>TOF1_YEAST (P53840) Topoisomerase 1-associated factor 1|
          Length = 1238

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
 Frame = -2

Query: 512 SEYAGWTLVNGYALNHATVSTHRLESDIRSISKFNKFVENNGFKLSTEGGILKVSPDGLL 333
           S+Y+   + +   L H+ +      SD +++    K      F +S EG I K+  +  +
Sbjct: 581 SKYSLQFMKSCIELTHSVLKVLEQYSDDKTLVIEGKSRRQKKFNIS-EGDITKLIEEENV 639

Query: 332 QQSST--VADSSLFTF--------ADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKE 189
            +     +  SSL +         A+ +TEP+  +YI F ER     FR+L+D+ +K+
Sbjct: 640 DRDEALDILTSSLRSIEVNFQKVQANYMTEPVIETYINFLER-----FRELEDDSIKK 692

>PTG3C_MYCGE (P47315) PTS system glucose-specific EIICBA component (EIICBA-Glc)|
           (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC
           component (PTS system glucose-specific EIIC component);
           Glucose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.6
          Length = 908

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
 Frame = -2

Query: 656 VTLSRQEIIRKYIKTSANGNKYAVLASTFGELT---WEKPTYSDFQVLSRESEYAGWTLV 486
           + L++  I+ K +  S +G  Y +   TF   T   W    ++   +    S       V
Sbjct: 372 IGLNQSGILGKKVLLS-DGKDYTITFKTFANTTPTFWSHGAHALLPISGTPSAITNGVTV 430

Query: 485 NG------YALNHATVSTHRLESDIRSISKFNKFVENNGFKLSTEG-GILKVSPDGLLQQ 327
           NG      Y ++  TV+   L     S  KF   +      +   G  ++  +P G  ++
Sbjct: 431 NGTANSKTYNVSQFTVAVPSLNPAQYSQGKFPFML----IGIPAAGLAMILAAPKGRRKE 486

Query: 326 SSTVADSSLFT-FADGITEPIPRSYIEFA 243
           +S++  S+ FT F  GITEP   +++  A
Sbjct: 487 ASSIIGSAAFTSFLTGITEPFEFTFLFLA 515

>SYI_CAMJE (P41257) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 917

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
 Frame = -2

Query: 524 LSRESEYAGW---TLVNGYALNHATVSTHRLESDIRSISKFNKFVENNGFKLSTEGGILK 354
           L    ++ GW   +L+ G A+N +      L     +  K  K  ++ G  +++E  + K
Sbjct: 568 LEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIASEY-VAK 626

Query: 353 VSPDGLLQQSSTVAD-SSLFTFADGITEPIPRSY--IEFAERLPLPQFRDLQDEEVKEHH 183
                +L+    ++D SS    +D I + +   Y  I    R  L    DL+D EVKE  
Sbjct: 627 TYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEVKEFS 686

Query: 182 RRDGFEVGNADKIFESTSK 126
             D + +  A K+F+++ +
Sbjct: 687 FIDKWILSRATKVFKASKE 705

>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase|
           regulatory subunit 5) (PI3-kinase p101 subunit)
           (PtdIns-3-kinase p101) (p101-PI3K)
           (Phosphatidylinositol-4,5-bisphosphate 3-kinase
           regulatory subunit) (PtdIns-3-kinase regulato
          Length = 877

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -2

Query: 320 TVADSSLFTFADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKEHHRRDGFEVGNADKIF 141
           T++   L +F  G+++ +   Y+E  E     + R     E +  HRR G +     K+F
Sbjct: 368 TLSRQLLTSFVSGLSDGVDSGYMEDIEESAYERPRRPGGHE-RRGHRRPGQKFNRIYKLF 426

Query: 140 ESTSKDQLTRRS 105
           +STS+  L R S
Sbjct: 427 KSTSQMVLRRDS 438

>VPS15_PICPA (Q9UVG6) Putative serine/threonine-protein kinase VPS15 (EC 2.7.11.1)|
            (Vacuolar protein sorting protein 15)
          Length = 1339

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 485  NGYALNHATVSTHRLESDIRSISKFNKFVEN-NGFKLSTEGGILKVSPDGLLQQSSTV 315
            NGYA +H TVS   + S ++ I    KF+EN N F   T  G +K+    +   SS+V
Sbjct: 976  NGYATSHVTVS---MSSSVKDI----KFIENRNSFCAVTADGEIKIFRVEINSTSSSV 1026

>SRD2_CAEEL (Q21767) Serpentine receptor class delta-2 (Protein srd-2)|
          Length = 347

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +1

Query: 484 LTRVHPAYSLSLDRTWKSE*V------GFSHVSSPNVLARTAYLFPLADVLMYFR 630
           LTRVHP Y    +  WK   V       F+ ++  ++L  T    P+   ++YFR
Sbjct: 176 LTRVHPEYHYDDESIWKKSIVVSGNISAFAPITLISILYMTIPCVPIYCAILYFR 230

>SYNPO_RAT (Q9Z327) Synaptopodin|
          Length = 931

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = -2

Query: 461 TVSTHRLESDIRSISKFNKFVENNGFKLS-TEGGILKVSPDGLLQQSSTVADS--SLFTF 291
           T+ST  + S +RS   ++    ++  K    +G ++  +  G+L++S     S  S+FTF
Sbjct: 557 TLSTAPVASQVRSPPSYSTLYPSSDPKPPHLKGQVVPANKTGILEESMARRGSRKSMFTF 616

Query: 290 ADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKEHHRRDGFEVGNADKIF 141
                       +E  +  P P   DL     ++  +RD  EVG  D+ F
Sbjct: 617 ------------VEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGMEDEPF 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,027,218
Number of Sequences: 219361
Number of extensions: 1925447
Number of successful extensions: 4813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4809
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)