ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1k23 |
|---|---|
| Clone Library Name | barley_pub |
>AOX4_ARATH (Q56X52) Alternative oxidase 4, chloroplast precursor (EC 1.-.-.-)| (Protein IMMUTANS) (Plastid terminal oxidase) Length = 351 Score = 244 bits (624), Expect = 1e-64 Identities = 112/157 (71%), Positives = 130/157 (82%) Frame = -2 Query: 675 ESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVERHA 496 ES NE HHLLIME LGGNS W DRFLA+ A FYYF+TV +Y+LSPRMAYHFSECVE HA Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230 Query: 495 YSTYDKFLKLNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYDVFV 316 Y TYDKFLK +GEELK +PAP++AV YY DLY+FDEFQTSR PN+RRP ++NLYDVFV Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFV 290 Query: 315 NVRDDEAEHCKTMKACQTHETLRSPHSVQSSVEADTE 205 N+RDDEAEHCKTM+ACQT +LRSPHS+ + + E Sbjct: 291 NIRDDEAEHCKTMRACQTLGSLRSPHSILEDDDTEEE 327
>AOX1_MANIN (Q40294) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 318 Score = 55.5 bits (132), Expect = 2e-07 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ M L W +R L ++ +Y+LSP++A+ +E Sbjct: 180 LEEAENERMHLMTMVELV-QPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEE 238 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y ++LK ++ +K +PAP +A++Y+ R PK L D Sbjct: 239 EAIHSYTEYLKDIDSGAIKNIPAPAIAIDYW-------------------RLPKDATLKD 279 Query: 324 VFVNVRDDEAEH 289 V VR DEA H Sbjct: 280 VITVVRADEAHH 291
>AOX1_TOBAC (Q41224) Alternative oxidase 1, mitochondrial precursor (EC| 1.-.-.-) Length = 353 Score = 55.5 bits (132), Expect = 2e-07 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Frame = -2 Query: 681 LPESMNEFHHLL-IMEALGGNSVWIDR---FLARFSAFFYYFVTVAMYMLSPRMAYHFSE 514 L E+ NE HL+ ME N W +R F + F YFVT Y+LSP++A+ Sbjct: 215 LDEAENERMHLMTFMEVAKPN--WYERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVG 269 Query: 513 CVERHAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVD 337 +E A +Y +FLK L+ ++ +PAP +A++Y R PK Sbjct: 270 YLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDY-------------------CRLPKDS 310 Query: 336 NLYDVFVNVRDDEAEH 289 L DV + VR DEA H Sbjct: 311 TLLDVVLVVRADEAHH 326
>AOX2_TOBAC (Q40578) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 297 Score = 53.9 bits (128), Expect = 4e-07 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Frame = -2 Query: 681 LPESMNEFHHLL-IMEALGGNSVWIDR---FLARFSAFFYYFVTVAMYMLSPRMAYHFSE 514 L E+ NE HL+ ME N W +R F + YFVT Y+LSP++A+ Sbjct: 159 LEEAENERMHLMTFMEVAKPN--WYERALVFAVQGVFINAYFVT---YLLSPKLAHRIVG 213 Query: 513 CVERHAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVD 337 +E A +Y +FLK L+ ++ +PAP +A++Y+ R PK Sbjct: 214 YLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYW-------------------RLPKDS 254 Query: 336 NLYDVFVNVRDDEAEH 289 L DV + VR DEA H Sbjct: 255 TLRDVVLVVRADEAHH 270
>AOX2_SOYBN (Q41266) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 333 Score = 53.9 bits (128), Expect = 4e-07 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ M L W +R L ++ +Y+LSP++A+ +E Sbjct: 195 LEEAENERMHLMTMVELV-KPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEE 253 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y ++LK L ++ +PAP +A++Y+ R PK L D Sbjct: 254 EAIHSYTEYLKDLESGAIENVPAPAIAIDYW-------------------RLPKDARLKD 294 Query: 324 VFVNVRDDEAEH 289 V +R DEA H Sbjct: 295 VITVIRADEAHH 306
