatgcggaaagctgcttgggtggtatctccattgaacaagtggactgagagcttc 387
            |||||||||||||| ||||||||| ||| |||||||||||||||||| || |||||||| 
Sbjct: 1075 gacaagatgcggaaggctgcttggctggcatctccattgaacaagtgaacagagagcttt 1016

                                                                        
Query: 388  gtgacaaacaatttgccgcagtcactgtctacatcgatcttgtatcgttttcgaaatgcc 447
            || ||||||| ||| || || || ||||| |  || | | | || ||| ||||||| || 
Sbjct: 1015 gtcacaaacattttaccacaatcgctgtccatgtcaagcctatagcgtcttcgaaacgct 956

                                                                        
Query: 448  tcagaaccaacagccggatgtcttaacaatatctgcacaagaatggctgccacatcagca 507
            ||||  || ||||| |||||||| |  |||| ||| || ||||| |||||||||||||||
Sbjct: 955  tcagggcctacagctggatgtctcactaataactgtacgagaatcgctgccacatcagca 896

                                                                        
Query: 508  aaatcatatgatctttctccgatatcatcacagatagcaagcttaagagcagctgtctga 567
            || ||||| || |||||||| ||||||||||| |||||||| || |  ||||||||||| 
Sbjct: 895  aagtcatacgacctttctcctatatcatcacatatagcaagtttgattgcagctgtctgg 836

                                                                        
Query: 568  tcactaattctcattggcaatattccaggcgagtctaacagctctagatccttcccaaaa 627
            ||||| |||| ||||||||| || ||||| || ||||| ||||||| |||  | ||||||
Sbjct: 835  tcacttattcgcattggcaaaatgccaggtgaatctaatagctctaaatcacttccaaaa 776

                                                                        
Query: 628  cgcacccactttcagttctcttgtgacacctggtcctangtgctgctggacacatttctt 687
            || |||||| ||||| |||||||| ||||||||| ||| | |||||||||||||||   |
Sbjct: 775  cgaacccac-ttcagctctcttgtaacacctggt-ctaggcgctgctggacacatt--ct 720

                                 
Query: 688  tcgttttagcaagcgattaat 708
            |||||||||||||||||||||
Sbjct: 719  tcgttttagcaagcgattaat 699
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>ref|XM_475272.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1116

 Score =  266 bits (134), Expect = 9e-68
 Identities = 363/436 (83%), Gaps = 4/436 (0%)
 Strand = Plus / Minus

                                                                        
Query: 273  tcatgttggaggtctctccaaggcaacccaaccaaatctgcctttccggaagtcggacaa 332
            ||||||||| |||||||||| ||| || || |||||| ||||||||||| |||| |||||
Sbjct: 1116 tcatgttgggggtctctccagggccacgcagccaaatttgcctttccggtagtcagacaa 1057

                                                                        
Query: 333  gatgcggaaagctgcttgggtggtatctccattgaacaagtggactgagagcttcgtgac 392
            ||||||||| ||||||||| ||| |||||||||||||||||| || |||||||| || ||
Sbjct: 1056 gatgcggaaggctgcttggctggcatctccattgaacaagtgaacagagagctttgtcac 997

                                                                        
Query: 393  aaacaatttgccgcagtcactgtctacatcgatcttgtatcgttttcgaaatgcctcaga 452
            ||||| ||| || || || ||||| |  || | | | || ||| ||||||| || |||| 
Sbjct: 996  aaacattttaccacaatcgctgtccatgtcaagcctatagcgtcttcgaaacgcttcagg 937

                                                                        
Query: 453  accaacagccggatgtcttaacaatatctgcacaagaatggctgccacatcagcaaaatc 512
             || ||||| |||||||| |  |||| ||| || ||||| ||||||||||||||||| ||
Sbjct: 936  gcctacagctggatgtctcactaataactgtacgagaatcgctgccacatcagcaaagtc 877

                                                                        
Query: 513  atatgatctttctccgatatcatcacagatagcaagcttaagagcagctgtctgatcact 572
            ||| || |||||||| ||||||||||| |||||||| || |  ||||||||||| |||||
Sbjct: 876  atacgacctttctcctatatcatcacatatagcaagtttgattgcagctgtctggtcact 817

