ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1l06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SERR_DROME (P18168) Serrate protein precursor (Protein beaded) 30 1.1
2CVRA_PSEAE (Q9HUE8) Cell volume regulation protein A homolog 28 4.1
3MDM4_HUMAN (O15151) Mdm4 protein (p53-binding protein Mdm4) (Mdm... 27 9.1

>SERR_DROME (P18168) Serrate protein precursor (Protein beaded)|
          Length = 1404

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 131  LTCDHTNCSKYFPAS*AVN*EGACSLFQTMAAASQ*IHQSTMSSPICCRMHGEQPFMSRY 310
            L C   NC K  P S + N  G C   +    A   + ++ +SSP  C + G+   +   
Sbjct: 1008 LWCGLPNCYKVDPLSKSSNLSGVCKQHEVCVPA---LSETCLSSP--CNVRGDCRALEPS 1062

Query: 311  NQFDPPYLSAK 343
             +  PP L AK
Sbjct: 1063 RRVAPPRLPAK 1073



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>CVRA_PSEAE (Q9HUE8) Cell volume regulation protein A homolog|
          Length = 580

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 52  EMFMYHLSYKLNLKWCIASELRKL 123
           E+F+YHL+ +   KWCI + LR+L
Sbjct: 415 ELFVYHLNKE---KWCIGAALREL 435



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>MDM4_HUMAN (O15151) Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like|
           p53-binding protein) (Mdmx protein) (Double minute 4
           protein)
          Length = 490

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 118 FSTQRQCTISNSACRI 71
           FST  QC+ S+SACRI
Sbjct: 4   FSTSAQCSTSDSACRI 19


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,620,323
Number of Sequences: 219361
Number of extensions: 892881
Number of successful extensions: 1749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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