ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1k18 |
|---|---|
| Clone Library Name | barley_pub |
>OXAA_STRAW (P59811) Membrane protein oxaA| Length = 428 Score = 34.7 bits (78), Expect = 0.24 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -1 Query: 498 KRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVERSVPAAKKRGVGRPPKSGQKRA 319 KR S R+SGS + GESE K + + + PAAK G P +G + Sbjct: 354 KRQSKSQRQSGSAKAAGESEPKSTPLSLSKSDEP---DDAKPAAKPAGGANKPSTGTRSK 410 Query: 318 ATAPPQDSPSKGRKRTRR 265 A + + P + + +++ Sbjct: 411 AQSGQRKGPQRPKSPSKK 428
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 33.1 bits (74), Expect = 0.69 Identities = 25/88 (28%), Positives = 37/88 (42%) Frame = -1 Query: 507 RDAKRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVERSVPAAKKRGVGRPPKSGQ 328 RD +RS+ SR S + S+ S K ++ RS K R R PK Sbjct: 221 RDRRRSR--SRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVD 278 Query: 327 KRAATAPPQDSPSKGRKRTRR*QGEATP 244 + + +PP+ S S K + R A+P Sbjct: 279 R--SPSPPRGSRSPSEKGSPRRSRSASP 304
>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2| subunit) (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) Length = 1191 Score = 32.0 bits (71), Expect = 1.5 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 16/73 (21%) Frame = -3 Query: 574 RGR*CPCNQENFSNIAAGTSCAS*CKEKQGFLKGERKHCQPG*E--------RDQGR--- 428 R R PCN + +++AG + C+ K G CQPG RDQG+ Sbjct: 78 RDRCLPCNCHSKGSLSAGCDNSGQCRCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQLDS 137 Query: 427 -----PRGCSGNC 404 P G SG C Sbjct: 138 KCDCDPAGISGPC 150
>TOP2A_CRIGR (P41515) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 31.2 bits (69), Expect = 2.6 Identities = 24/93 (25%), Positives = 38/93 (40%) Frame = -1 Query: 528 PPVRHVPRDAKRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVERSVPAAKKRGVG 349 PP +P D ++ K SS++ TV+ ++ TK S KKR V Sbjct: 1389 PPAADLPADTEQLKPSSKQ---TVAVKKTATKSQSST------------STAGTKKRAVP 1433 Query: 348 RPPKSGQKRAATAPPQDSPSKGRKRTRR*QGEA 250 + KS A P + P+K + +R Q + Sbjct: 1434 KGSKSDSALNAHGPEKPVPAKAKNSRKRKQSSS 1466
>ARMX1_PONPY (Q5R4B2) Armadillo repeat-containing X-linked protein 1| Length = 453 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 396 KTVERSVPAAKKRGVG-RPPKSGQKRAATAPPQDSPSKGRKRTRR*QGEATPWICRRVVY 220 +T+ S+P RG G P +SG + A SKG+ R++ + AT W RR + Sbjct: 136 RTLAPSLPCPGGRGGGCHPTRSGSRAGGRA---SGKSKGKARSKSTRAPATTWPVRRGKF 192 Query: 219 N 217 N Sbjct: 193 N 193
>ARMX1_HUMAN (Q9P291) Armadillo repeat-containing X-linked protein 1 (Protein| ALEX1) (ARM protein lost in epithelial cancers on chromosome X 1) Length = 453 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 396 KTVERSVPAAKKRGVG-RPPKSGQKRAATAPPQDSPSKGRKRTRR*QGEATPWICRRVVY 220 +T+ S+P RG G P +SG + A SKG+ R++ + AT W RR + Sbjct: 136 RTLAPSLPCPGGRGGGCHPTRSGSRAGGRA---SGKSKGKARSKSTRAPATTWPVRRGKF 192 Query: 219 N 217 N Sbjct: 193 N 193
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 11/47 (23%) Frame = -1 Query: 387 ERSVPAAKKRGVG---------RPP--KSGQKRAATAPPQDSPSKGR 280 E +V K+RG G RPP +G KRAAT PP DS GR Sbjct: 497 EAAVRPRKRRGSGQENPSPQSTRPPLAPAGAKRAATHPPSDSGPGGR 543
>ZN408_HUMAN (Q9H9D4) Zinc finger protein 408 (PR-domain zinc finger protein 17)| Length = 720 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 384 SQRFFHQQLPLHPRGRPWSRSHPG*QCFRSPLRKPCFSLHHEAHDVPAA 530 +QR + +H RP++ QC ++ R+P LH + H VPAA Sbjct: 420 TQRDLKEHQVVHSGARPFACD----QCGKAFARRPSLRLHRKTHQVPAA 464
>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s| chain) Length = 1798 Score = 30.4 bits (67), Expect = 4.5 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 13/86 (15%) Frame = -3 Query: 625 EDCCKGCK*PSKQEGGGRGR*CPCNQENFSNIAAGTSCAS-------*CKEKQGFLKGER 467 E C G + GG+ R CPC + S TSC C + G+ Sbjct: 906 ERCIAGFHRDPRLPYGGQCRPCPCPEGPGSQRHFATSCHQDEYSQQIVCHCRAGYTGLRC 965 Query: 466 KHCQPG*ERDQGRPRG------CSGN 407 + C PG D RP G CSGN Sbjct: 966 EACAPGHFGDPSRPGGRCQLCECSGN 991
