Clone Information

BLAST Search Result

Clone Name	rbasd1l13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YCX4_OENHO (Q9MTN4) Hypothetical 8.4 kDa protein in ycf9-trnS in...	120	4e-27
2	PSBZ_WHEAT (P69695) Photosystem II reaction center Z protein	120	4e-27
3	PSBZ_SACOF (Q6ENX9) Photosystem II reaction center Z protein	120	4e-27
4	PSBZ_SACHY (Q6L3B0) Photosystem II reaction center Z protein	120	4e-27
5	PSBZ_HORVU (P69696) Photosystem II reaction center Z protein	120	4e-27
6	PSBZ_ORYSA (P12194) Photosystem II reaction center Z protein	118	1e-26
7	PSBZ_ORYNI (Q6ENI9) Photosystem II reaction center Z protein	118	1e-26
8	PSBZ_CALFE (Q7YJX5) Photosystem II reaction center Z protein	115	1e-25
9	PSBZ_ACOGR (Q5QA82) Photosystem II reaction center Z protein	113	4e-25
10	PSBZ_SPIOL (Q9M3M6) Photosystem II reaction center Z protein	112	7e-25
11	PSBZ_PEA (Q32902) Photosystem II reaction center Z protein	112	9e-25
12	PSBZ_MAGTR (Q5IHA8) Photosystem II reaction center Z protein	112	9e-25
13	PSBZ_MAGAC (Q5IHB0) Photosystem II reaction center Z protein	112	9e-25
14	PSBZ_LIRTU (Q5IHA9) Photosystem II reaction center Z protein	112	9e-25
15	PSBZ_ARATH (P56790) Photosystem II reaction center Z protein	112	1e-24
16	PSBZ_AMBTC (Q70Y06) Photosystem II reaction center Z protein	112	1e-24
17	PSBZ_PANGI (Q68S09) Photosystem II reaction center Z protein	111	2e-24
18	PSBZ_OENHO (Q9MTN5) Photosystem II reaction center Z protein	111	2e-24
19	PSBZ_LOTJA (Q9BBT2) Photosystem II reaction center Z protein	111	2e-24
20	PSBZ_TOBAC (P09974) Photosystem II reaction center Z protein	110	3e-24
21	PSBZ_ATRBE (P59706) Photosystem II reaction center Z protein	110	3e-24
22	PSBZ_NYMAL (Q6EW51) Photosystem II reaction center Z protein	110	5e-24
23	PSBZ_MAIZE (Q33300) Photosystem II reaction center Z protein	110	5e-24
24	PSBZ_ANTFO (P59705) Photosystem II reaction center Z protein	101	2e-21
25	PSBZ_MARPO (P09973) Photosystem II reaction center Z protein	100	3e-21
26	PSBZ_PSINU (Q8WI21) Photosystem II reaction center Z protein	98	2e-20
27	PSBZ_HUPLU (Q5SD09) Photosystem II reaction center Z protein	95	2e-19
28	PSBZ_ADICA (Q85FM4) Photosystem II reaction center Z protein	95	2e-19
29	PSBZ_CRYJA (Q5IHA3) Photosystem II reaction center Z protein	93	6e-19
30	PSBZ_CHAGL (Q8M9W6) Photosystem II reaction center Z protein	91	3e-18
31	PSBZ_PINTH (P41642) Photosystem II reaction center Z protein	91	4e-18
32	PSBZ_MESVI (Q9MUP9) Photosystem II reaction center Z protein	81	2e-15
33	PSBZ_NEPOL (Q9TKX2) Photosystem II reaction center Z protein	76	7e-14
34	PSBZ_CHLVU (P56313) Photosystem II reaction center Z protein	75	1e-13
35	PSBZ_CHLRE (P92276) Photosystem II reaction center Z protein	75	2e-13
36	PSBZ_SYNEL (Q8DHJ2) Photosystem II reaction center Z protein	67	3e-11
37	PSBZ_GRATL (Q6B8V1) Photosystem II reaction center Z protein	67	3e-11
38	PSBZ_PORPU (P51316) Photosystem II reaction center Z protein	65	1e-10
39	PSBZ_CYAPA (P17159) Photosystem II reaction center Z protein	64	5e-10
40	PSBZ_ANASP (Q8YQ44) Photosystem II reaction center Z protein	62	1e-09
41	PSBZ_EUGGR (P32095) Photosystem II reaction center Z protein	61	2e-09
42	PSBZ_SYNY3 (P73528) Photosystem II reaction center Z protein	61	3e-09
43	PSBZ_CYAME (Q85FY1) Photosystem II reaction center Z protein	57	4e-08
44	PSBZ_GUITH (O78503) Photosystem II reaction center Z protein	55	1e-07
45	PSBZ_SYNP6 (Q5N0X7) Photosystem II reaction center Z protein	45	2e-04
46	PSBZ_EUGMY (Q8SL91) Photosystem II reaction center Z protein (Fr...	41	0.003
47	PSBZ_SKECO (O96798) Photosystem II reaction center Z protein	40	0.008
48	PSBZ_EUGAN (Q8SL95) Photosystem II reaction center Z protein (Fr...	39	0.013
49	PSBZ_ODOSI (P49528) Photosystem II reaction center Z protein	38	0.029
50	PSBZ_EUGGA (Q8SL93) Photosystem II reaction center Z protein (Fr...	37	0.049
51	PSBZ_EUGST (Q8SL89) Photosystem II reaction center Z protein (Fr...	35	0.19
52	PSBZ_EUGVI (Q8SL87) Photosystem II reaction center Z protein (Fr...	35	0.24
53	SCN8A_HUMAN (Q9UQD0) Sodium channel protein type 8 alpha subunit...	33	0.54
54	SCN8A_MOUSE (Q9WTU3) Sodium channel protein type 8 alpha subunit...	33	0.71
55	BCDO1_CHICK (Q9I993) Beta,beta-carotene 15,15'-monooxygenase (EC...	33	0.71