                                                                        
Query: 573  aattctcattggcaatattccaggcgagtctaacagctctagatccttcccaaaacgcac 632
             |||| ||||||||| || ||||| || ||||| ||||||| |||  | |||||||| ||
Sbjct: 816  tattcgcattggcaaaatgccaggtgaatctaatagctctaaatcacttccaaaacgaac 757

                                                                        
Query: 633  ccactttcagttctcttgtgacacctggtcctangtgctgctggacacatttctttcgtt 692
            |||| ||||| |||||||| ||||||||| ||| | |||||||||||||||   ||||||
Sbjct: 756  ccac-ttcagctctcttgtaacacctggt-ctaggcgctgctggacacatt--cttcgtt 701

                            
Query: 693  ttagcaagcgattaat 708
            ||||||||||||||||
Sbjct: 700  ttagcaagcgattaat 685
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>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21,
              complete sequence
          Length = 137650

 Score =  129 bits (65), Expect = 1e-26
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                          
Query: 268    attgttcatgttggaggtctctccaaggcaacccaaccaaatctgcctttccggaagtcg 327
              |||| ||||||||| |||||||||| ||| || || |||||| ||||||||||| |||| 
Sbjct: 109696 attgctcatgttgggggtctctccagggccacgcagccaaatttgcctttccggtagtca 109755

                                                                          
Query: 328    gacaagatgcggaaagctgcttgggtggtatctccattgaacaagtggactgagagcttc 387
              |||||||||||||| ||||||||| ||| |||||||||||||||||| || |||||||| 
Sbjct: 109756 gacaagatgcggaaggctgcttggctggcatctccattgaacaagtgaacagagagcttt 109815

                       
Query: 388    gtgacaaac 396
              || ||||||
Sbjct: 109816 gtcacaaac 109824



 Score =  119 bits (60), Expect = 1e-23
 Identities = 150/180 (83%)
 Strand = Plus / Plus

                                                                          
Query: 457    acagccggatgtcttaacaatatctgcacaagaatggctgccacatcagcaaaatcatat 516
              ||||| |||||||| |  |||| ||| || ||||| ||||||||||||||||| ||||| 
Sbjct: 110102 acagctggatgtctcactaataactgtacgagaatcgctgccacatcagcaaagtcatac 110161

                                                                          
Query: 517    gatctttctccgatatcatcacagatagcaagcttaagagcagctgtctgatcactaatt 576
              || |||||||| ||||||||||| |||||||| || |  ||||||||||| ||||| |||
Sbjct: 110162 gacctttctcctatatcatcacatatagcaagtttgattgcagctgtctggtcacttatt 110221

                                                                          
Query: 577    ctcattggcaatattccaggcgagtctaacagctctagatccttcccaaaacgcacccac 636
              | ||||||||| || ||||| || ||||| ||||||| |||  | |||||||| ||||||
Sbjct: 110222 cgcattggcaaaatgccaggtgaatctaatagctctaaatcacttccaaaacgaacccac 110281



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/71 (88%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                          
Query: 638    ttcagttctcttgtgacacctggtcctangtgctgctggacacatttctttcgttttagc 697
              ||||| |||||||| |||||||||| || | |||||||||||||||   |||||||||||
Sbjct: 110415 ttcagctctcttgtaacacctggtc-taggcgctgctggacacattc--ttcgttttagc 110471

                         
Query: 698    aagcgattaat 708
              |||||||||||
Sbjct: 110472 aagcgattaat 110482
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  129 bits (65), Expect = 1e-26
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                            
Query: 268      attgttcatgttggaggtctctccaaggcaacccaaccaaatctgcctttccggaagtcg 327
                |||| ||||||||| |||||||||| ||| || || |||||| ||||||||||| |||| 
Sbjct: 20982918 attgctcatgttgggggtctctccagggccacgcagccaaatttgcctttccggtagtca 20982977

                                                                            
Query: 328      gacaagatgcggaaagctgcttgggtggtatctccattgaacaagtggactgagagcttc 387
                |||||||||||||| ||||||||| ||| |||||||||||||||||| || |||||||| 
Sbjct: 20982978 gacaagatgcggaaggctgcttggctggcatctccattgaacaagtgaacagagagcttt 20983037

