>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score =  131 bits (329), Expect = 2e-30
 Identities = 76/125 (60%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
 Frame = -1

Query: 498 MHGVGGVMTSPYEMGG---MPMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLV 328
           MH  G +   P   GG   +P  D G + P+ IGALAS L+N+ PE QR MLGE LYPLV
Sbjct: 508 MHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLV 567

Query: 327 DQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLA 148
           +Q+E + AAKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRS          +QLA
Sbjct: 568 EQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSV---AAGGATEQLA 624

Query: 147 SLSLN 133
           SL+L+
Sbjct: 625 SLNLS 629

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 55/92 (59%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
 Frame = -1

Query: 420 PVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLES 241
           P+ I  LAS LA + P+    MLG++LYPLV+Q E   AAKVTGMLLEMDQ E+LHLLES
Sbjct: 572 PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLES 631

Query: 240 PDALKAKVAEAMEVL-RSAQQHTNQSPEQQLA 148
           P+ALKAKV+EA++VL RSA      S + Q A
Sbjct: 632 PEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 47/82 (57%), Positives = 63/82 (76%)
 Frame = -1

Query: 417 VPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESP 238
           +PI  L S+LA++ P  +  MLGE LYPLV++ E    AKVTGMLLEMDQ E+LHL+ESP
Sbjct: 570 LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESP 629

Query: 237 DALKAKVAEAMEVLRSAQQHTN 172
           +ALK+KV+EA++VLR +   T+
Sbjct: 630 EALKSKVSEALDVLRLSVDPTD 651

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 42/85 (49%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS+LA++PP+ Q+ MLGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESP++L +K
Sbjct: 544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSK 603

Query: 219 VAEAMEVLRS--AQQHTNQSPEQQL 151
           V EA+ VL++  A++++ +S +Q L
Sbjct: 604 VEEAVAVLQAHQAKENSQKSAQQSL 628

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 39/82 (47%), Positives = 58/82 (70%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA +PP+ Q+ MLGE +YP++ ++    A K+TGMLLE+D +E+LH+LESP++L +K
Sbjct: 544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSK 603

Query: 219 VAEAMEVLRSAQQHTNQSPEQQ 154
           V EA+ VL++ Q   N     Q
Sbjct: 604 VEEAVAVLQAHQAKENAQKSAQ 625

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 39/87 (44%), Positives = 64/87 (73%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA +PP+ Q+ MLGE L+PL+  +  + A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 556 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 615

Query: 219 VAEAMEVLRSAQQHTNQSPEQQLASLS 139
           V EA+ VL++   H  +   Q++ +++
Sbjct: 616 VDEAVAVLQA--HHAKKEAAQKVGAVA 640

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 38/72 (52%), Positives = 57/72 (79%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA++PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 606

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 607 VDEAVAVLQAHQ 618

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 38/72 (52%), Positives = 57/72 (79%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA++PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 606

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 607 VDEAVAVLQAHQ 618

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 83.2 bits (204), Expect = 6e-16
 Identities = 38/72 (52%), Positives = 57/72 (79%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA++PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 607 VDEAVAVLQAHQ 618

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 83.2 bits (204), Expect = 6e-16
 Identities = 38/72 (52%), Positives = 57/72 (79%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA++PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 607 VDEAVAVLQAHQ 618

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA +PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 604

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 605 VDEAVAVLQAHQ 616

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA +PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+LH+LESP++L++K
Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 604

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 605 VDEAVAVLQAHQ 616

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 57/72 (79%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA++PP+ Q+ MLGE L+PL+  +    A K+TGMLLE+D +E+L++LESP++L++K
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601

Query: 219 VAEAMEVLRSAQ 184
           V EA+ VL++ Q
Sbjct: 602 VDEAVAVLQAHQ 613

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 14/118 (11%)
 Frame = -1

Query: 504 PAMHGVGGVM--TSPYE----MGGMPMRDAGASQPVPIGA--------LASALANSPPET 367
           P     GG    TS Y+    M   P+     +QP+P           +AS LAN+ P+ 
Sbjct: 508 PGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLIASLLANAKPQE 567

Query: 366 QRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLR 193
           Q+ +LGE LYP+++ +  + A K+TGMLLE++ +E+LH++E  +ALKAKV EA+ VL+
Sbjct: 568 QKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 40/86 (46%), Positives = 60/86 (69%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 220
           AS LA +P + Q+ +LGE +YPL+ ++    A K+TGMLLE+D +E+LH+LESP++L +K
Sbjct: 544 ASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSK 603

