ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-as... 32 1.4
2FA40B_MOUSE (Q8C9H6) Protein FAM40B 31 4.1
3HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72) 30 9.1
4GPR20_HUMAN (Q99678) Probable G-protein coupled receptor 20 30 9.1

>KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-associated|
           protein 15.1)
          Length = 136

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +3

Query: 114 PCQSHYTSALKSGNIGQTKGKYIYMSTSVQVTDASKYCHHRQNRCSPTMTSS 269
           PCQ+ YT +L SGNIG   G +   ST  Q            N CSPT  SS
Sbjct: 85  PCQTIYTGSLGSGNIG--LGSFGCGSTGFQSLGCG------SNFCSPTYVSS 128



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>FA40B_MOUSE (Q8C9H6) Protein FAM40B|
          Length = 844

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 645 NPKGQSGGGTADGKSQGSPAKGRVAYKDGKQFYPNESSES 526
           +P   +G G  +G   G+  KG+ A   G++ + N+  ES
Sbjct: 12  SPANDNGNGNGNGNGNGNGGKGKPAVPKGRETFRNQRRES 51



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>HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72)|
          Length = 644

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 504 HYGGRDFYDSSPHKQANESSRNYKEDNTDGSLATR 400
           H GG DF +   +  ANE  R YK+D T    A R
Sbjct: 226 HLGGEDFDNRLVNHFANEFKRKYKKDLTTNQRALR 260



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>GPR20_HUMAN (Q99678) Probable G-protein coupled receptor 20|
          Length = 358

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 595 KPC*RSCCLQRWKTILPKRVLRVALFWFVCALRRPGLL*Q 476
           +PC R   L   + +LP  V+ V     +CAL RPGLL Q
Sbjct: 192 RPCCRVFALTVLEFLLPLLVISVFTGRIMCALSRPGLLHQ 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,442,357
Number of Sequences: 219361
Number of extensions: 2328866
Number of successful extensions: 6834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6824
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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