>YCX4_OENHO (Q9MTN4) Hypothetical 8.4 kDa protein in ycf9-trnS intergenic|
           region (ORF75)
          Length = 75

 Score =  120 bits (300), Expect = 4e-27
 Identities = 59/70 (84%), Positives = 64/70 (91%)
 Frame = +3

Query: 120 MREFRIATRKTSPIHNDVPENTTFLLFDQPSGEANTRGTLITKTEEVAINAKTANWKAIV 299
           MRE RI TRKT+PIHNDVPENTTFLL DQPSGEANT GTLI+K++EVAINAKTANWKAIV
Sbjct: 1   MRELRIPTRKTNPIHNDVPENTTFLLLDQPSGEANTTGTLISKSDEVAINAKTANWKAIV 60

Query: 300 IFLILQATIK 329
           + LILQAT K
Sbjct: 61  MLLILQATNK 70

to top

>PSBZ_WHEAT (P69695) Photosystem II reaction center Z protein|
          Length = 62

 Score =  120 bits (300), Expect = 4e-27
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_SACOF (Q6ENX9) Photosystem II reaction center Z protein|
          Length = 62

 Score =  120 bits (300), Expect = 4e-27
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_SACHY (Q6L3B0) Photosystem II reaction center Z protein|
          Length = 62

 Score =  120 bits (300), Expect = 4e-27
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_HORVU (P69696) Photosystem II reaction center Z protein|
          Length = 62

 Score =  120 bits (300), Expect = 4e-27
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ORYSA (P12194) Photosystem II reaction center Z protein|
          Length = 62

 Score =  118 bits (296), Expect = 1e-26
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALI TSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIVTSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ORYNI (Q6ENI9) Photosystem II reaction center Z protein|
          Length = 62

 Score =  118 bits (296), Expect = 1e-26
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALI TSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIVTSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_CALFE (Q7YJX5) Photosystem II reaction center Z protein|
          Length = 62

 Score =  115 bits (287), Expect = 1e-25
 Identities = 58/62 (93%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M IAFQLAVFALIATSS+L+ISVP+VFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MIIAFQLAVFALIATSSILLISVPVVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ACOGR (Q5QA82) Photosystem II reaction center Z protein|
          Length = 62

