ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger prot... 103 6e-22
2Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2... 101 2e-21
3Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2... 100 4e-21
4ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing ... 100 6e-21
5ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing ... 96 7e-20
6ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing ... 94 3e-19
7ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expr... 49 1e-05
8ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog 47 4e-05
9ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expres... 47 4e-05
10ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expr... 47 4e-05
11ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B 36 0.11
12ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B 34 0.32
13ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B 32 1.6
14NORQ_PARDE (Q51664) Protein norQ 32 2.1
15SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 30 4.6
16SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (A... 30 4.6
17HM14_CAEEL (P20271) Homeobox protein ceh-14 30 6.0
18CO9_MOUSE (P06683) Complement component C9 precursor 30 6.0
19ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1... 30 7.9
20YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC 30 7.9
21VG40_ICHV1 (Q00145) Hypothetical gene 40 protein 30 7.9
22DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Digl... 30 7.9

>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1|
           (Stress-associated protein 1) (OsISAP1)
          Length = 164

 Score =  103 bits (256), Expect = 6e-22
 Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
 Frame = -3

Query: 600 PAADVAGTSEAVAVSPKRKEGP-NRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQF 424
           P  +   ++ A A +P  K    NRCS CRKRVGLTGF CRCG+++C  HRYSD+H C +
Sbjct: 80  PPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSY 139

Query: 423 DYRTAARDAIAKANPVVKAEKL 358
           DY++AARDAIA+ NPVV+A K+
Sbjct: 140 DYKSAARDAIARDNPVVRAAKI 161



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>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger|
           protein 216)
          Length = 213

 Score =  101 bits (252), Expect = 2e-21
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
 Frame = -3

Query: 612 LVVQPAADVA--GTSEAVAVSPKR-KEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSD 442
           +V QP+  V+   TS++   +P+  K   NRC  CRK+VGLTGF+CRCGN++C LHRYSD
Sbjct: 123 VVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSD 182

Query: 441 KHDCQFDYRTAARDAIAKANPVVKAEKLDKI 349
           KH+C +DY+  A   I K NPVV AEK+ +I
Sbjct: 183 KHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213



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>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger|
           protein 216)
          Length = 213

 Score =  100 bits (249), Expect = 4e-21
 Identities = 49/93 (52%), Positives = 62/93 (66%), Gaps = 5/93 (5%)
 Frame = -3

Query: 612 LVVQPAADVAGTS-----EAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRY 448
           +V QP+  V+  S     E     PK K+  NRC  CRK+VGLTGF+CRCGN++C LHRY
Sbjct: 123 VVTQPSPSVSQPSSSQSEEKAPELPKPKK--NRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180

Query: 447 SDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 349
           SDKH+C +DY+  A   I K NPVV AEK+ +I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213



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>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein|
           At1g12440
          Length = 168

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 43/78 (55%), Positives = 57/78 (73%)
 Frame = -3

Query: 582 GTSEAVAVSPKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAAR 403
           G S A  + P  K    RC +C K+VG+TGF CRCG+ +C  HRY + H+CQFD++  AR
Sbjct: 92  GDSAAAPLDPP-KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAR 150

Query: 402 DAIAKANPVVKAEKLDKI 349
           +AIAKANPVVKA+K+D+I
Sbjct: 151 EAIAKANPVVKADKVDRI 168



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>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein|
           At2g36320
          Length = 161

 Score = 96.3 bits (238), Expect = 7e-20
 Identities = 41/69 (59%), Positives = 50/69 (72%)
 Frame = -3

Query: 555 PKRKEGPNRCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPV 376
           P   + PNRC+ CRKRVGLTGF CRCG  +C  HRY + H C FD+++A R+ IAKANP+
Sbjct: 93  PSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPL 152

Query: 375 VKAEKLDKI 349
           V A KL KI
Sbjct: 153 VIAAKLQKI 161



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>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein|
           At4g12040
          Length = 175

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
 Frame = -3

Query: 612 LVVQPAADVAGTSEAVAVSPKRKEGPN-RCSTCRKRVGLTGFNCRCGNMYCSLHRYSDKH 436
           +V    + V   +E     P R   PN RC +C K+VG+ GF C+CG+ +C  HRY +KH
Sbjct: 87  VVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKH 146

Query: 435 DCQFDYRTAARDAIAKANPVVKAEKLDKI 349
           +C FD++   RDAIAKANP+VKA+K+ +I
Sbjct: 147 ECSFDFKEVGRDAIAKANPLVKADKVQRI 175



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>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -3

Query: 579 TSEAVAVSPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTA 409
           T  +   S  +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+   
Sbjct: 140 TERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR 199

Query: 408 ARDAIAKANPVVKAEKLDK 352
            R+       ++K  KLD+
Sbjct: 200 GRE-----EAIMKMVKLDR 213



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>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog|
          Length = 226

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -3

Query: 558 SPKRKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 388
           S  +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+    
Sbjct: 146 SRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE---- 201

Query: 387 ANPVVKAEKLDK 352
              ++K  KLD+
Sbjct: 202 -EAIMKMVKLDR 212



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>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -3

Query: 549 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 379
           +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+       
Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204

Query: 378 VVKAEKLDK 352
           ++K  KLD+
Sbjct: 205 IMKMVKLDR 213



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>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence|
           27)
          Length = 227