                         
Query: 388      gtgacaaac 396
                || ||||||
Sbjct: 20983038 gtcacaaac 20983046



 Score =  119 bits (60), Expect = 1e-23
 Identities = 150/180 (83%)
 Strand = Plus / Plus

                                                                            
Query: 457      acagccggatgtcttaacaatatctgcacaagaatggctgccacatcagcaaaatcatat 516
                ||||| |||||||| |  |||| ||| || ||||| ||||||||||||||||| ||||| 
Sbjct: 20983324 acagctggatgtctcactaataactgtacgagaatcgctgccacatcagcaaagtcatac 20983383

                                                                            
Query: 517      gatctttctccgatatcatcacagatagcaagcttaagagcagctgtctgatcactaatt 576
                || |||||||| ||||||||||| |||||||| || |  ||||||||||| ||||| |||
Sbjct: 20983384 gacctttctcctatatcatcacatatagcaagtttgattgcagctgtctggtcacttatt 20983443

                                                                            
Query: 577      ctcattggcaatattccaggcgagtctaacagctctagatccttcccaaaacgcacccac 636
                | ||||||||| || ||||| || ||||| ||||||| |||  | |||||||| ||||||
Sbjct: 20983444 cgcattggcaaaatgccaggtgaatctaatagctctaaatcacttccaaaacgaacccac 20983503



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/71 (88%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                            
Query: 638      ttcagttctcttgtgacacctggtcctangtgctgctggacacatttctttcgttttagc 697
                ||||| |||||||| |||||||||| || | |||||||||||||||   |||||||||||
Sbjct: 20983637 ttcagctctcttgtaacacctggtc-taggcgctgctggacacattc--ttcgttttagc 20983693

                           
Query: 698      aagcgattaat 708
                |||||||||||
Sbjct: 20983694 aagcgattaat 20983704
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>gb|U80032.1| Caenorhabditis elegans cosmid C32E12, complete sequence
          Length = 45389

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 356   tatctccattgaacaagtgga 376
             |||||||||||||||||||||
Sbjct: 21135 tatctccattgaacaagtgga 21115
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>gb|BC060268.1| Mus musculus gene model 444, (NCBI), mRNA (cDNA clone IMAGE:6416369),
            partial cds
          Length = 3630

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  tccgatatcatcacagatagc 545
            |||||||||||||||||||||
Sbjct: 3094 tccgatatcatcacagatagc 3114
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>gb|AC117693.9| Mus musculus chromosome 1, clone RP23-448D22, complete sequence
          Length = 193386

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 34     ctttcacatgctaatacatatccag 58
              ||||||||||||||| |||||||||
Sbjct: 125249 ctttcacatgctaatgcatatccag 125225
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>ref|XM_990700.1| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA
          Length = 4434

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  tccgatatcatcacagatagc 545
            |||||||||||||||||||||
Sbjct: 3310 tccgatatcatcacagatagc 3330
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>ref|XM_144253.6| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA
          Length = 4428

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  tccgatatcatcacagatagc 545
            |||||||||||||||||||||
Sbjct: 3304 tccgatatcatcacagatagc 3324
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>ref|XM_908279.2| PREDICTED: Mus musculus gene model 444, (NCBI) (Gm444), mRNA
          Length = 4428

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 525  tccgatatcatcacagatagc 545
            |||||||||||||||||||||
Sbjct: 3304 tccgatatcatcacagatagc 3324
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>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence
          Length = 247058

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 525    tccgatatcatcacagatagc 545
              |||||||||||||||||||||
Sbjct: 142886 tccgatatcatcacagatagc 142906
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>gb|AC110909.10| Mus musculus chromosome 7, clone RP24-186G5, complete sequence
          Length = 161738

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gaggtctctccaaggcaacc 300
             ||||||||||||||||||||
Sbjct: 12633 gaggtctctccaaggcaacc 12652
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>gb|AC149779.3| Bos taurus  BAC CH240-5F6 (Children's Hospital Oakland Research Institute
              Bovine BAC Library (male)) complete sequence
          Length = 181013

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tgtaacagcttacaaatata 22
              ||||||||||||||||||||
Sbjct: 102105 tgtaacagcttacaaatata 102086
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>gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosome 7, complete sequence
          Length = 185617