 Score =  113 bits (283), Expect = 4e-25
 Identities = 56/62 (90%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLA+FALIATSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAIFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_SPIOL (Q9M3M6) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (281), Expect = 7e-25
 Identities = 55/62 (88%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFASPDGWS+NKN+VFSGTSLW+GLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNIVFSGTSLWLGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_PEA (Q32902) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (280), Expect = 9e-25
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALI TSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_MAGTR (Q5IHA8) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (280), Expect = 9e-25
 Identities = 57/62 (91%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFAS DGWS+NKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASSDGWSSNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_MAGAC (Q5IHB0) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (280), Expect = 9e-25
 Identities = 57/62 (91%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFAS DGWS+NKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASSDGWSSNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_LIRTU (Q5IHA9) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (280), Expect = 9e-25
 Identities = 57/62 (91%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFAS DGWS+NKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASSDGWSSNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ARATH (P56790) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (279), Expect = 1e-24
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALI TSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_AMBTC (Q70Y06) Photosystem II reaction center Z protein|
          Length = 62

 Score =  112 bits (279), Expect = 1e-24
 Identities = 56/62 (90%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFAS DGWS+NKN+VFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASSDGWSSNKNIVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_PANGI (Q68S09) Photosystem II reaction center Z protein|
          Length = 62

 Score =  111 bits (278), Expect = 2e-24
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT+AFQLAVFALIATSS+L+I VP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTLAFQLAVFALIATSSILLIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_OENHO (Q9MTN5) Photosystem II reaction center Z protein|
          Length = 62

 Score =  111 bits (278), Expect = 2e-24
 Identities = 56/62 (90%), Positives = 61/62 (98%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFASP+GWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIATSSLLLISVPVVFASPEGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_LOTJA (Q9BBT2) Photosystem II reaction center Z protein|
          Length = 62

 Score =  111 bits (278), Expect = 2e-24
 Identities = 56/62 (90%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWI LVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_TOBAC (P09974) Photosystem II reaction center Z protein|
          Length = 62

 Score =  110 bits (276), Expect = 3e-24
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT+AFQLAVFALIATS +L+ISVP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTLAFQLAVFALIATSLILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ATRBE (P59706) Photosystem II reaction center Z protein|
          Length = 62

 Score =  110 bits (276), Expect = 3e-24
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT+AFQLAVFALIATS +L+ISVP+VFASPDGWS+NKNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTLAFQLAVFALIATSLILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_NYMAL (Q6EW51) Photosystem II reaction center Z protein|
          Length = 62

 Score =  110 bits (274), Expect = 5e-24
 Identities = 55/61 (90%), Positives = 59/61 (96%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATSS+L+ISVP+VFASPDGWS+ KNVVFSGTSLWIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSKKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 121 I 119
           I
Sbjct: 61  I 61

to top

>PSBZ_MAIZE (Q33300) Photosystem II reaction center Z protein|
          Length = 62

 Score =  110 bits (274), Expect = 5e-24
 Identities = 58/62 (93%), Positives = 58/62 (93%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M IAFQLAVFALIATSSVLVI   LVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL
Sbjct: 1   MNIAFQLAVFALIATSSVLVIRGHLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ANTFO (P59705) Photosystem II reaction center Z protein|
          Length = 62

 Score =  101 bits (251), Expect = 2e-21
 Identities = 51/62 (82%), Positives = 55/62 (88%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIATS +LVI VP+V ASPDGWS++KN VFSG SLWIGLVFLV ILNS 
Sbjct: 1   MTIAFQLAVFALIATSFLLVIGVPVVLASPDGWSSSKNAVFSGASLWIGLVFLVGILNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_MARPO (P09973) Photosystem II reaction center Z protein|
          Length = 62

 Score =  100 bits (250), Expect = 3e-21
 Identities = 51/62 (82%), Positives = 55/62 (88%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFALIA S +LVI VP+V ASP+GWS+NKNVVFSG SLWIGLVFLV ILNS 
Sbjct: 1   MTIAFQLAVFALIAISFLLVIGVPVVLASPEGWSSNKNVVFSGASLWIGLVFLVGILNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_PSINU (Q8WI21) Photosystem II reaction center Z protein|
          Length = 62

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAF+L+VFALI  S +LVI VP+V ASPDGWS++KN+VFSG SLWIGLVFLV ILNSL
Sbjct: 1   MTIAFELSVFALITISFLLVIGVPVVLASPDGWSSSKNIVFSGASLWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_HUPLU (Q5SD09) Photosystem II reaction center Z protein|
          Length = 62

