ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1k18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478737.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AK101955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6gb|AC008167.5| Homo sapiens BAC clone RP11-172O13 from 7, comple... 44 0.55
7gb|AC158148.5| Mus musculus chromosome 1, clone RP24-353B6, comp... 40 8.5
8gb|BC072818.1| Xenopus laevis MGC80162 protein, mRNA (cDNA clone... 40 8.5
9ref|XM_367168.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.5
10gb|BC027601.1| Homo sapiens polycystic kidney disease (polycysti... 40 8.5
11emb|AL139108.17| Human DNA sequence from clone RP4-759O7 on chro... 40 8.5
12emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in ... 40 8.5
13gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom... 40 8.5
14gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Can... 40 8.5
15emb|AJ329258.1|HSA329258 Homo sapiens genomic sequence surroundi... 40 8.5
16emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.5
17gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, com... 40 8.5
18emb|CT030654.8| Mouse DNA sequence from clone RP23-332G16 on chr... 40 8.5 
>ref|XM_478737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1855

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 445  ctcaccctggctgacagtgcttccgctctcccttgaggaaaccttgcttctctttgcatc 504
            |||||||||  ||||||| |||||  || || || | ||||| |||||||||||||||||
Sbjct: 1443 ctcaccctgcttgacagtacttccagtcccctttaaagaaactttgcttctctttgcatc 1384

                          
Query: 505  acgaggcacatgac 518
            | ||||| ||||||
Sbjct: 1383 atgaggcccatgac 1370



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 266  cgtcgagtcctcttcctgcctttgctaggactgtcttgc 304
            ||||| |||||||||||||||||| |||| || ||||||
Sbjct: 1607 cgtcgggtcctcttcctgcctttgttagggctatcttgc 1569



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 323  cgcttttgcccgctctttggaggccgcccgacccctcgcttcttggc 369
            ||||| |||||  |||||||||||||||| || |||| |||||||||
Sbjct: 1556 cgcttctgcccattctttggaggccgcccaacgcctctcttcttggc 1510
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                            
Query: 445      ctcaccctggctgacagtgcttccgctctcccttgaggaaaccttgcttctctttgcatc 504
                |||||||||  ||||||| |||||  || || || | ||||| |||||||||||||||||
Sbjct: 22612941 ctcaccctgcttgacagtacttccagtcccctttaaagaaactttgcttctctttgcatc 22613000

                              
Query: 505      acgaggcacatgac 518
                | ||||| ||||||
Sbjct: 22613001 atgaggcccatgac 22613014



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 323      cgcttttgcccgctctttggaggccgcccgacccctcgcttcttggc 369
                ||||| |||||  |||||||||||||||| || |||| |||||||||
Sbjct: 22612828 cgcttctgcccattctttggaggccgcccaacgcctctcttcttggc 22612874



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 266      cgtcgagtcctcttcctgcctttgctaggactgtcttgc 304
                ||||| |||||||||||||||||| |||| || ||||||
Sbjct: 22612777 cgtcgggtcctcttcctgcctttgttagggctatcttgc 22612815
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>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1773_H01
          Length = 146543

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                         
Query: 445   ctcaccctggctgacagtgcttccgctctcccttgaggaaaccttgcttctctttgcatc 504
             |||||||||  ||||||| |||||  || || || | ||||| |||||||||||||||||
Sbjct: 30839 ctcaccctgcttgacagtacttccagtcccctttaaagaaactttgcttctctttgcatc 30898

                           
Query: 505   acgaggcacatgac 518
             | ||||| ||||||
Sbjct: 30899 atgaggcccatgac 30912



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 323   cgcttttgcccgctctttggaggccgcccgacccctcgcttcttggc 369
             ||||| |||||  |||||||||||||||| || |||| |||||||||
Sbjct: 30726 cgcttctgcccattctttggaggccgcccaacgcctctcttcttggc 30772



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 266   cgtcgagtcctcttcctgcctttgctaggactgtcttgc 304
             ||||| |||||||||||||||||| |||| || ||||||
Sbjct: 30675 cgtcgggtcctcttcctgcctttgttagggctatcttgc 30713
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>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_E08
          Length = 119926

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                         
Query: 445   ctcaccctggctgacagtgcttccgctctcccttgaggaaaccttgcttctctttgcatc 504
             |||||||||  ||||||| |||||  || || || | ||||| |||||||||||||||||
Sbjct: 93323 ctcaccctgcttgacagtacttccagtcccctttaaagaaactttgcttctctttgcatc 93382

                           
Query: 505   acgaggcacatgac 518
             | ||||| ||||||
Sbjct: 93383 atgaggcccatgac 93396



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 323   cgcttttgcccgctctttggaggccgcccgacccctcgcttcttggc 369
             ||||| |||||  |||||||||||||||| || |||| |||||||||
Sbjct: 93210 cgcttctgcccattctttggaggccgcccaacgcctctcttcttggc 93256



