ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa857... 119 1e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
5dbj|AK069448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
6dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
7dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
8dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
9emb|BX664715.25| Zebrafish DNA sequence from clone DKEY-83M2 in ... 44 0.62
10gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 2.4
11gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
12ref|XM_456588.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 2.4
13gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 42 2.4
14gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence 42 2.4
15gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome... 42 2.4
16gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome... 42 2.4
17emb|AL441943.6| Human DNA sequence from clone RP11-69C17 on chro... 42 2.4
18emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 42 2.4
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
20gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome... 42 2.4
21gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 42 2.4
22gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Canc... 42 2.4
23gb|AC155157.1| Medicago truncatula chromosome 2 BAC clone mth2-5... 40 9.7
24gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complet... 40 9.7
25gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete... 40 9.7
26emb|CT010458.8| Mouse DNA sequence from clone RP23-279C9 on chro... 40 9.7
27gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, co... 40 9.7
28gb|AC122449.4| Mus musculus BAC clone RP24-247O14 from chromosom... 40 9.7
29gb|AC117251.3| Mus musculus BAC clone RP24-372C12 from chromosom... 40 9.7
30gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, R... 40 9.7
31gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, comple... 40 9.7
32gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, co... 40 9.7
33gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, compl... 40 9.7
34emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 ... 40 9.7
35emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chr... 40 9.7
36gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, com... 40 9.7
37dbj|AK156741.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 9.7
38gb|AC154364.2| Mus musculus BAC clone RP24-559G11 from chromosom... 40 9.7
39emb|BX649608.7| Zebrafish DNA sequence from clone CH211-117L17 i... 40 9.7
40gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, com... 40 9.7
41gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Canc... 40 9.7
42gb|AC154752.2| Mus musculus BAC clone RP24-402K18 from 16, compl... 40 9.7
43gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 ... 40 9.7
44gb|AC131655.4| Mus musculus BAC clone RP23-233G16 from 8, comple... 40 9.7
45emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chrom... 40 9.7 
>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA
          Length = 1248

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                        
Query: 308  tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
            ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 1235 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 1176

                                                                        
Query: 368  ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
            ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 1175 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 1116

                                                        
Query: 428  gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
            | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 1115 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 1072
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                            
Query: 308      tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
                ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 10006322 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 10006263

                                                                            
Query: 368      ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
                ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 10006262 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 10006203

                                                            
Query: 428      gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
                | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 10006202 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 10006159



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 7        atgtaatttatatttgatctttctgctctagaactacaaca 47
                |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 10006671 atgtaatttacatttgatctttctgctctacagctacaaca 10006631
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1085F09
          Length = 132713

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                         
Query: 308   tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
             ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 86604 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 86545

                                                                         
Query: 368   ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
             ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 86544 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 86485

                                                         
Query: 428   gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
             | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 86484 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 86441



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 7     atgtaatttatatttgatctttctgctctagaactacaaca 47
             |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 86953 atgtaatttacatttgatctttctgctctacagctacaaca 86913
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0003H10
          Length = 142418

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                          
Query: 308    tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
              ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 142088 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 142029

                                                                          
Query: 368    ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
              ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 142028 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 141969

                                                          
Query: 428    gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
              | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 141968 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 141925
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>dbj|AK069448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020G14, full
           insert sequence
          Length = 890

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                       
Query: 308 tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
           ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 471 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 412

                                                                       
Query: 368 ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
           ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 411 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 352

                                                       
Query: 428 gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
           | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 351 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 308



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 7   atgtaatttatatttgatctttctgctctagaactacaaca 47
           |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 820 atgtaatttacatttgatctttctgctctacagctacaaca 780
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>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full
            insert sequence
          Length = 2351

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                        
Query: 308  tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
            ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 1953 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 1894

                                                                        
Query: 368  ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
            ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 1893 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 1834

                                                        
Query: 428  gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
            | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 1833 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 1790



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 7    atgtaatttatatttgatctttctgctctagaactacaaca 47
            |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 2302 atgtaatttacatttgatctttctgctctacagctacaaca 2262
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                         
Query: 308   tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
             ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 33879 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 33820

                                                                         
Query: 368   ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
             ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 33819 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 33760

                                                         
Query: 428   gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
             | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 33759 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 33716



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 7     atgtaatttatatttgatctttctgctctagaactacaaca 47
             |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 34228 atgtaatttacatttgatctttctgctctacagctacaaca 34188
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                          
Query: 308    tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 367
              ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 100815 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 100756