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 48/62 (77%), Positives = 53/62 (85%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQLAVFA IA   +LVI VP+V ASPDGWS+++NVVFSG S WIGLVFLV ILNSL
Sbjct: 1   MTIAFQLAVFASIAIPFILVIGVPVVLASPDGWSSSRNVVFSGASSWIGLVFLVGILNSL 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_ADICA (Q85FM4) Photosystem II reaction center Z protein|
          Length = 62

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 46/62 (74%), Positives = 52/62 (83%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT AFQ A+FALIATS +LV+ VP+ FASP GWS+NKN+VFSG SLWIGLVFLV I NS 
Sbjct: 1   MTTAFQFALFALIATSFLLVVGVPVAFASPGGWSDNKNIVFSGASLWIGLVFLVGIPNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_CRYJA (Q5IHA3) Photosystem II reaction center Z protein|
          Length = 62

 Score = 93.2 bits (230), Expect = 6e-19
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQ +VFALIA S++LVI VP+  ASP+GWS+NKNV+FSG SLWIG VFLV ILNS 
Sbjct: 1   MTIAFQSSVFALIAISTLLVIGVPVALASPNGWSSNKNVLFSGVSLWIGSVFLVGILNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_CHAGL (Q8M9W6) Photosystem II reaction center Z protein|
          Length = 62

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 43/62 (69%), Positives = 51/62 (82%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M +AFQL+VFAL+A S +LV+ VP+V ASPDGWS +KN VFSG SLWI LVFLV +LNS 
Sbjct: 1   MILAFQLSVFALVAISFLLVVGVPVVLASPDGWSTSKNAVFSGASLWIALVFLVGVLNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_PINTH (P41642) Photosystem II reaction center Z protein|
          Length = 62

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 46/62 (74%), Positives = 50/62 (80%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTIAFQ AVFALIA S +LVI VP+  ASPDGWS++KNVVFSG SLWIG V  V ILNS 
Sbjct: 1   MTIAFQSAVFALIAISFLLVIGVPVALASPDGWSSSKNVVFSGVSLWIGSVLFVGILNSF 60

Query: 121 IS 116
           IS
Sbjct: 61  IS 62

to top

>PSBZ_MESVI (Q9MUP9) Photosystem II reaction center Z protein|
          Length = 62

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 39/61 (63%), Positives = 46/61 (75%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M  AFQL V ALIATS ++VI VP++FASP+GW  +KN VFSG  LWI LVF V ILNS 
Sbjct: 1   MLAAFQLTVLALIATSFLMVIGVPVIFASPEGWVKSKNFVFSGALLWISLVFAVGILNSF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_NEPOL (Q9TKX2) Photosystem II reaction center Z protein|
          Length = 62

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT  FQLA+FAL+A S +LV+ VP+ FA+P+GW+  K  VF G S W  LVF V +LNSL
Sbjct: 1   MTFIFQLALFALVALSFLLVVGVPVAFAAPEGWNVTKGYVFQGVSAWFALVFTVGVLNSL 60

Query: 121 IS 116
           ++
Sbjct: 61  VA 62

to top

>PSBZ_CHLVU (P56313) Photosystem II reaction center Z protein|
          Length = 62

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M + FQLA+FA I  S +LV+ VP+V A+P+GW+ NK+ VFSG  +W  LVFLV ILNS 
Sbjct: 1   MLLIFQLALFAFIVVSFLLVVGVPVVLATPEGWAENKSTVFSGIGIWFLLVFLVGILNSF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_CHLRE (P92276) Photosystem II reaction center Z protein|
          Length = 62

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MT   Q+A+ ALI  S  LV+ VP+VFA+P+GW++NK  VFSG SLW+ LVF+V ILNS 
Sbjct: 1   MTSILQVALLALIFVSFALVVGVPVVFATPNGWTDNKGAVFSGLSLWLLLVFVVGILNSF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_SYNEL (Q8DHJ2) Photosystem II reaction center Z protein|
          Length = 62

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTI FQLA+ AL+  S V+VI VP+ +ASP  W  +K ++F G+ LWI LV +V +LN  
Sbjct: 1   MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_GRATL (Q6B8V1) Photosystem II reaction center Z protein|
          Length = 65

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 27/65 (41%), Positives = 45/65 (69%)
 Frame = -1

Query: 310 IRNMTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAIL 131
           ++ MTI  QL VF L+  S++LV+ +P+ FASP  W  +KN++++G  +W GLV +  ++
Sbjct: 1   MKAMTIIVQLLVFILVIFSTLLVVGIPVTFASPGQWEKSKNLIYTGAGIWTGLVLITGLV 60

