ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYND_CELFI (P54865) Endo-1,4-beta-xylanase D precursor (EC 3.2.1... 33 1.1
2MAUE_PARVE (Q56460) Methylamine utilization protein mauE 30 5.5
3FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Ole... 30 7.2
4CD44_PAPHA (P14745) CD44 antigen precursor (Phagocytic glycoprot... 30 7.2
5PCE_TACTR (P21902) Proclotting enzyme precursor (EC 3.4.21.86) [... 30 7.2
6IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185) 30 7.2
7IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1) 30 7.2
8AROB_BUCAI (P57604) 3-dehydroquinate synthase (EC 4.2.3.4) 30 9.4

>XYND_CELFI (P54865) Endo-1,4-beta-xylanase D precursor (EC 3.2.1.8) (Xylanase|
           D) (XYLD)
          Length = 644

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
 Frame = -1

Query: 470 WSS-INTRLARDGGSPW*IERT-TGKKATRAMDSTVE*GSSKTRTKSP--SGSSYGQQIP 303
           WS   N   +  G S W +     G +  +A  +    GS  TRT +P  SG+++G  + 
Sbjct: 259 WSDRFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVM 318

Query: 302 WNNGIIQPLLTPQSSWLIGMPSIDPTRTPTISHTLRSSCTQG 177
            N     P  T   S   G  +  PT TPT + T   SC+ G
Sbjct: 319 KNGSSTTPAATCAGS---GGGTATPTPTPTPTPT-PQSCSAG 356



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>MAUE_PARVE (Q56460) Methylamine utilization protein mauE|
          Length = 186

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 235 LIPPVLPPSATPSVQVVHRDRTRGGKFWWLDTAVNLLSGKIKADCGCFTSSVYNR 71
           +IP +  P+A  +  ++       G F  L  AVN+L G+ + DCGCF + +  R
Sbjct: 70  MIPALAAPAALAAAALL-------GVFG-LAIAVNVLRGRTQIDCGCFRNGMKQR 116



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>FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide|
           hydrolase) (Anandamide amidohydrolase)
          Length = 579

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 331 LGDFVLVLELP--YSTVESIALVAFFPVVLSIYQGLPPSRARRVLIELQH 474
           LGD VLVL+LP  +  + S  L   FP + +    + P  A + L ELQH
Sbjct: 401 LGDLVLVLKLPRWFKKLLSFLLKPLFPRLAAFLNSMCPRSAEK-LWELQH 449



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>CD44_PAPHA (P14745) CD44 antigen precursor (Phagocytic glycoprotein I) (PGP-1)|
           (HUTCH-I) (Extracellular matrix receptor-III) (ECMR-III)
           (GP90 lymphocyte homing/adhesion receptor) (Hermes
           antigen) (Hyaluronate receptor)
          Length = 362

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -1

Query: 440 DGGSPW*IERTTGKKATRAMDSTVE*GSSKTRTKSPS-GSSYGQQIPWNNGIIQPLLTPQ 264
           D   PW  + T    ATR   +    G S T   S S G S+G +    N    PL TPQ
Sbjct: 207 DEDGPWITDSTDRTPATRDQGAFDPSGGSHTTHGSESAGHSHGSREGGANTTSGPLRTPQ 266

Query: 263 -SSWLIGMPSI 234
              WLI + S+
Sbjct: 267 IPEWLIILASL 277



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>PCE_TACTR (P21902) Proclotting enzyme precursor (EC 3.4.21.86) [Contains:|
           Proclotting enzyme light chain; Proclotting enzyme heavy
           chain]
          Length = 375

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 373 VESIALVAFFPVVLSIYQGLPPSRARRVLIELQHHDVCNNIPTQESVCSEI 525
           V ++  +  FP+++S+ +    SR RR  +     ++C+N  T+E  C  +
Sbjct: 3   VNNVFSLLCFPLLMSVVRCSTLSRQRRQFVFPDEEELCSNRFTEEGTCKNV 53



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>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)|
          Length = 1235

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 359 SSKTRTKSPSGSSYGQQIPWNNGI 288
           SS + + +PSGSSYG+  PW NG+
Sbjct: 677 SSSSISAAPSGSSYGK--PWTNGV 698



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>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)|
          Length = 1233

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 359 SSKTRTKSPSGSSYGQQIPWNNGI 288
           SS + + +PSGSSYG+  PW NG+
Sbjct: 677 SSSSISAAPSGSSYGK--PWTNGV 698



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>AROB_BUCAI (P57604) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 363

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 145 DTAVNLLSGKIKADCGCFTSSVYNRSLRFFLPAVVVLEQKD 23
           DT +  L G +  D   F +SVY R +RF      +L Q D
Sbjct: 99  DTTLIALGGGVIGDLAGFAASVYQRGVRFIQIPTTLLSQVD 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,962,957
Number of Sequences: 219361
Number of extensions: 2262561
Number of successful extensions: 5746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5746
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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