ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance re... 32 2.0
2UROM_HUMAN (P07911) Uromodulin precursor (Tamm-Horsfall urinary ... 29 10.0
3UROM_PONPY (Q5R5C1) Uromodulin precursor 29 10.0

>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1485

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 28/92 (30%), Positives = 42/92 (45%)
 Frame = -2

Query: 297  FIIQNLCTIAFITVPTCIAALYLILASCPAILVQNQKNTEEVLQPCMWCTLELIVLNACG 118
            FI+     I F+ V    A L++I  + PAI + + +N  EV       TL +IV +   
Sbjct: 863  FILVFCLVIFFVEVAASSAWLWIIKRNAPAINMTSNENVSEVSD-----TLSVIVTHTSF 917

Query: 117  LYLRLIYVPKMNATSFFM*GLHKKLASVVXLV 22
             Y+  IYV    A S    G+ + L  V  L+
Sbjct: 918  YYVFYIYVGV--ADSLLALGIFRGLPLVHSLI 947



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>UROM_HUMAN (P07911) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)|
           (THP)
          Length = 640

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +1

Query: 433 LQICPVAFLHNHVWHLGLCRCVGG---PTRSCLPPLAATVCLDECPA-RTSSE 579
           L +CP  +     WH   C C  G   P   C+P   A VC D C A RT  E
Sbjct: 134 LCVCPAGY-RGDGWH---CECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDE 182



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>UROM_PONPY (Q5R5C1) Uromodulin precursor|
          Length = 641

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +1

Query: 433 LQICPVAFLHNHVWHLGLCRCVGG---PTRSCLPPLAATVCLDECPA-RTSSE 579
           L +CP  +     WH   C C  G   P   C+P   A VC D C A RT  E
Sbjct: 134 LCVCPAGY-RGDGWH---CECSPGSCGPGLDCVPEGDALVCADPCQAHRTLDE 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,776,796
Number of Sequences: 219361
Number of extensions: 1822992
Number of successful extensions: 4313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4312
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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