Query: 130 NSLIS 116
           NS I+
Sbjct: 61  NSFIN 65

to top

>PSBZ_PORPU (P51316) Photosystem II reaction center Z protein|
          Length = 62

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 28/61 (45%), Positives = 42/61 (68%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M IA QL V  LI  S++LV+ VP+V ASP  W  +K ++++G  LW GLV + +++NSL
Sbjct: 1   MIIAIQLLVLLLITLSTILVVGVPVVLASPGQWEQSKGLIYTGAGLWTGLVIVTSLVNSL 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_CYAPA (P17159) Photosystem II reaction center Z protein|
          Length = 65

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 25/62 (40%), Positives = 45/62 (72%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M IAFQ AVFAL+  S VL+++VP+  ASP  W  ++ ++++G +LW  L+ ++ +L+S+
Sbjct: 1   MLIAFQGAVFALVLLSFVLIVAVPVALASPGEWERSQRLIYAGAALWTSLIIVIGVLDSV 60

Query: 121 IS 116
           ++
Sbjct: 61  VA 62

to top

>PSBZ_ANASP (Q8YQ44) Photosystem II reaction center Z protein|
          Length = 62

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 27/61 (44%), Positives = 41/61 (67%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           MTI FQ A+ AL+  S VLV+ VP+ +A+P  W  +K +++ G+ +WI LV LV +LN  
Sbjct: 1   MTIIFQFALVALVLVSFVLVVGVPVAYATPQNWVESKKLLWLGSGVWIALVLLVGLLNFF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_EUGGR (P32095) Photosystem II reaction center Z protein|
          Length = 65

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = -1

Query: 298 TIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           T  FQ  V ALI  S +LV+++P++FASP GW NNK+ ++     W  LVFL+ IL+ +
Sbjct: 5   TFTFQALVLALIIFSFILVLTLPVIFASPKGWENNKSRIWLACRFWFFLVFLIGILDGI 63

to top

>PSBZ_SYNY3 (P73528) Photosystem II reaction center Z protein|
          Length = 62

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 43/61 (70%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M+I FQ+A+ AL+  S V+V+ VP+ +ASP  W  +K +++ G+ +W  LV +VA+LN L
Sbjct: 1   MSIVFQIALAALVLFSFVMVVGVPVAYASPQNWDRSKPLLYLGSGIWAILVIVVALLNFL 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_CYAME (Q85FY1) Photosystem II reaction center Z protein|
          Length = 62

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 24/62 (38%), Positives = 41/62 (66%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M+I  Q+ V ALI  S VL+++VP+  ++  GWS +K+ + + +  W+G+V L  +LNS 
Sbjct: 1   MSIILQILVVALIVYSFVLIVAVPITLSTASGWSKSKSSIVTASIGWVGMVLLTGVLNSF 60

Query: 121 IS 116
           +S
Sbjct: 61  VS 62

to top

>PSBZ_GUITH (O78503) Photosystem II reaction center Z protein|
          Length = 62

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 34/61 (55%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M    QL V  LI  S  LV+ VP++  SP  W  +KN+V++   LW GLV + A  NS 
Sbjct: 1   MVTILQLLVSILILLSFALVVGVPVILVSPGEWERSKNLVYASAGLWFGLVIVTAAFNSF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_SYNP6 (Q5N0X7) Photosystem II reaction center Z protein|
          Length = 62

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -1

Query: 301 MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 122
           M I FQLA+  L+  S VL++ VP+++A+      +  ++  G   W  LV LV +LN  
Sbjct: 1   MVILFQLALLLLVVMSFVLIVGVPVLYATNGDRVQSNRLILVGGLAWTALVVLVGVLNYF 60

Query: 121 I 119
           +
Sbjct: 61  V 61

to top

>PSBZ_EUGMY (Q8SL91) Photosystem II reaction center Z protein (Fragment)|
          Length = 32

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = -1

Query: 211 DGWSNNKNVVFSGTSLWIGLVFLVAILNSLI 119
           + W NNKN++FSG+ +W+ L+ +V  LN L+
Sbjct: 1   NSWENNKNIIFSGSLIWVFLLIIVGFLNYLV 31

to top

>PSBZ_SKECO (O96798) Photosystem II reaction center Z protein|
          Length = 61