>AOX2_ARATH (O22049) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 353 Score = 52.0 bits (123), Expect = 2e-06 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ M L W +R L ++ Y++SPR+A+ +E Sbjct: 215 LEEAENERMHLMTMMELV-KPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEE 273 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y +FLK ++ +++ + AP +A++Y+ R PK L D Sbjct: 274 EAIHSYTEFLKDIDNGKIENVAAPAIAIDYW-------------------RLPKDATLKD 314 Query: 324 VFVNVRDDEAEH 289 V +R DEA H Sbjct: 315 VVTVIRADEAHH 326
>AOX3_SOYBN (O03376) Alternative oxidase 3, mitochondrial precursor (EC| 1.-.-.-) Length = 326 Score = 51.2 bits (121), Expect = 3e-06 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ M L S W +R L + ++ Y+LSP+ A+ F +E Sbjct: 188 LEEAENERMHLMTMVELVKPS-WHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEE 246 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y + L + +++ +PAP +A++Y+ R PK L D Sbjct: 247 EAVISYTQHLNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKD 287 Query: 324 VFVNVRDDEAEH 289 V +R DEA H Sbjct: 288 VVTVIRADEAHH 299
>AOX3_ARATH (Q8LEE7) Alternative oxidase 3, mitochondrial precursor (EC| 1.-.-.-) Length = 318 Score = 49.7 bits (117), Expect = 8e-06 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ L W +R + ++ Y++SP++A+ + +E Sbjct: 180 LEEAENERMHLMTFIELS-QPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEE 238 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A ++Y +FLK ++ + + PAP +A++Y+ R PK L D Sbjct: 239 EAVNSYTEFLKDIDAGKFENSPAPAIAIDYW-------------------RLPKDATLRD 279 Query: 324 VFVNVRDDEAEH 289 V +R DEA H Sbjct: 280 VVYVIRADEAHH 291
>AOX1A_ARATH (Q39219) Alternative oxidase 1a, mitochondrial precursor (EC| 1.-.-.-) Length = 354 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ + W +R L ++ Y++SP+ A+ +E Sbjct: 216 LEEAENERMHLMTFMEVA-KPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEE 274 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y +FLK L+ ++ +PAP +A++Y+ R P L D Sbjct: 275 EAIHSYTEFLKELDKGNIENVPAPAIAIDYW-------------------RLPADATLRD 315 Query: 324 VFVNVRDDEAEH 289 V + VR DEA H Sbjct: 316 VVMVVRADEAHH 327
>AOX1_SOYBN (Q07185) Alternative oxidase 1, mitochondrial precursor (EC| 1.-.-.-) Length = 321 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ + W +R L ++ Y+LSP+ A+ +E Sbjct: 183 LEEAENERMHLMTFMEVA-KPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEE 241 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y +FLK L+ ++ +PAP +A++Y+ + P L D Sbjct: 242 EAIHSYTEFLKELDKGNIENVPAPAIAIDYW-------------------QLPPGSTLRD 282 Query: 324 VFVNVRDDEAEH 289 V + VR DEA H Sbjct: 283 VVMVVRADEAHH 294
>AOX1B_ARATH (O23913) Alternative oxidase 1b, mitochondrial precursor (EC| 1.-.-.-) Length = 325 Score = 46.6 bits (109), Expect = 7e-05 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 2/133 (1%) Frame = -2 Query: 681 LPESMNEFHHLL-IMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVE 505 L E+ NE HL+ ME N W +R L ++ Y++SP+ A+ +E Sbjct: 187 LEEAENERMHLMTFMEVAKPN--WYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLE 244 Query: 504 RHAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLY 328 A +Y +FLK L+ ++ +PAP +A++Y+ R L Sbjct: 245 EEAIHSYTEFLKELDNGNIENVPAPAIAIDYW-------------------RLEADATLR 285 Query: 327 DVFVNVRDDEAEH 289 DV + VR DEA H Sbjct: 286 DVVMVVRADEAHH 298
>AOX1_SAUGU (P22185) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 349 Score = 46.2 bits (108), Expect = 9e-05 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ + W +R L ++ Y+LSP+ A+ +E Sbjct: 211 LEEAENERMHLMTFMEVA-QPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEE 269 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y +FLK ++ ++ PAP +A++Y+ R P+ L D Sbjct: 270 EAIHSYTEFLKDIDSGAIQDCPAPAIALDYW-------------------RLPQGSTLRD 310 Query: 324 VFVNVRDDEAEH 289 V VR DEA H Sbjct: 311 VVTVVRADEAHH 322