Query: 219 VAEAMEVLRSAQQHTNQSPEQQLASL 142
           V EA+ VL+ A Q    +P+    SL
Sbjct: 604 VEEAVAVLQ-AHQAKESAPKSAPQSL 628

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 33/61 (54%), Positives = 48/61 (78%)
 Frame = -1

Query: 366 QRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSA 187
           +  +LGE L+PLV++LE   A K+TGMLLEMD++E+L LL+SP+ L  +V EA EVL+S+
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSS 584

Query: 186 Q 184
           +
Sbjct: 585 K 585

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
 Frame = -1

Query: 504 PAMHGVGGVMTSPYEM---GGMPMRDAGASQPVPIGA------LASALANSPPETQRMML 352
           P M+  G V      M   G +P      ++ VP          A+ LA  P E+++ +L
Sbjct: 530 PGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVL 589

Query: 351 GENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTN 172
           GE LYP V   E   + K+TGMLLEM  +E+L LLE   AL  +V EA+ VL   Q+  +
Sbjct: 590 GELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL---QEFVD 646

Query: 171 QSP 163
           Q P
Sbjct: 647 QEP 649

>EDD1_RAT (Q62671) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
           discs protein homolog) (100 kDa protein) (Fragment)
          Length = 920

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 33/83 (39%), Positives = 49/83 (59%)
 Frame = -1

Query: 378 PPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 199
           P    R  LGE LYP V  ++   A+K+TGMLLE+   ++L LL S D+L+A+V EAME+
Sbjct: 511 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMEL 570

Query: 198 LRSAQQHTNQSPEQQLASLSLND 130
           + +   H  ++    +  L L D
Sbjct: 571 IVA---HGRENGADSILDLGLLD 590

>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog) (hHYD) (Progestin-induced protein)
          Length = 2799

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 33/83 (39%), Positives = 49/83 (59%)
 Frame = -1

Query: 378  PPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 199
            P    R  LGE LYP V  ++   A+K+TGMLLE+   ++L LL S D+L+A+V EAME+
Sbjct: 2389 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMEL 2448

Query: 198  LRSAQQHTNQSPEQQLASLSLND 130
            + +   H  ++    +  L L D
Sbjct: 2449 IIA---HGRENGADSILDLGLVD 2468

>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog)
          Length = 2792

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 33/83 (39%), Positives = 49/83 (59%)
 Frame = -1

Query: 378  PPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 199
            P    R  LGE LYP V  ++   A+K+TGMLLE+   ++L LL S D+L+A+V EAME+
Sbjct: 2383 PLPAHRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMEL 2442

Query: 198  LRSAQQHTNQSPEQQLASLSLND 130
            + +   H  ++    +  L L D
Sbjct: 2443 IIA---HGRENGADSILDLGLLD 2462

>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein|
            hyperplastic discs)
          Length = 2885

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 39/67 (58%)
 Frame = -1

Query: 354  LGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHT 175
            +GE LYP +  +    A K+TGMLLE+   ++L ++ S + L+ KV EA+E++   Q+  
Sbjct: 2504 IGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQKSE 2563

Query: 174  NQSPEQQ 154
              +   Q
Sbjct: 2564 TSAQSSQ 2570

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 372 ETQRMMLGENLYPLVDQLEHDQ--AAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 199
           + QR  LGE LY  V     ++  A K+TGM+L++   EV  LLES +  +    EA   
Sbjct: 502 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 561

Query: 198 LRSAQQHTNQSPEQ 157
             S ++   Q  EQ
Sbjct: 562 YESFKKEQEQQTEQ 575

>CYLN2_RAT (O55156) Cytoplasmic linker protein 2 (Cytoplasmic linker protein|
           115) (CLIP-115)
          Length = 1046

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = -1

Query: 393 ALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVA 214
           A  NS P  Q+  +GE L  LV+ ++ +   ++  +  + D    +H  E  + L+ K+ 
Sbjct: 634 ATLNSGPGAQQKEIGE-LKALVEGIKMEHQLELGNLQAKHDLETAMHGKEK-EGLRQKLQ 691

Query: 213 EAMEVLRSAQQHTNQSPEQQLAS 145
           EA E L   QQH     E+Q A+
Sbjct: 692 EAQEELAGLQQHWRAQLEEQAAA 714

>CYLN2_MOUSE (Q9Z0H8) Cytoplasmic linker protein 2 (Cytoplasmic linker protein|
           115) (CLIP-115)
          Length = 1047