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 268 LIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSLIS 116
           L+  S  LV++VP+  A+P  W ++K+       LW+GLV  +A  + + S
Sbjct: 9   LVLISLALVVTVPVALATPGEWESSKDQFNKAFQLWVGLVVAIATADGISS 59

to top

>PSBZ_EUGAN (Q8SL95) Photosystem II reaction center Z protein (Fragment)|
          Length = 32

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1

Query: 211 DGWSNNKNVVFSGTSLWIGLVFLVAILNSLI 119
           +GW+ NKN +  G++ W GLV LV  LN L+
Sbjct: 1   NGWNENKNYILIGSAAWAGLVLLVGTLNYLV 31

to top

>PSBZ_ODOSI (P49528) Photosystem II reaction center Z protein|
          Length = 61

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -1

Query: 277 VFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSLIS 116
           V  L+  S  LVI+VP+  A+P  W  +K+        W+GLV ++A  + + S
Sbjct: 6   VALLVFISLGLVITVPVALATPGEWEASKSTFTRAFQAWVGLVIVIAAADGISS 59

to top

>PSBZ_EUGGA (Q8SL93) Photosystem II reaction center Z protein (Fragment)|
          Length = 32

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -1

Query: 211 DGWSNNKNVVFSGTSLWIGLVFLVAIL 131
           +GW++NKN V  G + WIGLV LV  L
Sbjct: 1   NGWNDNKNFVLFGAAAWIGLVLLVGTL 27

to top

>PSBZ_EUGST (Q8SL89) Photosystem II reaction center Z protein (Fragment)|
          Length = 32

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 211 DGWSNNKNVVFSGTSLWIGLVFLVAILNSLI 119
           +GW+ NKN +  G   W  LVF+V  LNS +
Sbjct: 1   NGWNENKNFILLGAVTWAILVFIVGSLNSYV 31

to top

>PSBZ_EUGVI (Q8SL87) Photosystem II reaction center Z protein (Fragment)|
          Length = 32

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 211 DGWSNNKNVVFSGTSLWIGLVFLVAILNSLI 119
           +GW++NK  +  G++ W  LV LV  LNS +
Sbjct: 1   NGWNDNKTFILIGSASWAALVLLVGSLNSFV 31

to top

>SCN8A_HUMAN (Q9UQD0) Sodium channel protein type 8 alpha subunit (Sodium|
           channel protein type VIII alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.6)
          Length = 1980

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -1

Query: 334 LYLMVAWR-IRNMTIAFQL-AVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLW 161
           LY++  +  IR + I   + +VF++I   ++L   V + F++P  WS N    F+G   +
Sbjct: 112 LYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTF 171

Query: 160 IGLVFLVA 137
             LV ++A
Sbjct: 172 ESLVKIIA 179

to top

>SCN8A_MOUSE (Q9WTU3) Sodium channel protein type 8 alpha subunit (Sodium|
           channel protein type VIII alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.6)
          Length = 1978

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = -1

Query: 334 LYLMVAWR-IRNMTIAFQL-AVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLW 161
           LY++  +  IR + I   + +VF++I   ++L   V + F++P  WS N    F+G   +
Sbjct: 112 LYILSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTF 171

Query: 160 IGLVFLVA 137
             LV ++A
Sbjct: 172 ESLVKIIA 179

to top

>BCDO1_CHICK (Q9I993) Beta,beta-carotene 15,15'-monooxygenase (EC 1.14.99.36)|
           (Beta-carotene dioxygenase 1)
          Length = 526

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +2

Query: 332 KLTTYLIPHLTKIVKKYKK*EGFNHESIDSSL*LKFIT*PLFYLDMGVRGGYLVFISQAG 511
           K   + IP  + + +K KK   F H  +  S+  + +  P +Y   G+   Y+VFI Q  
Sbjct: 195 KYVLFKIP--SSVPEKEKKKSCFKHLEVVCSIPSRSLLQPSYYHSFGITENYIVFIEQPF 252

Query: 512 IADPVSVYTVY 544
             D V + T Y
Sbjct: 253 KLDIVKLATAY 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,756,178
Number of Sequences: 219361
Number of extensions: 1453519
Number of successful extensions: 3133
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 3096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3133
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result