>KR2_PRVN3 (P30662) Serine/threonine-protein kinase 2 (EC 2.7.11.1)| Length = 398 Score = 29.6 bits (65), Expect = 7.6 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = -2 Query: 356 GSGGLQRAGKSAPPLRRRKT----VLAKAGRGLDGDREKRRRGYADVLCTILQGGPRVAP 189 G GG+ RA + PP+ R + +A AG DGD R G A PR AP Sbjct: 6 GGGGVSRAALARPPIHRGTSAPGGAIAAAGGDGDGDEASRLLGRAQ---------PREAP 56
>IF2_STRMU (Q8DVP9) Translation initiation factor IF-2| Length = 916 Score = 29.6 bits (65), Expect = 7.6 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Frame = -1 Query: 516 HVPRDAKRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVER-SVPAA---KKRGVG 349 H ++AKR ++E ++Q E T +TVE+ + PAA +++ Sbjct: 205 HEAQEAKRQAAQAKEKAKKLNQKEQPTVEAAATAAPQAQPQTVEQVTHPAAVDTRRKKQA 264 Query: 348 RPPKSGQKRAATAPPQDSPSKGRKRTRR 265 RP KS R + +D P + + + R Sbjct: 265 RPDKS---RDFSHENEDGPKQNKHKKNR 289
>PRTP_EHV1V (Q6S6N9) Probable processing and transport protein| Length = 766 Score = 29.3 bits (64), Expect = 10.0 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%) Frame = +3 Query: 24 HIYSA*QLGITSLQPKLRFI*LTLNKTPGKPPLLPVTKHPDSLCLVFDRVVHNTGWSYSR 203 H+ + + G+ +L+ RF+ T+ PP L HP S+C V N G + R Sbjct: 151 HLITGFEAGLDALESVARFLTRTVGSGIVVPPELCDPTHPCSVCFEELCVTANQGEAVHR 210 Query: 204 TSL*DCTQHVCISTASLLPVTVESSSCLC*DCLAAAQWRRAFA----RSLEAAR 353 L +CT ++ ++ + L L+ A RRA A R+LEA R Sbjct: 211 RLL-ECTCDHITRQMAVRVANIDIARHLP-HALSVASERRAAAEAALRALEARR 262
>PRTP_EHV1B (Q6DLH9) Probable processing and transport protein| Length = 766 Score = 29.3 bits (64), Expect = 10.0 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%) Frame = +3 Query: 24 HIYSA*QLGITSLQPKLRFI*LTLNKTPGKPPLLPVTKHPDSLCLVFDRVVHNTGWSYSR 203 H+ + + G+ +L+ RF+ T+ PP L HP S+C V N G + R Sbjct: 151 HLITGFEAGLDALESVARFLTRTVGSGIVVPPELCDPTHPCSVCFEELCVTANQGEAVHR 210 Query: 204 TSL*DCTQHVCISTASLLPVTVESSSCLC*DCLAAAQWRRAFA----RSLEAAR 353 L +CT ++ ++ + L L+ A RRA A R+LEA R Sbjct: 211 RLL-ECTCDHITRQMAVRVANIDIARHLP-HALSVASERRAAAEAALRALEARR 262
>PRTP_EHV1 (P68351) Probable processing and transport protein| Length = 766 Score = 29.3 bits (64), Expect = 10.0 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%) Frame = +3 Query: 24 HIYSA*QLGITSLQPKLRFI*LTLNKTPGKPPLLPVTKHPDSLCLVFDRVVHNTGWSYSR 203 H+ + + G+ +L+ RF+ T+ PP L HP S+C V N G + R Sbjct: 151 HLITGFEAGLDALESVARFLTRTVGSGIVVPPELCDPTHPCSVCFEELCVTANQGEAVHR 210 Query: 204 TSL*DCTQHVCISTASLLPVTVESSSCLC*DCLAAAQWRRAFA----RSLEAAR 353 L +CT ++ ++ + L L+ A RRA A R+LEA R Sbjct: 211 RLL-ECTCDHITRQMAVRVANIDIARHLP-HALSVASERRAAAEAALRALEARR 262
>VE2_HPV25 (P36787) Regulatory protein E2| Length = 502 Score = 29.3 bits (64), Expect = 10.0 Identities = 22/84 (26%), Positives = 33/84 (39%) Frame = -1 Query: 519 RHVPRDAKRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVERSVPAAKKRGVGRPP 340 R R RS+ SR + S+ SE++ KT A + RG G P Sbjct: 268 RSKSRSRSRSQSRSRIRSRSRSRSRSESQSSKRRSRSRSRRKT-----SATRGRGPGSPT 322 Query: 339 KSGQKRAATAPPQDSPSKGRKRTR 268 + RAA +P S + ++ R Sbjct: 323 TTTSDRAARSPSTTSSATSQRSQR 346
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 29.3 bits (64), Expect = 10.0 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Frame = -1 Query: 519 RHVPRDAKRSKVSSRESGSTVSQGESETKXXXXXXXXXXDEKTVERS-VPAAKKRGVGRP 343 RH R +R S R T + S ++ + RS V +++R R Sbjct: 81 RHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRS 140 Query: 342 P--KSGQKRAATAPPQDSPSKGRKRTR 268 P K KR A+ P+K R RTR Sbjct: 141 PSPKRDLKREASRSRSPLPAKDRSRTR 167
>CABL2_MOUSE (Q8K3M5) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)| (Ik3-2) Length = 481 Score = 29.3 bits (64), Expect = 10.0 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -2 Query: 386 REACQPPRSEGSGGLQRAGKSAPPLRRRKTVLAKAGRGLDGDREKRR 246 REA PP + GGL P A AG GLDG R++RR Sbjct: 81 REAPAPPPAP-PGGLPGLPARPAPQGLLSPTTAPAGLGLDGQRQRRR 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,045,559 Number of Sequences: 219361 Number of extensions: 1882784 Number of successful extensions: 5354 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5339 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