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = -1

Query: 393 ALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVA 214
           A  NS P  Q+  +GE L  LV+ ++ +   ++  +  + D    +H  E  + L+ K+ 
Sbjct: 634 ATLNSGPGAQQKEIGE-LKALVEGIKMEHQLELGNLQAKHDLETAMHGKEK-EGLRQKLQ 691

Query: 213 EAMEVLRSAQQHTNQSPEQQ 154
           E  E L   QQH  +  E+Q
Sbjct: 692 EVQEELAGLQQHWREQLEEQ 711

>Y1184_SYNP6 (P08442) Hypothetical protein syc1184_c|
          Length = 417

 Score = 27.3 bits (59), Expect(2) = 0.82
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 535 PLSNWAWHA*SCYAWCWG 482
           P  NW WH  S YA+C G
Sbjct: 48  PGYNWRWHYPSAYAFCTG 65



 Score = 24.3 bits (51), Expect(2) = 0.82
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -1

Query: 399 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPD----A 232
           A  LA +    QR  + + ++    QL     A++ G   +++   VLH LE PD    A
Sbjct: 105 AGTLAVAQERCQRSGVADRIH--FQQLSLYDVAQLPGEFDQINCVGVLHHLEDPDRGLAA 162

Query: 231 LKAKVA 214
           L +K+A
Sbjct: 163 LASKLA 168

>MADS5_ORYSA (Q7GCP2) MADS-box transcription factor 5 (OsMADS5) (FDRMADS2)|
          Length = 225

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
 Frame = -1

Query: 369 TQRMMLGENLYPL----VDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAME 202
           TQR +LGE+L PL    ++QLE+    ++   L+ +  ++   LL+    LK K  +  +
Sbjct: 109 TQRNLLGEDLVPLSLKELEQLEN----QIEISLMNIRSSKNQQLLDQVFELKRKEQQLQD 164

Query: 201 VLRSAQQHTNQSPEQQLASLSLNDGLISS*AKQ--RQFLHH 85
             +  ++   ++  + +  +S  D   S  A +  ++FLHH
Sbjct: 165 ANKDLKRKIQETSGENMLHISCQDVGPSGHASEANQEFLHH 205

>FLHF_TREPA (Q56339) Flagellar biosynthesis protein flhF (Flagella-associated|
           GTP-binding protein)
          Length = 437

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
 Frame = -1

Query: 300 KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTN-----QSPEQQLASLSL 136
           +V+   +E  + E + +LES   + AK+A+ +E L SA +         SPE   A    
Sbjct: 73  RVSAARVEDTEAEKIKILESAQRINAKIAQQVEPLISAAKEKKTEKVPTSPEAVHALTQT 132

Query: 135 NDGLISS--------*AKQRQFLHHIKLI*TENDLVY 49
            +G+I           A++ Q +  I+L+  END  +
Sbjct: 133 LEGMIQKITNSAPVVIAQELQSIQRIELLLEENDFSF 169

>YRAM_ECOLI (P45464) Hypothetical protein yraM|
          Length = 678

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
 Frame = -1

Query: 429 ASQPVPIGALASALA--NSP--PETQRMMLGENLYPL---VDQLEHDQAAKVTGMLLEMD 271
           A+QPVP+ A A++ A  ++P  P  +  +   +  PL   + Q++ D A+ V G LL+ +
Sbjct: 332 AAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNN 391

Query: 270 QTEVLH--------LLESPDALKAKV----------AEAMEVLRSAQQHTNQSPEQQLAS 145
             E+L          L  P+ ++ +V           EA +  R  +    Q+P   +  
Sbjct: 392 VEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPR 451

Query: 144 LSLNDGLISS*AKQRQFL 91
            SL D + ++ A++ Q L
Sbjct: 452 SSLGDRVANAFAQEWQKL 469

>HGT1_CANAL (O74713) High-affinity glucose transporter|
          Length = 545

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -3

Query: 499 YAWCWG------CDDIPI*DGRHAYERCRCVTASSNWGIGFCTCQFTPRDAKNDAWRELV 338
           +A+ WG      C +I   D R A +R   ++ S+NW + F    +TP   KN +W+  +
Sbjct: 405 FAFTWGVGIWVYCAEI-WGDNRVA-QRGNAISTSANWILNFAIAMYTPTGFKNISWKTYI 462

>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 31/124 (25%), Positives = 51/124 (41%)
 Frame = -1