>AOX_HANAN (Q00912) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 342 Score = 46.2 bits (108), Expect = 9e-05 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HLL +G N W RF+ + + +Y++ PR + F +E Sbjct: 175 LDEAYNERMHLLTFIKIG-NPSWFTRFIIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEE 233 Query: 501 HAYSTYDKFLK-LNGEELKK---LPAPEVAVNYY--MNEDLYMFDEFQTSRAPNSRRPKV 340 A STY +K ++ + L K + PE++ Y+ +NE D Q RA S+ +V Sbjct: 234 EAVSTYTHLIKDIDSKRLPKFDDVNLPEISWLYWTDLNEKSTFRDLIQRIRADESKHREV 293 Query: 339 DN 334 ++ Sbjct: 294 NH 295
>AOX1C_ARATH (O22048) Alternative oxidase 1c, mitochondrial precursor (EC| 1.-.-.-) Length = 329 Score = 45.4 bits (106), Expect = 2e-04 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HL+ + W +R L ++ + Y++SP+ A+ +E Sbjct: 191 LEEAENERMHLMTFMEVA-KPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEE 249 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A +Y +FLK L+ ++ +PAP +AV+Y+ R L D Sbjct: 250 EAIHSYTEFLKELDNGNIENVPAPAIAVDYW-------------------RLEADATLRD 290 Query: 324 VFVNVRDDEAEH 289 V + VR DEA H Sbjct: 291 VVMVVRADEAHH 302
>AOX_VENIN (Q9P429) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 361 Score = 45.1 bits (105), Expect = 2e-04 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L ES NE HLLI L W R + ++ Y++SPR + F +E Sbjct: 197 LEESYNERMHLLIFLKLYEPG-WFMRLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEE 255 Query: 501 HAYSTYDKFLKLNGEELKKLP------APEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKV 340 A TY + +L E KLP AP++AV+YY P R Sbjct: 256 EAVVTYTR--ELADLEAGKLPEWETLAAPDIAVDYY--------------NLPEGHR--- 296 Query: 339 DNLYDVFVNVRDDEAEH 289 + D+ ++VR DEA+H Sbjct: 297 -TMKDLLLHVRADEAKH 312
>AOX2_CANAL (Q9UV71) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 365 Score = 42.7 bits (99), Expect = 0.001 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 9/140 (6%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HLL +G S W R + + V +Y+L+PR + F +E Sbjct: 199 LDEAYNERMHLLTFIKIGKPS-WFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEE 257 Query: 501 HAYSTYDKFLKLNGEELK---KLPA------PEVAVNYYMNEDLYMFDEFQTSRAPNSRR 349 A TY L +EL KLPA PEVAV Y+ P S Sbjct: 258 EAVRTYSHLL----DELAVPGKLPAFETMKIPEVAVQYW------------PELTPKS-- 299 Query: 348 PKVDNLYDVFVNVRDDEAEH 289 + D+ + +R DEA+H Sbjct: 300 ----SFKDLILRIRADEAKH 315
>AOX_YARLI (Q8J0I8) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 353 Score = 37.4 bits (85), Expect = 0.043 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 5/136 (3%) Frame = -2 Query: 675 ESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVERHA 496 E+ NE HLL L SV + L FY ++ Y++SP + F +E A Sbjct: 192 EAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFYNLFFIS-YLISPATCHRFVGYLEEEA 250 Query: 495 YSTYDKFLKLNGE----ELKKLPAPEVAVNYY-MNEDLYMFDEFQTSRAPNSRRPKVDNL 331 TY + L+ EL + P++A Y+ M +D M D Q RA Sbjct: 251 VITYTRCLEDIDAGRLPELASMEVPDIARTYWHMEDDCTMRDLIQYVRA----------- 299 Query: 330 YDVFVNVRDDEAEHCK 283 DEA+HC+ Sbjct: 300 ---------DEAKHCE 306