                                                                          
Query: 368    ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 427
              ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 100755 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 100696

                                                          
Query: 428    gactgcctccatctcgagccaggcgtgtattgattgaactccag 471
              | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 100695 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 100652



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 7      atgtaatttatatttgatctttctgctctagaactacaaca 47
              |||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 101164 atgtaatttacatttgatctttctgctctacagctacaaca 101124
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>emb|BX664715.25| Zebrafish DNA sequence from clone DKEY-83M2 in linkage group 6,
             complete sequence
          Length = 231173

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     ttttatgtaatttatatttgat 24
             ||||||||||||||||||||||
Sbjct: 69163 ttttatgtaatttatatttgat 69142
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 392    ttgccttcttccctgtggtcctttc 416
              ||||||||||||||||| |||||||
Sbjct: 667517 ttgccttcttccctgtgctcctttc 667493
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>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017K09, complete sequence
          Length = 155525

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     atgtaatttatatttgatctt 27
             |||||||||||||||||||||
Sbjct: 81946 atgtaatttatatttgatctt 81966
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>ref|XM_456588.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A06138g)
            partial mRNA
          Length = 2949

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 260  ttgattgaggagtcaataacg 280
            |||||||||||||||||||||
Sbjct: 2521 ttgattgaggagtcaataacg 2501
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>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      aattttatgtaatttatattt 21
              |||||||||||||||||||||
Sbjct: 108158 aattttatgtaatttatattt 108178
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>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence
          Length = 117818

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 392   ttgccttcttccctgtggtcctttc 416
             ||||||||||||||||| |||||||
Sbjct: 89879 ttgccttcttccctgtgctcctttc 89855
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>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence
          Length = 260989

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     ggcaaaaagaaacgcaaactg 71
              |||||||||||||||||||||
Sbjct: 254154 ggcaaaaagaaacgcaaactg 254134
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>gb|AC121830.3| Mus musculus BAC clone RP24-63N24 from chromosome 7, complete sequence
          Length = 211478

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    ggcaaaaagaaacgcaaactg 71
             |||||||||||||||||||||
Sbjct: 54661 ggcaaaaagaaacgcaaactg 54641
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>emb|AL441943.6| Human DNA sequence from clone RP11-69C17 on chromosome 10 Contains four
              novel genes (FLJ40155) (FLJ31539), complete sequence
          Length = 203234

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 494    tacccacacaagagtctgtat 514
              |||||||||||||||||||||
Sbjct: 155659 tacccacacaagagtctgtat 155679
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 260    ttgattgaggagtcaataacg 280
              |||||||||||||||||||||
Sbjct: 497272 ttgattgaggagtcaataacg 497252
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 7        atgtaatttatatttgatctt 27
                |||||||||||||||||||||
Sbjct: 24567764 atgtaatttatatttgatctt 24567784
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>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete
            sequence
          Length = 237233

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 574  atagtcatcgcagagtaactgctaa 598
            |||||||||||||| ||||||||||
Sbjct: 1190 atagtcatcgcagaataactgctaa 1214
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>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 574   atagtcatcgcagagtaactgctaa 598
             |||||||||||||| ||||||||||
Sbjct: 36704 atagtcatcgcagaataactgctaa 36680
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>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203488

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      aattttatgtaatttatattt 21
              |||||||||||||||||||||
Sbjct: 184318 aattttatgtaatttatattt 184298
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>gb|AC155157.1| Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete
             sequence
          Length = 129201

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     aattttatgtaatttatatttgat 24
             ||||||||||||||||||| ||||
Sbjct: 68769 aattttatgtaatttatatatgat 68746
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>gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complete sequence
          Length = 159479

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    ctttcgatttaccagggact 431
              ||||||||||||||||||||
Sbjct: 130010 ctttcgatttaccagggact 129991
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>gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete sequence
          Length = 151500

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   ctttcgatttaccagggact 431
             ||||||||||||||||||||
Sbjct: 42424 ctttcgatttaccagggact 42405
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>emb|CT010458.8| Mouse DNA sequence from clone RP23-279C9 on chromosome 13, complete
              sequence
          Length = 240541

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 652    atttttctgagacaactcaacatt 675
              ||||||||||||||||| ||||||
Sbjct: 114297 atttttctgagacaactaaacatt 114320
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>gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, complete sequence
          Length = 210962