Query: 498  MHGVGGVMTSPYEMGGMPMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLVDQL 319
            +HGVG  M SPY+    P++ A A  P     LA       P  Q   +  N+ P +  +
Sbjct: 1718 VHGVGAEMASPYQ----PLQPASAHLPNLQPTLA-------PINQNAYVPSNIAPAMGAM 1766

Query: 318  EHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLS 139
            +   +A+          +E L+ L    + +AK A A  V    +Q   +  ++Q A  +
Sbjct: 1767 QSAPSAEAVAA-----PSESLN-LNKDRSQQAKQAAAQNVADLVRQEEEKEKQKQKAKKN 1820

Query: 138  LNDG 127
               G
Sbjct: 1821 AESG 1824

>LAMA4_MOUSE (P97927) Laminin alpha-4 chain precursor|
          Length = 1816

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = -1

Query: 345 NLYPLVDQL-EHDQAAKVTGMLLEMDQTEVL----HLLESPDALKAKVAEAMEVLRSAQQ 181
           +L P V+ L E    A   GML+E +  + +    HL+E    ++ K+ E    +    +
Sbjct: 341 SLLPDVEGLHEKGSQASRKGMLVEKESMDTIDQATHLVEQAHNMRDKIQEINSKMLYYGE 400

Query: 180 HTNQSPEQQLASLSLNDGLISS*AKQRQFLHHIKLI*TEND 58
           +    PE+    L L   ++     ++ FL H +L+  E D
Sbjct: 401 NQELGPEEIAEKLVLAQKMLEEIRSRQPFLTHRELVDEEAD 441

>PACC_ASPNG (Q00203) pH-response transcription factor pacC/RIM101|
          Length = 667

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
 Frame = -1

Query: 447 PMRDAGASQP-VPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMD 271
           P  + G+  P +P   +A ++A   P          L  + D   HD   + TG  L+  
Sbjct: 442 PHHEGGSMYPRLPSATMADSMAAGYPTASSTAPPSTLGGIFD---HDDRRRYTGGTLQRA 498

Query: 270 QTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASL 142
           + E   L E  D  +    E     ++ +  +  SPE+  ASL
Sbjct: 499 RPETRQLSEEMDLTQDSKDEGERTPKAKEHSSPSSPERISASL 541

>RADA_MYCTU (P65953) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 480

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = -1

Query: 459 MGGMPMRDAGASQPVPIGALASALANSPPETQRMMLGE 346
           +GGM + +  A   V I ALASA AN P  T  +M+GE
Sbjct: 359 VGGMRLTEPSADLAVAI-ALASAYANLPLPTTAVMIGE 395

>RADA_MYCBO (P65954) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 480

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = -1

Query: 459 MGGMPMRDAGASQPVPIGALASALANSPPETQRMMLGE 346
           +GGM + +  A   V I ALASA AN P  T  +M+GE
Sbjct: 359 VGGMRLTEPSADLAVAI-ALASAYANLPLPTTAVMIGE 395

>ZBT24_MOUSE (Q80X44) Zinc finger and BTB domain-containing protein 24 (Zinc|
           finger protein 450) (Bone morphogenetic protein-induced
           factor 1) (Brain-specific protein 1)
          Length = 710

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 25/104 (24%), Positives = 42/104 (40%)
 Frame = -1

Query: 477 MTSPYEMGGMPMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAK 298
           M  P +   +   ++  S      A  + L   P + Q ++L        +Q EH Q+  
Sbjct: 564 MPGPSQGVSIVAAESPQSMATDPAANITLLTQQPEQLQGLILSAQQ----EQAEHIQSLS 619

Query: 297 VTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQS 166
           V G  +E  QTE +H++           E +E L + Q+ T  S
Sbjct: 620 VIGGQMESSQTEPVHVI-------TLSKETLEHLHAHQEQTTSS 656

>ARGC2_LACPL (O08318) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC|
           1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde
           dehydrogenase 2) (NAGSA dehydrogenase 2)
          Length = 341

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +2

Query: 332 RGYKFSPSIILCVSGGELASAEANAPIGT-----GCDAPASLIGMPPISYGDVITPPTPC 496
           R Y+  P+    ++      A+  AP+ T     GC A A+L+G+ P++   ++ P +  
Sbjct: 111 RWYQRDPASATALAQASYGLADMPAPLSTYIANPGCYATATLLGLAPLAQQQLVEPTSIV 170

Query: 497 I-AGSGM 514
           + A SG+
Sbjct: 171 VDAKSGL 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,538,543
Number of Sequences: 219361
Number of extensions: 1739550
Number of successful extensions: 5539
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 5276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5535
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)