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   atagcaagcttaagagcagc 560
             ||||||||||||||||||||
Sbjct: 65487 atagcaagcttaagagcagc 65468
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>gb|AC121995.2| Mus musculus BAC clone RP24-310M4 from 7, complete sequence
          Length = 126991

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   atagcaagcttaagagcagc 560
             ||||||||||||||||||||
Sbjct: 38276 atagcaagcttaagagcagc 38295
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>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence
          Length = 112733

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 506   caaaatcatatgatctttctccga 529
             |||||||||||||||||| |||||
Sbjct: 77931 caaaatcatatgatctttgtccga 77954
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>gb|AC137554.15| Medicago truncatula clone mth2-17j18, complete sequence
          Length = 121248

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   caaaatcatatgatctttctccga 529
             |||||||||||||||||| |||||
Sbjct: 92149 caaaatcatatgatctttgtccga 92126
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>gb|AC165244.2| Mus musculus BAC clone RP24-498C9 from chromosome 14, complete
            sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  ttcatgttggaggtctctcc 291
            ||||||||||||||||||||
Sbjct: 8807 ttcatgttggaggtctctcc 8788
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>emb|AL359642.12| Human DNA sequence from clone RP11-507F17 on chromosome 9 Contains a
            kertain pseudogene, complete sequence
          Length = 122613

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  aattagattcctcattccac 166
            ||||||||||||||||||||
Sbjct: 5056 aattagattcctcattccac 5037
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>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tatccagctcagacctctag 71
             ||||||||||||||||||||
Sbjct: 37051 tatccagctcagacctctag 37070
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>dbj|AK162557.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630006P13 product:hypothetical
            protein, full insert sequence
          Length = 1547

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 541  atagcaagcttaagagcagc 560
            ||||||||||||||||||||
Sbjct: 1056 atagcaagcttaagagcagc 1037
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>gb|AC156033.6| Mus musculus BAC clone RP23-377G8 from chromosome 12, complete
            sequence
          Length = 216718

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   tatccagctcagacctctag 71
            ||||||||||||||||||||
Sbjct: 4393 tatccagctcagacctctag 4374
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>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete
             sequence
          Length = 157088

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 572   taattctcattggcaatatt 591
             ||||||||||||||||||||
Sbjct: 75574 taattctcattggcaatatt 75593
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>gb|AC142245.14| Mus musculus chromosome 15, clone RP23-82J20, complete sequence
          Length = 242954

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   tgtttattgttcatgttgga 282
             ||||||||||||||||||||
Sbjct: 66065 tgtttattgttcatgttgga 66046
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>emb|BX469891.9| Zebrafish DNA sequence from clone CH211-226B21 in linkage group 2,
             complete sequence
          Length = 175261

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ttgtgtttattgttcatgtt 279
             ||||||||||||||||||||
Sbjct: 40150 ttgtgtttattgttcatgtt 40131
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 628      cgcacccactttcagttctc 647
                ||||||||||||||||||||
Sbjct: 29439075 cgcacccactttcagttctc 29439056
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>emb|AL928927.10| Zebrafish DNA sequence from clone CH211-113H16, complete sequence
          Length = 168805

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   gtgttgtgtttattgttcatgttg 280
             ||||| ||||||||||||||||||
Sbjct: 39083 gtgttttgtttattgttcatgttg 39106
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 628    cgcacccactttcagttctc 647
              ||||||||||||||||||||
Sbjct: 101997 cgcacccactttcagttctc 101978
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>emb|AL928835.6| Zebrafish DNA sequence from clone CH211-201P7 in linkage group 1,
             complete sequence
          Length = 182427

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   gtgttgtgtttattgttcatgttg 280
             ||||| ||||||||||||||||||
Sbjct: 97299 gtgttttgtttattgttcatgttg 97276
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>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence
          Length = 196013

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gaggtctctccaaggcaacc 300
              ||||||||||||||||||||
Sbjct: 189427 gaggtctctccaaggcaacc 189446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,341,018
Number of Sequences: 3902068
Number of extensions: 5341018
Number of successful extensions: 94246
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94147
Number of HSP's gapped (non-prelim): 93
length of query: 713
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 690
effective length of database: 17,143,297,704
effective search space: 11828875415760
effective search space used: 11828875415760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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