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -3

Query: 549 RKEGPNRCSTCRKRVGLTGF---NCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANP 379
           +++   RC  C+ ++ L      +CRCG ++C LHR  ++HDC FD+    R+       
Sbjct: 150 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGRE-----EA 204

Query: 378 VVKAEKLDK 352
           ++K  KLD+
Sbjct: 205 IMKMVKLDR 213



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>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 552 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 391
           KRK   N+C  S CR+R  +     RCG  +C  HR+   HDC  +    +R  +A
Sbjct: 92  KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147



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>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 552 KRKEGPNRC--STCRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 391
           KRK   N+C  S CR+R  +     RCG  +C  HR+   H+C  +    +R  +A
Sbjct: 92  KRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHECSGEGHQTSRAGLA 147



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>ZFN2B_HUMAN (Q8WV99) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 552 KRKEGPNRCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIA 391
           KRK   N+C    CR+R  +     RC   +C  HR+   HDC  +    +R  +A
Sbjct: 92  KRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGEGHPTSRAGLA 147



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>NORQ_PARDE (Q51664) Protein norQ|
          Length = 270

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 361 ARQDLGVL-QGRNGCNLPRFIIHLCCAILAPPFLVGCH 251
           A  DL VL +G  GC   RF+ H+   +  P + V CH
Sbjct: 32  AANDLPVLLKGPTGCGKTRFVAHMAARLGRPLYTVACH 69



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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -3

Query: 615 ALVVQPAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVG-LTGFNCRCGNMYCSLHRYSDK 439
           AL+VQP A    + E + V    + GP RCS C+  V     F  +     C+L  Y+D+
Sbjct: 405 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 464

Query: 438 ----HDCQFDYRTAARDA 397
               + C        RDA
Sbjct: 465 TPRDYQCNLGPDGRRRDA 482



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>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
            helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
            (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -3

Query: 600  PAADVAGTSEAVAVSPKRKEGPNRCSTCRKRVGLT--GFNCR-CGNMYCSLHRYSDKHDC 430
            PA D+    +  A+     +  N C   +   G+T  G  C+ C   YC  H   + H C
Sbjct: 873  PATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGC 932

Query: 429  QFDYRTAARDAIAK 388
                R  AR  I++
Sbjct: 933  GERARAHARQRISR 946



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>HM14_CAEEL (P20271) Homeobox protein ceh-14|
          Length = 351

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 531 RCSTCRKRVGLTGFNCRCGNMYCSLHRY 448
           RCSTC+  +G T F  R  +MYC  H Y
Sbjct: 74  RCSTCKDELGATCF-LREDSMYCRAHFY 100



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>CO9_MOUSE (P06683) Complement component C9 precursor|
          Length = 548

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 531 RCST--CRKRVGLTGFNCRCGNMYCSLHRYSDKHDCQFDYRTAARDAIAK 388
           +C T  C KR  L   +  CG+       YSD++DC  D RT  RD +A+
Sbjct: 104 QCETGRCIKRRLLCNGDNDCGD-------YSDENDCDDDPRTPCRDRVAE 146



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>ALG2_CANGA (Q6FJJ9) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)|
           (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol
           mannosyltransferase) (Asparagine-linked glycosylation
           protein 2)
          Length = 458

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 483 RCGNMYCSLHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI--*VSYREEMVAICQ 310
           +C N Y S++RY  K + +   +  A+ ++   N VV      +I   V Y +E+  +C+
Sbjct: 215 KCPNFYLSINRYERKKNIELAIQAFAKASVENTNLVVCGGYDPRIHENVQYLQELTCLCK 274



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>YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC|
          Length = 261

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
 Frame = -3

Query: 366 EKLDKI*VSYREEMVAICQGSSSIFAVPSLHLPFLLAATFPKLYGIVM--HTASWQLQEL 193
           EKL  +   YR  +V I     S  +V   HLPFL+ A    + G++   H + W +  L
Sbjct: 5   EKLQSL-AKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLV--L 61

Query: 192 NPLSHSEWFACCV------------TLFMVVFSVSIVASH 109
             LS+    A  +             +F ++F ++I++S+
Sbjct: 62  FILSNLPMLATTIFAYQHHFTTLDTVIFFIIFLLTIISSY 101



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>VG40_ICHV1 (Q00145) Hypothetical gene 40 protein|
          Length = 136

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 365 RSSTRFRCPTGKKWLQSAKVHHPSLLCHPCTSLSCWLPHFLNCTAS*CTLRRGS 204
           RS++ F C    + L   ++  PS+    CT+ SCW  H L  +++   +RR S
Sbjct: 26  RSNSWFVCKIVYRCLSPRRIISPSI----CTAFSCWANHGLRLSST-AAMRRSS 74



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>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase|
           1) (DGK 1) (DAG kinase 1)
          Length = 1020

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -3

Query: 531 RCSTCRKRV----GLTGFNCR-CGNMYCSLHRYSDKHDC 430
           RCS CRKR+    G+TG  CR C  M  +    S K +C
Sbjct: 269 RCSKCRKRIKAYHGITGLTCRWCHMMLHNRCASSVKKEC 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,680,253
Number of Sequences: 219361
Number of extensions: 1977819
Number of successful extensions: 6048
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6047
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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