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 266   cgtcgagtcctcttcctgcctttgctaggactgtcttgc 304
             ||||| |||||||||||||||||| |||| || ||||||
Sbjct: 93159 cgtcgggtcctcttcctgcctttgttagggctatcttgc 93197
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>dbj|AK101955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075K22, full
            insert sequence
          Length = 1855

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 445  ctcaccctggctgacagtgcttccgctctcccttgaggaaaccttgcttctctttgcatc 504
            |||||||||  ||||||| |||||  || || || | ||||| |||||||||||||||||
Sbjct: 1443 ctcaccctgcttgacagtacttccagtcccctttaaagaaactttgcttctctttgcatc 1384

                          
Query: 505  acgaggcacatgac 518
            | ||||| ||||||
Sbjct: 1383 atgaggcccatgac 1370



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 266  cgtcgagtcctcttcctgcctttgctaggactgtcttgc 304
            ||||| |||||||||||||||||| |||| || ||||||
Sbjct: 1607 cgtcgggtcctcttcctgcctttgttagggctatcttgc 1569



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 323  cgcttttgcccgctctttggaggccgcccgacccctcgcttcttggc 369
            ||||| |||||  |||||||||||||||| || |||| |||||||||
Sbjct: 1556 cgcttctgcccattctttggaggccgcccaacgcctctcttcttggc 1510
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>gb|AC008167.5| Homo sapiens BAC clone RP11-172O13 from 7, complete sequence
          Length = 142363

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 436   ggtctcgctctcaccctggctg 457
             ||||||||||||||||||||||
Sbjct: 75302 ggtctcgctctcaccctggctg 75323
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>gb|AC158148.5| Mus musculus chromosome 1, clone RP24-353B6, complete sequence
          Length = 158895

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   agtcctcttcctgcctttgc 290
             ||||||||||||||||||||
Sbjct: 15663 agtcctcttcctgcctttgc 15682
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>gb|BC072818.1| Xenopus laevis MGC80162 protein, mRNA (cDNA clone MGC:80162
            IMAGE:4970326), complete cds
          Length = 1774

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 376  cacgcttctctcaacggttttttcatca 403
            |||||||||||||||| ||| |||||||
Sbjct: 1264 cacgcttctctcaacgttttcttcatca 1291
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>ref|XM_367168.1| Magnaporthe grisea 70-15 hypothetical protein (MG07093.4) partial
            mRNA
          Length = 1743

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   gccaaagttgcgcttcatct 84
            ||||||||||||||||||||
Sbjct: 1095 gccaaagttgcgcttcatct 1076
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>gb|BC027601.1| Homo sapiens polycystic kidney disease (polycystin) and REJ (sperm
            receptor for egg jelly homolog, sea urchin)-like, mRNA
            (cDNA clone IMAGE:4839036)
          Length = 1655

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  caccactccttcctgttaca 134
            ||||||||||||||||||||
Sbjct: 1590 caccactccttcctgttaca 1571
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>emb|AL139108.17| Human DNA sequence from clone RP4-759O7 on chromosome 6 Contains part
             of the FUT9 gene for fucosyltransferase 9 (alpha (1,3)
             fucosyltransferase), complete sequence
          Length = 30544

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ggaaaccttgcttctctttg 500
             ||||||||||||||||||||
Sbjct: 13353 ggaaaccttgcttctctttg 13334
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>emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in linkage group 13,
             complete sequence
          Length = 80122

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   acacaacacgtctgcatatc 241
             ||||||||||||||||||||
Sbjct: 25048 acacaacacgtctgcatatc 25067
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>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete
             sequence
          Length = 208266

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tcacatctctacagccaaag 71
             ||||||||||||||||||||
Sbjct: 15218 tcacatctctacagccaaag 15199
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>gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164813

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   cctcttcctgcctttgctag 293
             ||||||||||||||||||||
Sbjct: 44327 cctcttcctgcctttgctag 44308
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>emb|AJ329258.1|HSA329258 Homo sapiens genomic sequence surrounding NotI site, clone
           NL4-AP22R
          Length = 693

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgagtcctcttcctgccttt 288
           ||||||||||||||||||||
Sbjct: 164 cgagtcctcttcctgccttt 183
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 304     cggcggcgcagtggcggcgcgctt 327
               ||||||||| ||||||||||||||
Sbjct: 3122126 cggcggcgcggtggcggcgcgctt 3122103
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>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence
          Length = 200174

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   gtcctcttcctgcctttgct 291
             ||||||||||||||||||||
Sbjct: 73657 gtcctcttcctgcctttgct 73676
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>emb|CT030654.8| Mouse DNA sequence from clone RP23-332G16 on chromosome 17, complete
              sequence
          Length = 194694

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tcacatctctacagccaaag 71
              ||||||||||||||||||||
Sbjct: 171368 tcacatctctacagccaaag 171349


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,106,610
Number of Sequences: 3902068
Number of extensions: 5106610
Number of successful extensions: 90760
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90664
Number of HSP's gapped (non-prelim): 96
length of query: 627
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 604
effective length of database: 17,143,297,704
effective search space: 10354551813216
effective search space used: 10354551813216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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