>AOX_BLUGR (Q8X1N9) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 358 Score = 34.7 bits (78), Expect = 0.28 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Frame = -2 Query: 681 LPESMNEFHHLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVER 502 L E+ NE HLL + W +F+ + ++ Y++SPR + F +E Sbjct: 192 LEEAYNERMHLLTFLKMAKPG-WFMKFMIIGAQGVFFNSMFLSYLISPRTCHRFVAYLEE 250 Query: 501 HAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRRPKVDNLYD 325 A TY ++ + L K +PE + DL + Q + P R + D Sbjct: 251 EAVLTYSTAIQDIEAGLLPKWTSPEFRI-----PDLAV----QYWKIPEGNR----TMRD 297 Query: 324 VFVNVRDDEAEH 289 + + +R DEA+H Sbjct: 298 LLLYIRADEAKH 309
>VP62_MRDV (P22120) Probable nonstructural 36.3 kDa protein| Length = 309 Score = 30.4 bits (67), Expect = 5.2 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 13/55 (23%) Frame = +1 Query: 274 LHRLAMLRLI---------ISYIDKYIIQVINFRPPRIWSS*C----LKLIKHVE 399 +H A LR++ S+I ++++ V+N P +W+S C L LI+HVE Sbjct: 96 IHNFADLRIVENENEFEFVSSHITRHLLIVLNSNPNILWTSTCLLAKLSLIQHVE 150
>YO048_YEAST (Q08219) Protein YOL048C| Length = 342 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -3 Query: 617 YGLIAFLRGLVPFFTTLSLSPCTC*AQEWHTTFL 516 +G+ A L L+PFFT +++S T A +W T+ L Sbjct: 302 FGMSAGLLELIPFFTIVTISSNTVGAAKWCTSLL 335
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 333 LYDVFVNVRDDEAEH-CKTMKACQTHETLRSPHSVQSSVEADT 208 L++ V R EA + C+T A T TL +P S+ SSV ++T Sbjct: 364 LWEEAVKARKKEAANLCQTSTAATTPVTLTTPFSITSSVSSET 406
>TM11D_MOUSE (Q8VHK8) Transmembrane protease, serine 11D precursor (EC 3.4.21.-)| (Airway trypsin-like protease) (AT) (Adrenal secretory serine protease) (AsP) [Contains: Transmembrane protease, serine 11D non-catalytic chain; Transmembrane protease, serin Length = 417 Score = 30.0 bits (66), Expect = 6.9 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Frame = -2 Query: 606 RFLARFSAFFYYFVTVAMYMLSPRMAYHFSECVERHAYSTYDKFLKLNGEELKKLPAPEV 427 RF F+ F +TV + + + HF ++ AY + F LN E + L +P Sbjct: 12 RFFTPFAVAFVVIITVGLLAMMAGLLIHFL-AFDKKAYFYHSSFQILNVEYTEALNSPAT 70 Query: 426 AVNYYMNE--DLYMFDEFQTSRAPNS---------RRPKVDNLYDVFVNVRDDEAEHCKT 280 ++E + + DEF+ S + R+ + DV + R + + K Sbjct: 71 HEYRTLSERIEAMITDEFRGSSLKSEFIRTHVVKLRKEGTGVVADVVMKFRSSKRNNRKV 130 Query: 279 MK 274 MK Sbjct: 131 MK 132
>ERCC2_MOUSE (O08811) TFIIH basal transcription factor complex helicase subunit| (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2) Length = 760 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 642 MEALGGNSVWIDRFLARFSAFFYYFVTVAM-YMLSPRMAYHFSECVERHAYSTYDK 478 ++ALG W FLAR+S V + Y+L P++A S+ + R A +D+ Sbjct: 180 LKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDE 235
>ERCC2_HUMAN (P18074) TFIIH basal transcription factor complex helicase subunit| (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2) Length = 760 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 642 MEALGGNSVWIDRFLARFSAFFYYFVTVAM-YMLSPRMAYHFSECVERHAYSTYDK 478 ++ALG W FLAR+S V + Y+L P++A S+ + R A +D+ Sbjct: 180 LKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDE 235
>ERCC2_CRIGR (Q60452) TFIIH basal transcription factor complex helicase subunit| (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2) Length = 760 Score = 29.6 bits (65), Expect = 9.0 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 642 MEALGGNSVWIDRFLARFSAFFYYFVTVAM-YMLSPRMAYHFSECVERHAYSTYDK 478 ++ALG W FLAR+S V + Y+L P++A S+ + R A +D+ Sbjct: 180 LKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDE 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,918,965 Number of Sequences: 219361 Number of extensions: 1660659 Number of successful extensions: 3753 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3659 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3752 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