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     aattttatgtaatttatatttgat 24
             |||| |||||||||||||||||||
Sbjct: 19768 aattatatgtaatttatatttgat 19791
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>gb|AC122449.4| Mus musculus BAC clone RP24-247O14 from chromosome 9, complete sequence
          Length = 155620

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   tgttcagagatccacttcca 533
             ||||||||||||||||||||
Sbjct: 76932 tgttcagagatccacttcca 76913
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>gb|AC117251.3| Mus musculus BAC clone RP24-372C12 from chromosome 8, complete sequence
          Length = 191927

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 614    ttgacctcagaattccacatgaatttgg 641
              ||||||||||||| | ||||||||||||
Sbjct: 183911 ttgacctcagaatcctacatgaatttgg 183938
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>gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-137N6, complete
             sequence
          Length = 231589

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   ttatatgctatcaatagtca 580
             ||||||||||||||||||||
Sbjct: 54030 ttatatgctatcaatagtca 54049
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>gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, complete sequence
          Length = 168872

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   gagggtgtggctgatggtgg 217
             ||||||||||||||||||||
Sbjct: 65760 gagggtgtggctgatggtgg 65779
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>gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, complete sequence
          Length = 146442

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     atttatatttgatctttctg 31
              ||||||||||||||||||||
Sbjct: 115050 atttatatttgatctttctg 115069
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>gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, complete sequence
          Length = 173759

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  gagggtgtggctgatggtgg 217
            ||||||||||||||||||||
Sbjct: 4967 gagggtgtggctgatggtgg 4986
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>emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 in linkage group 17,
              complete sequence
          Length = 145947

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      attttatgtaatttatattt 21
              ||||||||||||||||||||
Sbjct: 109161 attttatgtaatttatattt 109180
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>emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chromosome 4, complete
              sequence
          Length = 178426

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      attttatgtaatttatattt 21
              ||||||||||||||||||||
Sbjct: 173973 attttatgtaatttatattt 173992
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>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence
          Length = 219013

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttatgtaatttatattt 21
              ||||||||||||||||||||
Sbjct: 183899 attttatgtaatttatattt 183880
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>dbj|AK156741.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830047B02 product:unclassifiable, full
            insert sequence
          Length = 4885

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    gtaatttatatttgatcttt 28
            ||||||||||||||||||||
Sbjct: 4466 gtaatttatatttgatcttt 4447
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>gb|AC154364.2| Mus musculus BAC clone RP24-559G11 from chromosome 13, complete
             sequence
          Length = 133661

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 652   atttttctgagacaactcaacatt 675
             ||||||||||||||||| ||||||
Sbjct: 91829 atttttctgagacaactaaacatt 91806
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>emb|BX649608.7| Zebrafish DNA sequence from clone CH211-117L17 in linkage group 18,
              complete sequence
          Length = 169649

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttatgtaatttatattt 21
              ||||||||||||||||||||
Sbjct: 143174 attttatgtaatttatattt 143155
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>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttatgtaatttatattt 21
              ||||||||||||||||||||
Sbjct: 101324 attttatgtaatttatattt 101305
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>gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166071

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ggcaaaaagaaacgcaaact 70
              ||||||||||||||||||||
Sbjct: 126200 ggcaaaaagaaacgcaaact 126219
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>gb|AC154752.2| Mus musculus BAC clone RP24-402K18 from 16, complete sequence
          Length = 174112

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      aattttatgtaatttatatttgat 24
              |||| |||||||||||||||||||
Sbjct: 164146 aattatatgtaatttatatttgat 164169
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>gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 of 118 of the complete
             sequence
          Length = 299749

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   ctttcgatttaccagggact 431
             ||||||||||||||||||||
Sbjct: 35328 ctttcgatttaccagggact 35309
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>gb|AC131655.4| Mus musculus BAC clone RP23-233G16 from 8, complete sequence
          Length = 190990

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 614  ttgacctcagaattccacatgaatttgg 641
            ||||||||||||| | ||||||||||||
Sbjct: 1256 ttgacctcagaatcctacatgaatttgg 1283
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>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete
              sequence
          Length = 246587

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      gtaatttatatttgatcttt 28
              ||||||||||||||||||||
Sbjct: 194064 gtaatttatatttgatcttt 194045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,354,564
Number of Sequences: 3902068
Number of extensions: 6354564
Number of successful extensions: 119789
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119580
Number of HSP's gapped (non-prelim): 201
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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